PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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3AV5	Crystal structure of mouse DNA methyltransferase 1 with AdoHcy 分子名称: DNA (cytosine-5)-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION 著者 Takeshita, K, Suetake, I, Yamashita, E, Suga, M, Narita, H, Nakagawa, A, Tajima, S. 登録日 2011-02-22 公開日 2011-05-04 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1). Proc.Natl.Acad.Sci.USA, 108, 2011
2A3V	Structural basis for broad DNA-specificity in integron recombination 分子名称: DNA (31-MER), DNA (34-MER), site-specific recombinase IntI4 著者 MacDonald, D, Demarre, G, Bouvier, M, Mazel, D, Gopaul, D.N. 登録日 2005-06-27 公開日 2006-05-02 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for broad DNA-specificity in integron recombination. Nature, 440, 2006
2JPA	Structure of the Wilms Tumor Suppressor Protein Zinc Finger Domain Bound to DNA 分子名称: DNA (5'-D(P*DCP*DAP*DGP*DAP*DCP*DGP*DCP*DCP*DCP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(P*DCP*DGP*DCP*DGP*DGP*DGP*DGP*DGP*DCP*DGP*DTP*DCP*DTP*DG)-3'), Wilms tumor 1, ... 著者 Stoll, R, Lee, B.M, Debler, E.W, Laity, J.H, Wilson, I.A, Dyson, H.J, Wright, P.E. 登録日 2007-05-01 公開日 2007-10-30 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure of the wilms tumor suppressor protein zinc finger domain bound to DNA J.Mol.Biol., 372, 2007
2LEX	Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA 分子名称: DNA (5'-D(*CP*G*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*C*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*CP*G)-3'), Probable WRKY transcription factor 4, ... 著者 Yamasaki, K, Kigawa, T, Watanabe, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2011-06-24 公開日 2012-01-18 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural basis for sequence-spscific DNA recognition by an Arabidopsis WRKY transcription factor J.Biol.Chem., 2012
6RYI	WUS-HD bound to G-Box DNA 分子名称: DNA (5'-D(P*CP*CP*CP*AP*TP*CP*AP*CP*GP*TP*GP*AP*CP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*GP*TP*CP*AP*CP*GP*TP*GP*AP*TP*GP*GP*G)-3'), Protein WUSCHEL 著者 Sloan, J.J, Wild, K, Sinning, I. 登録日 2019-06-10 公開日 2020-04-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.691 Å) 主引用文献 Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, 11, 2020
6S85	Cutting state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and dsDNA. 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (31-MER), DNA (32-MER), ... 著者 Kaeshammer, L, Saathoff, J.H, Gut, F, Bartho, J, Alt, A, Kessler, B, Lammens, K, Hopfner, K.P. 登録日 2019-07-08 公開日 2019-09-04 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Mechanism of DNA End Sensing and Processing by the Mre11-Rad50 Complex. Mol.Cell, 76, 2019
148D	THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE THROMBIN BINDING DNA APTAMER D(GGTTGGTGTGGTTGG) 分子名称: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3') 著者 Schultze, P, Macaya, R.F, Feigon, J. 登録日 1993-11-15 公開日 1994-04-30 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG). J.Mol.Biol., 235, 1994
177D	SOLUTION STRUCTURE AND HYDRATION PATTERNS OF A PYRIMIDINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING A NOVEL T(DOT)CG TRIPLE 分子名称: DNA (5'-D(*GP*AP*AP*CP*AP*GP*GP*TP*TP*TP*TP*T*CP*CP*TP*GP*TP*TP*CP*TP*TP*TP*TP*T*CP*TP*TP*TP*TP*CP*C)-3') 著者 Radhakrishnan, I, Patel, D.J. 登録日 1994-05-24 公開日 1994-10-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base-triple. J.Mol.Biol., 241, 1994
2XNK	Structure and function of the Rad9-binding region of the DNA damage checkpoint adaptor TopBP1 分子名称: DNA TOPOISOMERASE 2-BINDING PROTEIN 1, GLYCEROL 著者 Rappas, M, Oliver, A.W, Pearl, L.H. 登録日 2010-08-03 公開日 2010-09-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure and Function of the Rad9-Binding Region of the DNA-Damage Checkpoint Adaptor Topbp1. Nucleic Acids Res., 39, 2011
1AXU	SOLUTION NMR STRUCTURE OF THE [AP]DG ADDUCT OPPOSITE DA IN A DNA DUPLEX, NMR, 9 STRUCTURES 分子名称: DNA DUPLEX D(CCATC-[AP]G-CTACC)D(GGTAGAGATGG), N-1-AMINOPYRENE 著者 Gu, Z, Gorin, A.A, Krishnasami, R, Hingerty, B.E, Basu, A.K, Broyde, S, Patel, D.J. 登録日 1997-10-21 公開日 1998-07-01 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex. Biochemistry, 38, 1999
4K74	The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. 分子名称: DNA polymerase III subunit beta, UmuC peptide 著者 Patoli, A.A, Winter, J.A, Bunting, K.A. 登録日 2013-04-16 公開日 2013-07-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the beta-clamp processivity factor. Bmc Struct.Biol., 13, 2013
3UQZ	X-ray structure of DNA processing protein A (DprA) from Streptococcus pneumoniae 分子名称: DNA processing protein DprA, SULFATE ION 著者 Quevillon-Cheruel, S, Brooks, M.A, Li de la Sierra-Gallay, I. 登録日 2011-11-21 公開日 2012-08-29 最終更新日 2012-09-26 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation. Proc.Natl.Acad.Sci.USA, 109, 2012
6GZ7	Polyamide - DNA complex NMR structure 分子名称: DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), dimethyl-[3-[3-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[4-[[1-methyl-4-[[1-methyl-4-[[1-methyl-4-[(1-propan-2-ylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]butanoylamino]imidazol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]pyrrol-2-yl]carbonylamino]propanoylamino]propyl]azanium 著者 Aman, K. 登録日 2018-07-03 公開日 2018-11-28 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural and Kinetic Profiling of Allosteric Modulation of Duplex DNA Induced by DNA-Binding Polyamide Analogues. Chemistry, 25, 2019
7OHE	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*CP*GP*CP*GP*TP*CP*GP*AP*CP*GP*CP*G)-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-10 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
7OHM	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*CP*GP*AP*(DH)P*GP*TP*CP*G)-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-11 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
7OHJ	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*CP*GP*AP*CP*GP*TP*CP*G)-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-11 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
7OGV	A self-complementary DNA dodecamer duplex contaning 5-hydroxymethylcitosine 分子名称: DNA (5'-D(*(P*GP*CP*GP*TP*(DH)P*GP*AP*CP*GP*CP*G-3') 著者 Battistini, F, Dans, P.D, Terrazas, M, Castellazzi, C.L, Portella, G, Labrador, M, Villegas, N, Brun-Heath, I, Gonzalez, C, Orozco, M. 登録日 2021-05-07 公開日 2021-11-03 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The Impact of the HydroxyMethylCytosine epigenetic signature on DNA structure and function. Plos Comput.Biol., 17, 2021
1D21	BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON 分子名称: DNA (5'-D(*(5CM)P*GP*TP*(AS)P*(5CM)P*G)-3'), NOGALAMYCIN 著者 Gao, Y.-G, Liaw, Y.-C, Robinson, H, Wang, A.H.-J. 登録日 1990-08-08 公開日 1991-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Binding of the antitumor drug nogalamycin and its derivatives to DNA: structural comparison. Biochemistry, 29, 1990
8AV6	CryoEM structure of INO80 core nucleosome complex in closed grappler conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DASH complex subunit DAD4, ... 著者 Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. 登録日 2022-08-26 公開日 2022-12-14 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (4.68 Å) 主引用文献 Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
6RYD	WUS-HD bound to TGAA DNA 分子名称: DNA (5'-D(*AP*GP*TP*GP*TP*AP*TP*GP*AP*AP*TP*GP*AP*AP*CP*G)-3'), DNA (5'-D(*CP*GP*TP*TP*CP*AP*TP*TP*CP*AP*TP*AP*CP*AP*CP*T)-3'), MAGNESIUM ION, ... 著者 Sloan, J.J, Wild, K, Sinning, I. 登録日 2019-06-10 公開日 2020-04-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.575 Å) 主引用文献 Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, 11, 2020
6RYL	WUS-HD bound to TAAT DNA 分子名称: DNA (5'-D(P*CP*AP*CP*AP*AP*CP*CP*CP*AP*TP*TP*AP*AP*CP*AP*C)-3'), DNA (5'-D(P*GP*TP*GP*TP*TP*AP*AP*TP*GP*GP*GP*TP*TP*GP*TP*G)-3'), Protein WUSCHEL 著者 Sloan, J.J, Wild, K, Sinning, I. 登録日 2019-06-10 公開日 2020-04-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.63 Å) 主引用文献 Structural basis for the complex DNA binding behavior of the plant stem cell regulator WUSCHEL. Nat Commun, 11, 2020
8OR8	Solution structure of the 8-17 DNAzyme in presence of Zn2+ 分子名称: 8-17 DNAzyme 著者 Andralojc, W, Gdaniec, Z. 登録日 2023-04-13 公開日 2023-04-26 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 The 8-17 DNAzyme can operate in a single active structure regardless of metal ion cofactor. Nat Commun, 15, 2024
1D22	BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON 分子名称: DNA (5'-D(*(5CM)P*GP*TP*(AS)P*(5CM)P*G)-3'), U-58872, HYDROXY DERIVATIVE OF NOGALAMYCIN 著者 Gao, Y.-G, Liaw, Y.-C, Robinson, H, Wang, A.H.-J. 登録日 1990-08-08 公開日 1991-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Binding of the antitumor drug nogalamycin and its derivatives to DNA: structural comparison. Biochemistry, 29, 1990
2XNH	Structure and function of the Rad9-binding region of the DNA damage checkpoint adaptor TopBP1 分子名称: DNA TOPOISOMERASE 2-BINDING PROTEIN 1, IODIDE ION 著者 Rappas, M, Oliver, A.W, Pearl, L.H. 登録日 2010-08-02 公開日 2010-09-01 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure and Function of the Rad9-Binding Region of the DNA-Damage Checkpoint Adaptor Topbp1. Nucleic Acids Res., 39, 2011
383D	Hydration and recognition of methylated CPG steps in DNA 分子名称: DNA (5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)-3'), MAGNESIUM ION 著者 Mayer-Jung, C, Moras, D, Timsit, Y. 登録日 1998-03-02 公開日 1998-04-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Hydration and Recognition of Methylated Cpg Steps in DNA Embo J., 17, 1998

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