PDB: 13252 件ウェブページステータス検索Chemie searchBIRD

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1XST	Solution structure of E.coli RNase P RNA P4 stem, U69A mutation, complexed with cobalt (III) hexammine. 分子名称: COBALT HEXAMMINE(III), RNA (27-MER) 著者 Schmitz, M. 登録日 2004-10-20 公開日 2004-12-28 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004
3AMU	Crystal structure of the TiaS-tRNA(Ile2)-AMPCPP-agmatine complex 分子名称: AGMATINE, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, Putative uncharacterized protein, ... 著者 Numata, T, Osawa, T. 登録日 2010-08-23 公開日 2011-10-19 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis of tRNA agmatinylation essential for AUA codon decoding Nat.Struct.Mol.Biol., 18, 2011
3AMT	Crystal structure of the TiaS-tRNA(Ile2)-ATP complex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Putative uncharacterized protein, RNA (78-MER) 著者 Numata, T, Osawa, T. 登録日 2010-08-23 公開日 2011-10-12 最終更新日 2013-06-19 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural basis of tRNA agmatinylation essential for AUA codon decoding Nat.Struct.Mol.Biol., 18, 2011
6H5Q	Cryo-EM structure of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to polyA RNA hexamers. 分子名称: Nucleocapsid, RNA (5'-R(*AP*AP*AP*AP*AP*A)-3') 著者 Desfosses, A, Milles, S, Ringkjobing Jensen, M, Guseva, S, Colletier, J, Maurin, D, Schoehn, G, Gutsche, I, Ruigrok, R, Blackledge, M. 登録日 2018-07-25 公開日 2019-03-13 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication. Proc.Natl.Acad.Sci.USA, 116, 2019
6H5S	Cryo-EM map of in vitro assembled Measles virus N into nucleocapsid-like particles (NCLPs) bound to viral genomic 5-prime RNA hexamers. 分子名称: Nucleocapsid, RNA (5'-R(*AP*CP*CP*AP*GP*A)-3') 著者 Desfosses, A, Milles, S, Ringkjobing Jensen, M, Guseva, S, Colletier, J.P, Maurin, D, Schoehn, G, Gutsche, I, Ruigrok, R, Blackledge, M. 登録日 2018-07-25 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Assembly and cryo-EM structures of RNA-specific measles virus nucleocapsids provide mechanistic insight into paramyxoviral replication. Proc.Natl.Acad.Sci.USA, 116, 2019
1BPE	CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA; EVIDENCE FOR A COMMON POLYMERASE MECHANISM 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA POLYMERASE BETA 著者 Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-04-12 公開日 1994-07-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science, 264, 1994
1G71	CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS DNA PRIMASE 分子名称: CHLORIDE ION, DNA PRIMASE, SULFATE ION, ... 著者 Augustin, M.A, Huber, R, Kaiser, J.T. 登録日 2000-11-08 公開日 2001-01-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of a DNA-dependent RNA polymerase (DNA primase). Nat.Struct.Biol., 8, 2001
1NC0	U80G U6 Intramolecular Stem-Loop RNA from Saccharomyces cerevisiae 分子名称: U80G U6 RNA Intramolecular Stem-Loop 著者 Sashital, D.G, Allmann, A.M, Van Doren, S, Butcher, S.E. 登録日 2002-12-04 公開日 2003-02-25 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural Basis for a Lethal Mutation in U6 RNA Biochemistry, 42, 2003
1BPD	CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM 分子名称: DNA POLYMERASE BETA, PHOSPHATE ION 著者 Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-04-12 公開日 1994-06-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science, 264, 1994
1BPB	CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM 分子名称: DNA POLYMERASE BETA 著者 Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-04-12 公開日 1994-06-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science, 264, 1994
4I9Q	Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ... 著者 Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M. 登録日 2012-12-05 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site. Plos One, 8, 2013
3AX1	Molecular insights into miRNA processing by Arabidopsis Serrate 分子名称: Serrate RNA effector molecule, ZINC ION 著者 Yuan, Y.A, Machida, S, Chen, H.Y. 登録日 2011-03-28 公開日 2011-07-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.74 Å) 主引用文献 Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE Nucleic Acids Res., 39, 2011
4NBO	Human steroid receptor RNA activator protein carboxy-terminal domain 分子名称: Steroid receptor RNA activator 1 著者 Mckay, D.B, Xi, L, Barthel, K.K.B, Cech, T.C. 登録日 2013-10-23 公開日 2014-02-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.807 Å) 主引用文献 Structure and function of steroid receptor RNA activator protein, the proposed partner of SRA noncoding RNA. J.Mol.Biol., 426, 2014
2LBR	Conformation Effects of Base Modification on the Anticodon Stem-loop of Bacillus subtilis tRNATYR 分子名称: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*(PSU)P*CP*CP*CP*C)-3') 著者 Denmon, A.P, Wang, J, Nikonowicz, E.P. 登録日 2011-04-05 公開日 2011-08-03 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr). J.Mol.Biol., 412, 2011
6HVO	Crystal structure of human PCNA in complex with three peptides of p12 subunit of human polymerase delta 分子名称: DNA polymerase delta subunit 4, Proliferating cell nuclear antigen, SULFATE ION 著者 Gonzalez-Magana, A, Romano-Moreno, M, Rojas, A.L, Blanco, F.J, De Biasio, A. 登録日 2018-10-11 公開日 2019-01-23 最終更新日 2019-03-27 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The p12 subunit of human polymerase delta uses an atypical PIP box for molecular recognition of proliferating cell nuclear antigen (PCNA). J.Biol.Chem., 294, 2019
1XSU	Solution structure of E.coli RNase P RNA P4 stem, U69C/C70U mutation, complexed with cobalt (III) hexammine. 分子名称: COBALT HEXAMMINE(III), RNA (27-MER) 著者 Schmitz, M. 登録日 2004-10-20 公開日 2004-12-28 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Change of RNase P RNA function by single base mutation correlates with perturbation of metal ion binding in P4 as determined by NMR spectroscopy Nucleic Acids Res., 32, 2004
2CLX	4-Arylazo-3,5-diamino-1H-pyrazole CDK Inhibitors: SAR Study, Crystal Structure in Complex with CDK2, Selectivity, and Cellular Effects 分子名称: 4-[(E)-(3,5-DIAMINO-1H-PYRAZOL-4-YL)DIAZENYL]PHENOL, CELL DIVISION PROTEIN KINASE 2 著者 Krystof, V, Cankar, P, Frysova, I, Slouka, J, Kontopidis, G, Dzubak, P, Hajduch, M, Deazevedo, W.F, Paprskarova, M, Orsag, M, Rolcik, J, Latr, A, Fischer, P.M, Strnad, M. 登録日 2006-05-02 公開日 2006-11-01 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 4-Arylazo-3,5-Diamino-1H-Pyrazole Cdk Inhibitors: Sar Study, Crystal Structure in Complex with Cdk2, Selectivity, and Cellular Effects J.Med.Chem., 49, 2006
4QM6	Structure of bacterial polynucleotide kinase bound to GTP and RNA 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase, ... 著者 Das, U, Wang, L.K, Smith, P, Shuman, S. 登録日 2014-06-15 公開日 2014-10-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structures of bacterial polynucleotide kinase in a michaelis complex with nucleoside triphosphate (NTP)-Mg2+ and 5'-OH RNA and a mixed substrate-product complex with NTP-Mg2+ and a 5'-phosphorylated oligonucleotide. J.Bacteriol., 196, 2014
2ATL	Unmodified Insertion Ternary Complex 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*T*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3', ... 著者 Rechkoblit, O, Malinina, L, Cheng, Y, Kuryavyi, V, Broyde, S, Geacintov, N.E, Patel, D.J. 登録日 2005-08-25 公開日 2006-01-10 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion Plos Biol., 4, 2006
6Y83	Capsid structure of Leishmania RNA virus 1 分子名称: Capsid protein 著者 Prochazkova, M, Fuzik, T, Grybtchuk, D, Falginella, F, Podesvova, L, Yurchenko, V, Vacha, R, Plevka, P. 登録日 2020-03-03 公開日 2020-11-11 最終更新日 2022-03-30 実験手法 ELECTRON MICROSCOPY (3.65 Å) 主引用文献 Capsid Structure of Leishmania RNA Virus 1. J.Virol., 95, 2021
3L0U	The crystal structure of unmodified tRNAPhe from Escherichia coli 分子名称: MAGNESIUM ION, POTASSIUM ION, Unmodified tRNAPhe 著者 Byrne, R.T, Konevega, A.L, Rodnina, M.V, Antson, A.A. 登録日 2009-12-10 公開日 2010-03-16 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The crystal structure of unmodified tRNAPhe from Escherichia coli Nucleic Acids Res., 38, 2010
2ASD	oxoG-modified Insertion Ternary Complex 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*CP*T*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3', ... 著者 Rechkoblit, O, Malinina, L, Cheng, Y, Kuryavyi, V, Broyde, S, Geacintov, N.E, Patel, D.J. 登録日 2005-08-23 公開日 2006-01-10 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion Plos Biol., 4, 2006
4KHN	Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, CALCIUM ION, DNA (5'-D(*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*C)-3'), ... 著者 Guja, K.E, Jacewicz, A, Trzemecka, A, Plochocka, D, Yakubovskaya, E, Bebenek, A, Garcia-Diaz, M. 登録日 2013-04-30 公開日 2013-10-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site. Plos One, 8, 2013
1KKA	Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) 分子名称: anticodon stem-loop of tRNA(PHE) 著者 Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P. 登録日 2001-12-06 公開日 2002-07-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe). J.Mol.Biol., 319, 2002
1JID	Human SRP19 in complex with helix 6 of Human SRP RNA 分子名称: HELIX 6 OF HUMAN SRP RNA, MAGNESIUM ION, SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN 著者 Wild, K, Sinning, I, Cusack, S. 登録日 2001-07-02 公開日 2001-10-19 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of an early protein-RNA assembly complex of the signal recognition particle. Science, 294, 2001

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