6TCI
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1LBU
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![BU of 1lbu by Molmil](/molmil-images/mine/1lbu) | HYDROLASE METALLO (ZN) DD-PEPTIDASE | Descriptor: | MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE, ZINC ION | Authors: | Charlier, P, Wery, J.-P, Dideberg, O, Frere, J.-M. | Deposit date: | 1996-03-16 | Release date: | 1996-11-08 | Last modified: | 2024-06-05 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Streptomyces Albus G D-Ala-A-Ala Carboxypeptidase Handbook of Metalloproteins, 3, 2004
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5ANZ
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8DA2
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![BU of 8da2 by Molmil](/molmil-images/mine/8da2) | Acinetobacter baumannii L,D-transpeptidase | Descriptor: | L,D-transpeptidase family protein | Authors: | Toth, M, Stewart, N.K, Smith, C.A, Vakulenko, S.B. | Deposit date: | 2022-06-12 | Release date: | 2022-09-14 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | The l,d-Transpeptidase Ldt Ab from Acinetobacter baumannii Is Poorly Inhibited by Carbapenems and Has a Unique Structural Architecture. Acs Infect Dis., 8, 2022
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7RUM
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![BU of 7rum by Molmil](/molmil-images/mine/7rum) | Endolysin from Escherichia coli O157:H7 phage FTEbC1, LysT84 | Descriptor: | Endolysin, GLYCEROL | Authors: | Love, M.J, Billington, C, Dobson, R.C.J. | Deposit date: | 2021-08-17 | Release date: | 2022-02-09 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.99 Å) | Cite: | The structure and function of modular Escherichia coli O157:H7 bacteriophage FTBEc1 endolysin, LysT84: defining a new endolysin catalytic subfamily. Biochem.J., 479, 2022
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5NM7
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![BU of 5nm7 by Molmil](/molmil-images/mine/5nm7) | Crystal structure of Burkholderia AP3 phage endolysin | Descriptor: | GLYCINE, Peptidoglycan-binding domain 1, TRIETHYLENE GLYCOL | Authors: | Zrubek, K, Wisniewska, M, Rembacz, K, Maciejewska, B, Drulis-Kawa, Z, Dubin, G. | Deposit date: | 2017-04-05 | Release date: | 2018-02-14 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | Modular endolysin of Burkholderia AP3 phage has the largest lysozyme-like catalytic subunit discovered to date and no catalytic aspartate residue. Sci Rep, 7, 2017
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6NTW
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![BU of 6ntw by Molmil](/molmil-images/mine/6ntw) | Crystal structure of E. coli YcbB | Descriptor: | (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, Probable L,D-transpeptidase YcbB, SULFATE ION | Authors: | Caveney, N.A, Strynadka, N.C.J, Caballero, G, Worrall, L.J. | Deposit date: | 2019-01-30 | Release date: | 2019-03-20 | Last modified: | 2020-01-08 | Method: | X-RAY DIFFRACTION (2.76 Å) | Cite: | Structural insight into YcbB-mediated beta-lactam resistance in Escherichia coli. Nat Commun, 10, 2019
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4NSO
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![BU of 4nso by Molmil](/molmil-images/mine/4nso) | Crystal structure of the effector-immunity protein complex | Descriptor: | Effector protein, Immunity protein | Authors: | Dong, C. | Deposit date: | 2013-11-28 | Release date: | 2014-04-16 | Last modified: | 2014-06-11 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural basis for recognition of the type VI spike protein VgrG3 by a cognate immunity protein. Febs Lett., 588, 2014
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4LPQ
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![BU of 4lpq by Molmil](/molmil-images/mine/4lpq) | Crystal structure of the L,D-transpeptidase (residues 123-326) from Xylanimonas cellulosilytica DSM 15894 | Descriptor: | CHLORIDE ION, ErfK/YbiS/YcfS/YnhG family protein | Authors: | Nocek, B, Bigelow, L, Endres, M, Babnigg, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | Deposit date: | 2013-07-16 | Release date: | 2013-11-13 | Method: | X-RAY DIFFRACTION (1.37 Å) | Cite: | Crystal structure of the L,D-transpeptidase (residues 123-326) from Xylanimonas cellulosilytica DSM 15894 To be Published
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7KGN
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![BU of 7kgn by Molmil](/molmil-images/mine/7kgn) | S. Typhi YcbB - ertapenem complex | Descriptor: | (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, L,D-transpeptidase | Authors: | Caveney, N.A, Strynadka, N.C.J. | Deposit date: | 2020-10-18 | Release date: | 2020-11-25 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (3.6 Å) | Cite: | Structural and Cellular Insights into the l,d-Transpeptidase YcbB as a Therapeutic Target in Citrobacter rodentium, Salmonella Typhimurium, and Salmonella Typhi Infections. Antimicrob.Agents Chemother., 65, 2021
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7KGM
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![BU of 7kgm by Molmil](/molmil-images/mine/7kgm) | C. rodentium YcbB - ertapenem complex | Descriptor: | (4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid, Putative exported protein | Authors: | Caveney, N.A, Strynadka, N.C.J. | Deposit date: | 2020-10-17 | Release date: | 2020-11-25 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural and Cellular Insights into the l,d-Transpeptidase YcbB as a Therapeutic Target in Citrobacter rodentium, Salmonella Typhimurium, and Salmonella Typhi Infections. Antimicrob.Agents Chemother., 65, 2021
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5TV7
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![BU of 5tv7 by Molmil](/molmil-images/mine/5tv7) | 2.05 Angstrom Resolution Crystal Structure of Peptidoglycan-Binding Protein from Clostridioides difficile in Complex with Glutamine Hydroxamate. | Descriptor: | GLUTAMINE HYDROXAMATE, Putative peptidoglycan-binding/hydrolysing protein | Authors: | Minasov, G, Wawrzak, Z, Shuvalova, L, Winsor, J, Dubrovska, I, Grimshaw, S, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID) | Deposit date: | 2016-11-08 | Release date: | 2016-12-14 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | 2.05 Angstrom Resolution Crystal Structure of Peptidoglycan-Binding Protein from Clostridioides difficile in Complex with Glutamine Hydroxamate. To Be Published
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4XXT
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![BU of 4xxt by Molmil](/molmil-images/mine/4xxt) | Crystal structure of Fused Zn-dependent amidase/peptidase/peptodoglycan-binding domain-containing protein from Clostridium acetobutylicum ATCC 824 | Descriptor: | 1,2-ETHANEDIOL, ACETATE ION, Fusion of predicted Zn-dependent amidase/peptidase (Cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family peptodoglycan-binding domain, ... | Authors: | Chang, C, Cuff, M, Joachimiak, G, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | Deposit date: | 2015-01-30 | Release date: | 2015-02-18 | Method: | X-RAY DIFFRACTION (1.77 Å) | Cite: | Crystal structure of Fused Zn-dependent amidase/peptidase/peptodoglycan-binding domain-containing protein from from Clostridium acetobutylicum ATCC 824 To Be Published
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5AO7
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![BU of 5ao7 by Molmil](/molmil-images/mine/5ao7) | Crystal Structure of SltB3 from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide | Descriptor: | 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... | Authors: | Dominguez-Gil, T, Hermoso, J.A. | Deposit date: | 2015-09-09 | Release date: | 2016-07-20 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Turnover of Bacterial Cell Wall by Sltb3, a Multidomain Lytic Transglycosylase of Pseudomonas Aeruginosa. Acs Chem.Biol., 11, 2016
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5AO8
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7AJZ
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![BU of 7ajz by Molmil](/molmil-images/mine/7ajz) | The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide) | Descriptor: | 1,2-ETHANEDIOL, L,D-transpeptidase YcbB, NAG-NAM(tetrapeptide), ... | Authors: | Batuecas, M.T, Hermoso, J.A. | Deposit date: | 2020-09-29 | Release date: | 2021-10-06 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.98 Å) | Cite: | The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide) To Be Published
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7AJO
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![BU of 7ajo by Molmil](/molmil-images/mine/7ajo) | The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with the cross-linking reaction intermediate | Descriptor: | (2~{S},6~{S})-2-azanyl-6-[[(4~{R})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]heptanedioic acid, 1,2-ETHANEDIOL, L,D-transpeptidase YcbB | Authors: | Batuecas, M.T, Hermoso, J.A. | Deposit date: | 2020-09-29 | Release date: | 2021-10-06 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with the cross-linking reaction intermediate To Be Published
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7AJX
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![BU of 7ajx by Molmil](/molmil-images/mine/7ajx) | The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with meropenem | Descriptor: | (2S,3R,4S)-4-{[(3S,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, 1,2-ETHANEDIOL, L,D-transpeptidase YcbB | Authors: | Batuecas, M.T, Hermoso, J.A. | Deposit date: | 2020-09-29 | Release date: | 2021-10-06 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.55 Å) | Cite: | The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with meropenem To Be Published
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7AJ9
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4FET
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![BU of 4fet by Molmil](/molmil-images/mine/4fet) | Catalytic domain of germination-specific lytic tansglycosylase SleB from Bacillus anthracis | Descriptor: | SODIUM ION, Spore cortex-lytic enzyme prepeptide | Authors: | Jing, X, Heffron, J, Popham, D.L, Schubot, F.D. | Deposit date: | 2012-05-30 | Release date: | 2012-07-25 | Last modified: | 2017-11-15 | Method: | X-RAY DIFFRACTION (1.909 Å) | Cite: | The catalytic domain of the germination-specific lytic transglycosylase SleB from Bacillus anthracis displays a unique active site topology. Proteins, 80, 2012
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4C2G
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![BU of 4c2g by Molmil](/molmil-images/mine/4c2g) | Crystal structure of CtpB(S309A) in complex with a peptide having a Val-Pro-Ala C-terminus | Descriptor: | CARBOXY-TERMINAL PROCESSING PROTEASE CTPB, PEPTIDE1 | Authors: | Mastny, M, Heuck, A, Kurzbauer, R, Clausen, T. | Deposit date: | 2013-08-17 | Release date: | 2013-12-04 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Ctpb Assembles a Gated Protease Tunnel Regulating Cell-Cell Signaling During Spore Formation in Bacillus Subtilis. Cell(Cambridge,Mass.), 155, 2013
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4C2F
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![BU of 4c2f by Molmil](/molmil-images/mine/4c2f) | Crystal structure of the CtpB R168A mutant present in an active conformation | Descriptor: | CARBOXY-TERMINAL PROCESSING PROTEASE CTPB, PEPTIDE1, PEPTIDE2 | Authors: | Mastny, M, Heuck, A, Kurzbauer, R, Clausen, T. | Deposit date: | 2013-08-17 | Release date: | 2013-12-04 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Ctpb Assembles a Gated Protease Tunnel Regulating Cell-Cell Signaling During Spore Formation in Bacillus Subtilis. Cell(Cambridge,Mass.), 155, 2013
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4C2E
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![BU of 4c2e by Molmil](/molmil-images/mine/4c2e) | Crystal structure of the protease CtpB(S309A) present in a resting state | Descriptor: | CARBOXY-TERMINAL PROCESSING PROTEASE CTPB | Authors: | Mastny, M, Heuck, A, Kurzbauer, R, Clausen, T. | Deposit date: | 2013-08-17 | Release date: | 2013-12-04 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Ctpb Assembles a Gated Protease Tunnel Regulating Cell-Cell Signaling During Spore Formation in Bacillus Subtilis. Cell(Cambridge,Mass.), 155, 2013
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4C2D
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![BU of 4c2d by Molmil](/molmil-images/mine/4c2d) | Crystal structure of the protease CtpB in an active state | Descriptor: | CARBOXY-TERMINAL PROCESSING PROTEASE CTPB, PEPTIDE1, PEPTIDE2 | Authors: | Mastny, M, Heuck, A, Kurzbauer, R, Clausen, T. | Deposit date: | 2013-08-17 | Release date: | 2013-12-04 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Ctpb Assembles a Gated Protease Tunnel Regulating Cell-Cell Signaling During Spore Formation in Bacillus Subtilis. Cell(Cambridge,Mass.), 155, 2013
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4C2H
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![BU of 4c2h by Molmil](/molmil-images/mine/4c2h) | Crystal structure of the CtpB(V118Y) mutant | Descriptor: | CARBOXY-TERMINAL PROCESSING PROTEASE CTPB | Authors: | Mastny, M, Heuck, A, Kurzbauer, R, Clausen, T. | Deposit date: | 2013-08-17 | Release date: | 2013-12-04 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Ctpb Assembles a Gated Protease Tunnel Regulating Cell-Cell Signaling During Spore Formation in Bacillus Subtilis. Cell(Cambridge,Mass.), 155, 2013
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