PDB: 187 件ウェブページステータス検索Chemie searchBIRD

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7W05	12 mutant Ribonuclease from Hericium erinaceus GMP binding form 分子名称: DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1 著者 Takebe, K, Chida, T, Suzuki, M, Itagaki, T, Morita, Y, Uzawa, N, Kobayashi, H. 登録日 2021-11-17 公開日 2022-11-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 12 mutant Ribonuclease from Hericium erinaceus GMP binding form To Be Published
7MRX	Cryogenic crystal structure of barnase A43C/S80C bound to barstar C40A/C82A 分子名称: Barstar, Ribonuclease 著者 Caro, J.A, Smith, J, Wand, A.J. 登録日 2021-05-10 公開日 2022-05-18 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Conformational entropy and protein affinity To Be Published
6LS1	Ribonuclease from Hericium erinaceus active and GMP binding form 分子名称: DI(HYDROXYETHYL)ETHER, GUANOSINE, Ribonuclease T1, ... 著者 Takebe, K, Suzuki, M, Sangawa, T, Kobayashi, H, Itagaki, T. 登録日 2020-01-16 公開日 2021-01-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Ribonuclease from Hericium erinaceus active and GMP binding form To Be Published
6PQK	Cryogenic crystal structure of barnase A43C/S80C bound to barstar C40A/S59C/A67C/C82A 分子名称: 1,2-ETHANEDIOL, Barstar, PHOSPHATE ION, ... 著者 Caro, J.A, Djanto, V, Wand, A.J. 登録日 2019-07-09 公開日 2020-07-15 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Targeting conformational entropy to modulate binding affinity To Be Published
5GY6	Ribonuclease from Hericium erinaceus (RNase He1) 分子名称: Ribonuclease T1, ZINC ION 著者 Kobayashi, H, Sangawa, T, Takebe, K, Itagaki, T, Motoyoshi, N, Suzuki, M. 登録日 2016-09-21 公開日 2017-09-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Ribonuclease from Hericium erinaceus (RNase He1) To Be Published
3WR2	RNase Po1 complexed with 3'GMP 分子名称: GUANOSINE-3'-MONOPHOSPHATE, Guanyl-specific ribonuclease Po1 著者 Hara, Y, Katsutani, T, Kobayashi, H, Suzuki, M. 登録日 2014-02-13 公開日 2015-02-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 RNase Po1 complexed with 3'GMP to be published
3WHO	X-ray-Crystallographic Structure of an RNase Po1 Exhibiting Anti-tumor Activity 分子名称: Guanyl-specific ribonuclease Po1 著者 Kobayashi, H, Katsurtani, T, Hara, Y, Motoyoshi, N, Itagaki, T, Akita, F, Higashiura, A, Yamada, Y, Suzuki, M, Inokuchi, N. 登録日 2013-08-30 公開日 2014-07-02 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 X-ray crystallographic structure of RNase Po1 that exhibits anti-tumor activity. Biol.Pharm.Bull., 37, 2014
4J5K	Crystal structure analysis of Streptomyces aureofaciens ribonuclease Sa Y51F mutant 分子名称: GLYCEROL, Guanyl-specific ribonuclease Sa, SULFATE ION 著者 Urbanikova, L, Sevcik, J. 登録日 2013-02-08 公開日 2014-05-28 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.23 Å) 主引用文献 Contribution of hydrogen bonds to protein stability. Protein Sci., 23, 2014
4J5G	Crystal structure analysis of Streptomyces aureofaciens ribonuclease Sa T95A mutant 分子名称: CACODYLATE ION, GLYCEROL, Guanyl-specific ribonuclease Sa, ... 著者 Urbanikova, L, Sevcik, J. 登録日 2013-02-08 公開日 2014-05-28 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.31 Å) 主引用文献 Contribution of hydrogen bonds to protein stability. Protein Sci., 23, 2014
4GHO	Crystal Structure Analysis of Streptomyces aureofaciens Ribonuclease S24A mutant 分子名称: Guanyl-specific ribonuclease Sa, SULFATE ION 著者 Sevcik, J, Urbanikova, L. 登録日 2012-08-08 公開日 2013-08-14 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Contribution of hydrogen bonds to protein stability Protein Sci., 23, 2014
4HAA	Structure of Ribonuclease Binase Glu43Ala/Phe81Ala Mutant 分子名称: Ribonuclease 著者 Polyakov, K.M, Trofimov, A.A, Mitchevich, V.A, Dorovatovskii, P.V, Schulga, A.A, Makarov, A.A, Tkach, E.N, Goncharuk, D.A. 登録日 2012-09-26 公開日 2012-10-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and functional studies of the ribonuclease binase Glu43Ala/Phe81Ala mutant. Acta Crystallogr.,Sect.D, 69, 2013
3URP	Re-refinement of PDB entry 5RNT - ribonuclease T1 with guanosine-3',5'-diphosphate and phosphate ion bound 分子名称: GUANOSINE-3',5'-DIPHOSPHATE, Guanyl-specific ribonuclease T1, PHOSPHATE ION, ... 著者 Smart, O.S, Womack, T.O, Flensburg, C, Keller, P, Sharff, A, Paciorek, W, Vonrhein, C, Bricogne, G. 登録日 2011-11-22 公開日 2012-03-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.19 Å) 主引用文献 Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER. Acta Crystallogr.,Sect.D, 68, 2012
3SYU	Re-refined coordinates for pdb entry 1det - ribonuclease T1 carboxymethylated at GLU 58 in complex with 2'GMP 分子名称: GUANOSINE-2'-MONOPHOSPHATE, Guanyl-specific ribonuclease T1, SODIUM ION, ... 著者 Smart, O.S, Womack, T.O, Bricogne, G. 登録日 2011-07-18 公開日 2012-03-28 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER. Acta Crystallogr.,Sect.D, 68, 2012
3Q3F	Engineering Domain-Swapped Binding Interfaces by Mutually Exclusive Folding: Insertion of Ubiquitin into position 103 of Barnase 分子名称: Ribonuclease/Ubiquitin chimeric protein, SULFATE ION 著者 Ha, J.-H, Karchin, J.M, Walker-Kopp, N, Huang, L.-S, Berry, E.A, Loh, S.N. 登録日 2010-12-21 公開日 2012-01-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.169 Å) 主引用文献 Engineering domain-swapped binding interfaces by mutually exclusive folding. J.Mol.Biol., 416, 2012
3A5E	Crystal structure of 5K RNase Sa 分子名称: Guanyl-specific ribonuclease Sa 著者 Takano, K. 登録日 2009-08-06 公開日 2010-08-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Urea denatured state ensembles contain extensive secondary structure that is increased in hydrophobic proteins Protein Sci., 19, 2010
3AGO	Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate 分子名称: CALCIUM ION, CHLORIDE ION, Ribonuclease U2, ... 著者 Noguchi, S. 登録日 2010-04-03 公開日 2010-07-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (0.99 Å) 主引用文献 Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate Acta Crystallogr.,Sect.D, 66, 2010
3AHS	Crystal Structure of Ustilago sphaerogena Ribonuclease U2B 分子名称: GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ... 著者 Noguchi, S. 登録日 2010-04-29 公開日 2010-07-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Structural changes induced by the deamidation and isomerization of asparagine revealed by the crystal structure of Ustilago sphaerogena ribonuclease U2B Biopolymers, 93, 2010
3AHW	Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 2'-monophosphate 分子名称: ADENOSINE-2'-MONOPHOSPHATE, CALCIUM ION, Ribonuclease U2 著者 Noguchi, S. 登録日 2010-05-04 公開日 2010-07-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.03 Å) 主引用文献 Conformational variation revealed by the crystal structure of RNase U2A complexed with Ca ion and 2'-adenylic acid at 1.03 angstrom resolution. Protein Pept.Lett., 17, 2010
3AGN	Crystal Structure of Ustilago sphaerogena Ribonuclease U2 Complexed with adenosine 3'-monophosphate 分子名称: CALCIUM ION, Ribonuclease U2, [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate 著者 Noguchi, S. 登録日 2010-04-03 公開日 2010-07-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (0.96 Å) 主引用文献 Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate Acta Crystallogr.,Sect.D, 66, 2010
3KCH	Baranase crosslinked by glutaraldehyde 分子名称: PENTANEDIAL, Ribonuclease 著者 Prange, T, Salem, M, Mauguen, Y. 登録日 2009-10-21 公開日 2010-03-09 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Revisiting glutaraldehyde cross-linking: the case of the Arg-Lys intermolecular doublet Acta Crystallogr.,Sect.F, 66, 2010
2KF6	Barnase bound to d(CGAC) high pressure 分子名称: Ribonuclease 著者 Williamson, M.P, Wilton, D.J. 登録日 2009-02-11 公開日 2009-12-08 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations. Biophys.J., 97, 2009
2KF4	Barnase high pressure structure 分子名称: Ribonuclease 著者 Williamson, M.P, Wilton, D.J. 登録日 2009-02-11 公開日 2009-12-08 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations. Biophys.J., 97, 2009
2KF3	Barnase, low pressure reference NMR structure 分子名称: Ribonuclease 著者 Williamson, M.P, Wilton, D.J. 登録日 2009-02-11 公開日 2009-12-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations. Biophys.J., 97, 2009
2KF5	Barnase bound to d(CGAC), low pressure 分子名称: Ribonuclease 著者 Williamson, M.P, Wilton, D.J. 登録日 2009-02-11 公開日 2009-12-08 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Pressure-dependent structure changes in barnase on ligand binding reveal intermediate rate fluctuations. Biophys.J., 97, 2009
2KAA	Solution Structure of Hirsutellin A from Hirsutella thompsonii 分子名称: Hirsutellin A 著者 Viegas, A, Macedo, A.L, Bruix, M. 登録日 2008-11-04 公開日 2009-11-03 最終更新日 2019-10-09 実験手法 SOLUTION NMR 主引用文献 Solution structure of hirsutellin A--new insights into the active site and interacting interfaces of ribotoxins. Febs J., 276, 2009

 

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