PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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3G6U	GR DNA-binding domain:FKBP5 16bp complex-49 分子名称: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A, Yamamoto, K.R, Meijsing, S.H. 登録日 2009-02-08 公開日 2009-04-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 DNA binding site sequence directs glucocorticoid receptor structure and activity. Science, 324, 2009
8H2F	Crystal structure of DnaQ domain in complex witn TMP of Streptococcus thermophilus strain DGCC 7710 分子名称: DnaQ, MAGNESIUM ION, THYMIDINE-5'-PHOSPHATE 著者 Chen, Q, Yu, Y. 登録日 2022-10-05 公開日 2023-09-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.448 Å) 主引用文献 DnaQ mediates directional spacer acquisition in the CRISPR-Cas system by a time-dependent mechanism. Innovation (N Y), 4, 2023
8H18	Crystal structure of DnaQ domain of Streptococcus thermophilus strain DGCC 7710 分子名称: DnaQ, GLYCEROL, MAGNESIUM ION 著者 Chen, Q, Yu, Y. 登録日 2022-10-01 公開日 2023-09-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.499 Å) 主引用文献 DnaQ mediates directional spacer acquisition in the CRISPR-Cas system by a time-dependent mechanism. Innovation (N Y), 4, 2023
3G9O	GR DNA-binding domain:Sgk 16bp complex-9 分子名称: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A, Yamamoto, K.R, Meijsing, S.H. 登録日 2009-02-13 公開日 2009-04-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 DNA binding site sequence directs glucocorticoid receptor structure and activity. Science, 324, 2009
3G6T	GR gamma DNA-binding domain:FKBP5 16bp complex-34 分子名称: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A, Yamamoto, K.R, Meijsing, S.H. 登録日 2009-02-08 公開日 2009-04-21 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 DNA binding site sequence directs glucocorticoid receptor structure and activity. Science, 324, 2009
2BR0	DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine 分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... 著者 Irimia, A, Loukachevitch, L.V, Egli, M. 登録日 2005-04-28 公開日 2005-06-23 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. J.Biol.Chem., 280, 2005
2BQU	DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine 分子名称: 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... 著者 Irimia, A, Loukachevitch, L.V, Egli, M. 登録日 2005-04-28 公開日 2005-06-23 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. J.Biol.Chem., 280, 2005
2BQR	DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... 著者 Irimia, A, Loukachevitch, L.V, Egli, M. 登録日 2005-04-27 公開日 2005-06-23 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.37 Å) 主引用文献 DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. J.Biol.Chem., 280, 2005
2BQ3	DNA Adduct Bypass Polymerization by Sulfolobus solfataricus Dpo4. Analysis and Crystal Structures of Multiple Base-Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine 分子名称: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3', 5'-D(*TP*CP*AP*TP*GNEP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', CALCIUM ION, ... 著者 Irimia, A, Loukachevitch, L.V, Egli, M. 登録日 2005-04-27 公開日 2005-06-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. J.Biol.Chem., 280, 2005
3G6R	GR DNA binding domain:FKBP5 complex-52, 18bp 分子名称: DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*TP*G)-3'), DNA (5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*TP*G)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A, Yamamoto, K.R, Meijsing, S.H. 登録日 2009-02-08 公開日 2009-04-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 DNA binding site sequence directs glucocorticoid receptor structure and activity. Science, 324, 2009
3G6Q	GR DNA binding domain:FKBP5 binding site complex-9 分子名称: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*CP*CP*CP*TP*GP*TP*TP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*CP*AP*GP*GP*GP*TP*GP*TP*TP*CP*T)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A, Yamamoto, K.R, Meijsing, S.H. 登録日 2009-02-08 公開日 2009-04-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 DNA binding site sequence directs glucocorticoid receptor structure and activity. Science, 324, 2009
3G9P	GR DNA binding domain:Sgk 16bp complex-7 分子名称: DNA (5'-D(*AP*AP*GP*AP*AP*CP*AP*TP*TP*TP*TP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*TP*CP*GP*GP*AP*CP*AP*AP*AP*AP*TP*GP*TP*TP*CP*T)-3'), Glucocorticoid receptor, ... 著者 Pufall, M.A, Yamamoto, K.R, Meijsing, S.H. 登録日 2009-02-13 公開日 2009-04-14 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.652 Å) 主引用文献 DNA binding site sequence directs glucocorticoid receptor structure and activity. Science, 324, 2009
6KNC	PolD-PCNA-DNA (form B) 分子名称: DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ... 著者 Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y. 登録日 2019-08-05 公開日 2020-08-05 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (9.3 Å) 主引用文献 Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. Bmc Biol., 18, 2020
5ZLD	SOLUTION NMR STRUCTURE OF A 14-MER DOUBLE STRANDED DNA DUPLEX CGCGAAATTTCGCG 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') 著者 Ganguly, S, Basu, G. 登録日 2018-03-27 公開日 2018-04-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 DNA Minor Groove-Induced cis - trans Isomerization of a Near-Infrared Fluorescent Probe. Biochemistry, 2021
7CCJ	Sulfur binding domain of SprMcrA complexed with phosphorothioated DNA 分子名称: DNA (5'-D(*GP*GP*AP*TP*CP*AP*TP*C)-3'), HNHc domain-containing protein 著者 Yu, H, Zhao, G, Gan, J, Liu, G, Wu, G, He, X. 登録日 2020-06-17 公開日 2020-07-08 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses. Nucleic Acids Res., 48, 2020
7CCD	Sulfur binding domain of SprMcrA complexed with phosphorothioated DNA 分子名称: DNA (5'-D(*CP*AP*CP*GP*TP*TP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*AS*AP*CP*GP*TP*G)-3'), HNHc domain-containing protein 著者 Yu, H, Li, J, Liu, G, Zhao, G, Wang, Y, Hu, W, Deng, Z, Gan, J, Zhao, Y, He, X. 登録日 2020-06-16 公開日 2020-07-08 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.42 Å) 主引用文献 DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses. Nucleic Acids Res., 48, 2020
6KNB	PolD-PCNA-DNA (form A) 分子名称: DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ... 著者 Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y. 登録日 2019-08-05 公開日 2020-08-05 最終更新日 2021-02-17 実験手法 ELECTRON MICROSCOPY (6.9 Å) 主引用文献 Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. Bmc Biol., 18, 2020
8TLQ	Cryo-EM structure of the Rev1-Polzeta-DNA-dCTP complex 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (30-MER), ... 著者 Malik, R, Aggarwal, A.K. 登録日 2023-07-27 公開日 2024-05-15 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.53 Å) 主引用文献 Cryo-EM structure of the Rev1-Pol zeta holocomplex reveals the mechanism of their cooperativity in translesion DNA synthesis. Nat.Struct.Mol.Biol., 2024
6VAA	Structure of the Fanconi Anemia ID complex bound to ICL DNA 分子名称: DNA (26-MER), DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ... 著者 Pavletich, N.P. 登録日 2019-12-17 公開日 2020-03-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
4Z3C	Zinc finger region of human TET3 in complex with CpG DNA 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3'), Methylcytosine dioxygenase, UNKNOWN ATOM OR ION, ... 著者 Liu, K, Xu, C, Tempel, W, Dong, A, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2015-03-31 公開日 2015-04-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants. Structure, 2017
8VXC	Structure of HamB-DNA complex, conformation 2, from the Escherichia coli Hachiman defense system 分子名称: DNA (40-MER), HamB 著者 Tuck, O.T, Doudna, J.A. 登録日 2024-02-04 公開日 2024-03-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.93 Å) 主引用文献 Hachiman is a genome integrity sensor. Biorxiv, 2024
8VXA	Structure of HamB-DNA complex, conformation 1, from the Escherichia coli Hachiman defense system 分子名称: DNA (40-MER), HamB 著者 Tuck, O.T, Doudna, J.A. 登録日 2024-02-03 公開日 2024-03-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 Hachiman is a genome integrity sensor. Biorxiv, 2024
6VAF	Structure of mono-ubiquitinated FANCD2 bound to non-ubiquitinated FANCI and to DNA 分子名称: DNA (29-MER), Fanconi anemia group D2 protein, Fanconi anemia, ... 著者 Pavletich, N.P. 登録日 2019-12-17 公開日 2020-03-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
4YKL	Hnt3 in complex with DNA and guanosine 分子名称: Aprataxin-like protein, CHLORIDE ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*TP*AP*AP*C)-3'), ... 著者 Jacewicz, A, Chauleau, M, Shuman, S. 登録日 2015-03-04 公開日 2015-06-03 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 DNA3'pp5'G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition. Nucleic Acids Res., 43, 2015
8KGR	Structure of African swine fever virus topoisomerase II in complex with dsDNA 分子名称: DNA (32-MER), DNA (33-MER), DNA topoisomerase 2, ... 著者 Cong, J, Xin, U, Li, X, Chen, Y. 登録日 2023-08-19 公開日 2024-04-03 最終更新日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural insights into the DNA topoisomerase II of the African swine fever virus. Nat Commun, 15, 2024

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