PDB: 401 件ウェブページステータス検索Chemie searchBIRD

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6SZD	Hydrogenase-2 variant R479K - hydrogen reduced form 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A. 登録日 2019-10-02 公開日 2020-10-14 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine. To Be Published
6SZK	Hydrogenase-2 variant R479K - hydrogen reduced form treated with CO 分子名称: CARBON MONOXIDE, CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, ... 著者 Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A. 登録日 2019-10-02 公開日 2020-10-14 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine. To Be Published
6SYX	Hydrogenase-2 variant R479K - reduced sample exposed to pure oxygen 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Carr, S.B, Beaton, S.E, Evans, R.M, Armstrong, F.A. 登録日 2019-10-01 公開日 2020-10-14 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine. To Be Published
6QGR	The F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri at the Nia-S state 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, ... 著者 Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H. 登録日 2019-01-12 公開日 2019-10-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.839 Å) 主引用文献 X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases. Angew.Chem.Int.Ed.Engl., 58, 2019
4UE3	The Mechanism of Hydrogen Activation by NiFe-hydrogenases and the Importance of the active site Arginine 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Evans, R.M, Wehlin, S.A.M, Nomerotskaia, E, Sargent, F, Carr, S.B, Phillips, S.E.V, Armstrong, F.A. 登録日 2014-12-15 公開日 2014-12-24 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Mechanism of Hydrogen Activation by [Nife] Hydrogenases. Nat.Chem.Biol., 12, 2016
6U8Y	Structure of the membrane-bound sulfane sulfur reductase (MBS), an archaeal respiratory membrane complex 分子名称: DUF4040 domain-containing protein, IRON/SULFUR CLUSTER, Monovalent cation/H+ antiporter subunit B, ... 著者 Yu, H.J, Li, H.L. 登録日 2019-09-06 公開日 2020-09-09 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structure of the respiratory MBS complex reveals iron-sulfur cluster catalyzed sulfane sulfur reduction in ancient life. Nat Commun, 11, 2020
2YBB	Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876) 分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, CARDIOLIPIN, ... 著者 Althoff, T, Mills, D.J, Popot, J.-L, Kuehlbrandt, W. 登録日 2011-03-02 公開日 2011-10-19 最終更新日 2019-10-23 実験手法 ELECTRON MICROSCOPY (19 Å) 主引用文献 Arrangement of Electron Transport Chain Components in Bovine Mitochondrial Supercomplex I(1)III(2)Iv(1). Embo J., 30, 2011
2WPN	Structure of the oxidised, as-isolated NiFeSe hydrogenase from D. vulgaris Hildenborough 分子名称: 3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE, BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II), CARBONMONOXIDE-(DICYANO) IRON, ... 著者 Marques, M.C, Coelho, R, De Lacey, A.L, Pereira, I.A.C, Matias, P.M. 登録日 2009-08-07 公開日 2010-01-12 最終更新日 2019-07-10 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state. J.Mol.Biol., 396, 2010
4WZ7	Crystal structure of mitochondrial NADH:ubiquinone oxidoreductase from Yarrowia lipolytica. 分子名称: 39-kDa subunit, FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Wirth, C, Zickermann, V, Brandt, U, Hunte, C. 登録日 2014-11-18 公開日 2015-03-25 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structural biology. Mechanistic insight from the crystal structure of mitochondrial complex I. Science, 347, 2015
3RGW	Crystal structure at 1.5 A resolution of an H2-reduced, O2-tolerant hydrogenase from Ralstonia eutropha unmasks a novel iron-sulfur cluster 分子名称: FE3-S4 CLUSTER, FE4-S3 CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Scheerer, P, Fritsch, J, Frielingsdorf, S, Kroschinsky, S, Friedrich, B, Lenz, O, Spahn, C.M.T. 登録日 2011-04-10 公開日 2011-10-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 The crystal structure of an oxygen-tolerant hydrogenase uncovers a novel iron-sulphur centre. Nature, 479, 2011
6CFW	cryoEM structure of a respiratory membrane-bound hydrogenase 分子名称: IRON/SULFUR CLUSTER, MBH subunit, Mbh13 NADH dehydrogenase subunit, ... 著者 Li, H.L, Yu, H.J. 登録日 2018-02-17 公開日 2018-05-23 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of an Ancient Respiratory System. Cell, 173, 2018
4KL8	High-resolution structure of anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air 分子名称: CALCIUM ION, CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, ... 著者 Volbeda, A, Cavazza, C, Fontecilla-Camps, J.C. 登録日 2013-05-07 公開日 2013-07-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Structural foundations for the O2 resistance of Desulfomicrobium baculatum [NiFeSe]-hydrogenase. Chem.Commun.(Camb.), 49, 2013
4KO1	High X-ray dose structure of H2-activated anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air 分子名称: CALCIUM ION, CARBONMONOXIDE-(DICYANO) IRON, GLYCEROL, ... 著者 Volbeda, A, Cavazza, C, Fontecilla-Camps, J.C. 登録日 2013-05-11 公開日 2013-07-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structural foundations for the O2 resistance of Desulfomicrobium baculatum [NiFeSe]-hydrogenase. Chem.Commun.(Camb.), 49, 2013
8ESW	Structure of mitochondrial complex I from Drosophila melanogaster, Flexible-class 1 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, ... 著者 Padavannil, A, Letts, J.A. 登録日 2022-10-15 公開日 2023-03-29 最終更新日 2023-04-05 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Resting mitochondrial complex I from Drosophila melanogaster adopts a helix-locked state. Elife, 12, 2023
8ESZ	Structure of mitochondrial complex I from Drosophila melanogaster, Helix-locked state 分子名称: (2R)-3-{[(S)-hydroxy(3-methylbutoxy)phosphoryl]oxy}-2-(octanoyloxy)propyl decanoate, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ... 著者 Padavannil, A, Letts, J.A. 登録日 2022-10-15 公開日 2023-03-29 最終更新日 2023-04-05 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Resting mitochondrial complex I from Drosophila melanogaster adopts a helix-locked state. Elife, 12, 2023
4OMF	The F420-reducing [NiFe]-hydrogenase complex from Methanothermobacter marburgensis, the first X-ray structure of a group 3 family member 分子名称: CHLORIDE ION, F420-reducing hydrogenase, subunit alpha, ... 著者 Vitt, S, Ma, K, Warkentin, E, Moll, J, Pierik, A, Shima, S, Ermler, U. 登録日 2014-01-27 公開日 2014-06-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 The F420-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member. J.Mol.Biol., 426, 2014
3MYR	Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state 分子名称: CHLORIDE ION, FE3-S4 CLUSTER, Hydrogenase (NiFe) small subunit HydA, ... 著者 Ogata, H, Kellers, P, Lubitz, W. 登録日 2010-05-11 公開日 2010-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state). J.Mol.Biol., 402, 2010
5AA5	Actinobacterial-type NiFe-hydrogenase from Ralstonia eutropha H16 at 2.85 Angstrom resolution 分子名称: IRON/SULFUR CLUSTER, MALONIC ACID, NIFE-HYDROGENASE LARGE SUBUNIT, ... 著者 Schaefer, C, Bommer, M, Hennig, S, Jeoung, J.H, Dobbek, H, Lenz, O. 登録日 2015-07-23 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.497 Å) 主引用文献 Structure of an Actinobacterial-Type [Nife]-Hydrogenase Reveals Insight Into O2-Tolerant H2 Oxidation. Structure, 24, 2016
4UQP	High-resolution structure of the D. fructosovorans NiFe-hydrogenase L122A mutant after exposure to air 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. 登録日 2014-06-24 公開日 2014-10-29 最終更新日 2023-03-15 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem., 20, 2015
4UQL	High-resolution structure of a Ni-A Ni-Sox mixture of the D. fructosovorans NiFe-hydrogenase L122A mutant 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. 登録日 2014-06-24 公開日 2014-10-29 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem., 20, 2015
5A4F	The mechanism of Hydrogen Activation by NiFe-hydrogenases. 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Evans, R.M, Brooke, E.J, Wehlin, S.A.M, Nomerotskaia, E, Sargent, F, Carr, S.B, Phillips, S.E.V, Armstrong, F.A. 登録日 2015-06-09 公開日 2015-11-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Mechanism of hydrogen activation by [NiFe] hydrogenases. Nat. Chem. Biol., 12, 2016
8GYM	Cryo-EM structure of Tetrahymena thermophila respiratory mega-complex MC IV2+(I+III2+II)2 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ... 著者 Wu, M.C, Hu, Y.Q, Han, F.Z, Zhou, L. 登録日 2022-09-23 公開日 2023-06-14 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 Structures of Tetrahymena thermophila respiratory megacomplexes on the tubular mitochondrial cristae. Nat Commun, 14, 2023
8GZU	Cryo-EM structure of Tetrahymena thermophila respiratory Megacomplex MC (IV2+I+III2+II)2 分子名称: 2 iron, 2 sulfur cluster-binding protein, 2-oxoglutarate/malate carrier protein, ... 著者 Wu, M.C, Hu, Y.Q, Han, F.Z, Zhou, L. 登録日 2022-09-27 公開日 2023-06-14 実験手法 ELECTRON MICROSCOPY (4.18 Å) 主引用文献 Structures of Tetrahymena thermophila respiratory megacomplexes on the tubular mitochondrial cristae. Nat Commun, 14, 2023
4C3O	Structure and function of an oxygen tolerant NiFe hydrogenase from Salmonella 分子名称: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ... 著者 Bowman, L, Flanagan, L, Fyfe, P.K, Parkin, A, Hunter, W.N, Sargent, F. 登録日 2013-08-26 公開日 2014-01-29 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 How the Structure of the Large Subunit Controls Function in an Oxygen-Tolerant [Nife]-Hydrogenase. Biochem.J., 458, 2014
1CC1	CRYSTAL STRUCTURE OF A REDUCED, ACTIVE FORM OF THE NI-FE-SE HYDROGENASE FROM DESULFOMICROBIUM BACULATUM 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, HYDROGENASE (LARGE SUBUNIT), ... 著者 Garcin, E, Vernede, X, Hatchikian, E.C, Volbeda, A, Frey, M, Fontecilla-Camps, J.C. 登録日 1999-03-03 公開日 1999-06-01 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center Structure Fold.Des., 7, 1999

 

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