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1D43	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Quintana, J.R, Lipanov, A.A, Dickerson, R.E. Deposit date: 1991-06-04 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
1MW9	Crystal Structure of H365R mutant of 67 kDA N-terminal fragment of E. coli DNA Topoisomerase I Descriptor: DNA Topoisomerase I, SULFATE ION Authors: Perry, K, Mondragon, A. Deposit date: 2002-09-27 Release date: 2003-10-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Structure of a Complex between E. coli DNA Topoisomerase I and Single-Stranded DNA. Structure, 11, 2003
456D	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGMO6AATCCGCG): THE WATSON-CRICK TYPE N6-METHOXYADENOSINE/CYTIDINE BASE-PAIRS IN B-DNA Descriptor: DNA (5'-D(*CP*GP*CP*GP*(A47)P*AP*TP*CP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Chatake, T, Ono, A, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 1999-03-06 Release date: 2000-01-01 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystallographic studies on damaged DNAs. I. An N(6)-methoxyadenine residue forms a Watson-Crick pair with a cytosine residue in a B-DNA duplex. J.Mol.Biol., 294, 1999
5W20	Crystal Structure of inosine-substituted duplex DNA Descriptor: DNA (5'-D(*CP*CP*AP*IP*IP*CP*CP*TP*GP*G)-3'), MAGNESIUM ION Authors: Pallan, P.S, Egli, M. Deposit date: 2017-06-05 Release date: 2017-08-23 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.36 Å) Cite: Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography. J. Biomol. Struct. Dyn., 36, 2018
5W1Z	Crystal Structure of inosine-substituted decamer duplex DNA (I4) Descriptor: DNA (5'-D(*CP*CP*AP*IP*IP*CP*CP*(BRU)P*IP*I)-3'), MAGNESIUM ION, SODIUM ION Authors: Pallan, P.S, Egli, M. Deposit date: 2017-06-05 Release date: 2017-08-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography. J. Biomol. Struct. Dyn., 36, 2018
1DNS	BASE ONLY BINDING OF SPERMINE IN THE DEEP GROOVE OF THE A-DNA OCTAMER D(GTGTACAC) Descriptor: DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3'), SPERMINE Authors: Jain, S.C, Zon, G, Sundaralingam, M. Deposit date: 1989-02-22 Release date: 1990-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC). Biochemistry, 28, 1989
1D46	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-100 DEGREES C, PIPERAZINE DOWN Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Quintana, J.R, Lipanov, A.A, Dickerson, R.E. Deposit date: 1991-06-04 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
2JMW	Structure of DNA-Binding Domain of Arabidopsis GT-1 Descriptor: DNA binding protein GT-1 Authors: Nagata, T, Niyada, E, Noto, K, Ikeda, Y, Yamamoto, Y, Uesugi, S, Murata, J, Hiratsuka, K, Katahira, M. Deposit date: 2006-12-11 Release date: 2007-12-11 Last modified: 2023-12-20 Method: SOLUTION NMR Cite: Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation. Proteins, 78, 2010
5OP0	Structure of Prim-PolC from Mycobacterium smegmatis Descriptor: DNA polymerase LigD, polymerase domain Authors: Brissett, N.C, Doherty, A.J. Deposit date: 2017-08-09 Release date: 2017-11-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.84 Å) Cite: DNA Ligase C and Prim-PolC participate in base excision repair in mycobacteria. Nat Commun, 8, 2017
4ECT	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 140 sec Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.795 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
4ED0	Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 6.8 (Na+ MES) with 1 Ca2+ ion Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.653 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
1D44	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE DOWN Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Quintana, J.R, Lipanov, A.A, Dickerson, R.E. Deposit date: 1991-06-04 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
1D31	THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS Descriptor: DNA (5'-D(*CP*GP*CP*AP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Joshua-Tor, L, Frolow, F, Appella, E, Hope, H, Rabinovich, D, Sussman, J.L. Deposit date: 1991-04-25 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Three-dimensional structures of bulge-containing DNA fragments. J.Mol.Biol., 225, 1992
1D96	MOLECULAR STRUCTURE OF R(GCG)D(TATACGC): A DNA-RNA HYBRID HELIX JOINED TO DOUBLE HELICAL DNA Descriptor: DNA/RNA (5'-R(*GP*CP*GP*)-D(*TP*AP*TP*AP*CP*GP*C)-3') Authors: Wang, A.H.-J, Fujii, S, Van Boom, J.H, Van Der Marel, G.A, Van Boeckel, S.A.A, Rich, A. Deposit date: 1992-10-17 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Molecular structure of r(GCG)d(TATACGC): a DNA--RNA hybrid helix joined to double helical DNA. Nature, 299, 1982
1D45	DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN Descriptor: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Quintana, J.R, Lipanov, A.A, Dickerson, R.E. Deposit date: 1991-06-04 Release date: 1992-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry, 30, 1991
4CRX	ASYMMETRIC DNA-BENDING IN THE CRE-LOXP SITE-SPECIFIC RECOMBINATION SYNAPSE Descriptor: DNA (35 NUCLEOTIDE CRE RECOGNITION SITE), PROTEIN (CRE RECOMBINASE) Authors: Guo, F, Gopaul, D.N, Van Duyne, G.D. Deposit date: 1999-04-20 Release date: 1999-06-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Asymmetric DNA bending in the Cre-loxP site-specific recombination synapse. Proc.Natl.Acad.Sci.USA, 96, 1999
4ECW	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 250 sec Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.896 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
4ECS	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 80 sec Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.951 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
4ECX	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 7.0 for 300 sec Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.744 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
1OKB	crystal structure of Uracil-DNA glycosylase from Atlantic cod (Gadus morhua) Descriptor: CHLORIDE ION, GLYCEROL, URACIL-DNA GLYCOSYLASE Authors: Leiros, I, Moe, E, Lanes, O, Smalas, A.O, Willassen, N.P. Deposit date: 2003-07-21 Release date: 2004-04-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: The Crystal Structure of Uracil-DNA Glycosylase from Atlantic Cod (Gadus Morhua) Reveals Cold-Adaptation Features Acta Crystallogr.,Sect.D, 59, 2003
3MHT	TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH UNMODIFIED DNA AND ADOHCY Descriptor: DNA (5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE (E.C.2.1.1.73)), ... Authors: O'Gara, M, Klimasauskas, S, Roberts, R.J, Cheng, X. Deposit date: 1996-07-24 Release date: 1997-01-27 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Enzymatic C5-cytosine methylation of DNA: mechanistic implications of new crystal structures for HhaL methyltransferase-DNA-AdoHcy complexes. J.Mol.Biol., 261, 1996
4ECZ	Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 6.5 (Na+ MES) with 1 Ca2+ ion Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.834 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
1ESG	RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA. Descriptor: DNA (5'-D(*TP*GP*AP*AP*TP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*AP*TP*TP*CP*A)-3'), TYPE II RESTRICTION ENZYME BAMHI Authors: Viadiu, H, Aggarwal, A.K. Deposit date: 2000-04-09 Release date: 2000-05-31 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of BamHI bound to nonspecific DNA: a model for DNA sliding. Mol.Cell, 5, 2000
4ED2	Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.2 (Na+ HEPES) with 1 Ca2+ ion Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.711 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
4ED3	Human DNA polymerase eta - DNA ternary complex: AT crystal at pH 7.5 (Na+ HEPES) with 1 Ca2+ ion Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-26 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.791 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012

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