PDB: 47038 件ウェブページステータス検索Chemie searchBIRD

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8FMH	Structure of CBASS Cap5 from Pseudomonas syringae as an activated tetramer with the cyclic dinucleotide 3'2'-c-dGAMP ligand (2 tetramers in the AU) 分子名称: 3'2'-cGAMP, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Rechkoblit, O, Kreitler, D.F, Aggarwal, A.K. 登録日 2022-12-23 公開日 2024-02-07 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Activation of CBASS Cap5 endonuclease immune effector by cyclic nucleotides. Nat.Struct.Mol.Biol., 31, 2024
1Z79	Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5) 分子名称: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3' 著者 Gherghe, C.M, Krahn, J.M, Weeks, K.M. 登録日 2005-03-24 公開日 2005-10-18 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
5Y20	Crystal structure of AL1 PHD finger bound to H3K4me3 分子名称: PEPTIDE FROM HISTONE H3, PHD finger protein ALFIN-LIKE 1, ZINC ION 著者 Zhao, S, Zhang, B, Li, H. 登録日 2017-07-22 公開日 2018-01-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.409 Å) 主引用文献 Systematic Profiling of Histone Readers in Arabidopsis thaliana. Cell Rep, 22, 2018
5OOM	Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA 分子名称: 16S ribosomal RNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Brown, A, Rathore, S, Kimanius, D, Aibara, S, Bai, X.C, Rorbach, J, Amunts, A, Ramakrishnan, V. 登録日 2017-08-08 公開日 2017-09-13 最終更新日 2023-03-15 実験手法 ELECTRON MICROSCOPY (3.03 Å) 主引用文献 Structures of the human mitochondrial ribosome in native states of assembly. Nat. Struct. Mol. Biol., 24, 2017
5Q1P	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000299a 分子名称: 1-cyclohexyl-3-(2-pyridin-4-ylethyl)urea, DNA cross-link repair 1A protein, MALONATE ION, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5Q27	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000421a 分子名称: 5-ethyl-~{N}-[(1-methylpyrazol-4-yl)methyl]thiophene-2-carboxamide, DIMETHYL SULFOXIDE, DNA cross-link repair 1A protein, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5Q1W	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000546a 分子名称: 1~{H}-benzimidazol-2-ylcyanamide, DNA cross-link repair 1A protein, MALONATE ION, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5Q25	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000532a 分子名称: 1~{H}-indol-6-yl-(4-methylpiperazin-1-yl)methanone, DNA cross-link repair 1A protein, MALONATE ION, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5Q24	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000676a 分子名称: 4-[[[(4~{S})-2,2-dimethyloxan-4-yl]amino]methyl]phenol, DNA cross-link repair 1A protein, MALONATE ION, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5Q1X	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000085a 分子名称: 2,4-bis(fluoranyl)-6-(1~{H}-pyrazol-3-yl)phenol, DNA cross-link repair 1A protein, MALONATE ION, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 PanDDA analysis group deposition To Be Published
6XQJ	Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A 分子名称: Protein Vpr,UV excision repair protein RAD23 homolog A, ZINC ION 著者 Byeon, I.-J.L, Calero, G, Wu, Y, Byeon, C.H, Gronenborn, A.M. 登録日 2020-07-09 公開日 2021-11-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of HIV-1 Vpr in complex with the human nucleotide excision repair protein hHR23A. Nat Commun, 12, 2021
5NJ5	E. coli Microcin-processing metalloprotease TldD/E with phosphate bound 分子名称: 1,2-ETHANEDIOL, Metalloprotease PmbA, Metalloprotease TldD, ... 著者 Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K. 登録日 2017-03-28 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Origins of Specificity in the Microcin-Processing Protease TldD/E. Structure, 25, 2017
6LUF	Trans-acting mutant Y290A of the central AAA+ domain of the flagellar regulatory protein FlrC 分子名称: ADENOSINE-5'-DIPHOSPHATE, Flagellar regulatory protein C 著者 Dasgupta, J, Chakraborty, S. 登録日 2020-01-27 公開日 2020-03-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Oligomerization of flagellar regulatory protein FlrC is essential for cis-mediated ATP binding while c-di-GMP prefers its monomeric state To Be Published
2KQH	A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics 分子名称: 5'-D(*CP*GP*GP*GP*CP*GP*GP*GP*CP*GP*CP*GP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3', POTASSIUM ION 著者 Hsu, S.-T.D, Varnai, P, Bugaut, A, Reszka, A.P, Neidle, S, Balasubramanian, S. 登録日 2009-11-05 公開日 2009-11-24 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 A G-rich sequence within the c-kit oncogene promoter forms a parallel G-quadruplex having asymmetric G-tetrad dynamics J.Am.Chem.Soc., 131, 2009
3ZQJ	Mycobacterium tuberculosis UvrA 分子名称: UVRABC SYSTEM PROTEIN A, ZINC ION 著者 Rossi, F, Khanduja, J.S, Bortoluzzi, A, Houghton, J, Sander, P, Guthlein, C, Davis, E.O, Springer, B, Bottger, E.C, Relini, A, Penco, A, Muniyappa, K, Rizzi, M. 登録日 2011-06-09 公開日 2011-06-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 The Biological and Structural Characterization of Mycobacterium Tuberculosis Uvra Provides Novel Insights Into its Mechanism of Action Nucleic Acids Res., 39, 2011
6YES	Crystal structure of type I-D CRISPR-Cas nuclease Cas10d 分子名称: CRISPR-associated protein, CscA, ZINC ION 著者 Brodersen, D.E, Van, L.B, Manav, M.C. 登録日 2020-03-25 公開日 2020-10-28 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein. Nat Commun, 11, 2020
5NJ9	E. coli Microcin-processing metalloprotease TldD/E with DRVY angiotensin fragment bound 分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ASP-ARG-VAL-TYR, ... 著者 Ghilarov, D, Serebryakova, M, Stevenson, C.E.M, Hearnshaw, S.J, Volkov, D, Maxwell, A, Lawson, D.M, Severinov, K. 登録日 2017-03-28 公開日 2017-10-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 The Origins of Specificity in the Microcin-Processing Protease TldD/E. Structure, 25, 2017
1YZD	Crystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pair 分子名称: CALCIUM ION, RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*GP*UP*CP*UP*GP*C)-3' 著者 Gherghe, C.M, Krahn, J.M, Weeks, K.M. 登録日 2005-02-28 公開日 2005-10-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Crystal structures, reactivity and inferred acylation transition States for 2'-amine substituted RNA. J.Am.Chem.Soc., 127, 2005
6C34	Mycobacterium smegmatis DNA flap endonuclease mutant D125N 分子名称: 5'-3' exonuclease, MANGANESE (II) ION 著者 Shuman, S, Goldgur, Y, Carl, A, Uson, M.L. 登録日 2018-01-09 公開日 2018-03-28 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure and mutational analysis of Mycobacterium smegmatis FenA highlight active site amino acids and three metal ions essential for flap endonuclease and 5' exonuclease activities. Nucleic Acids Res., 46, 2018
1GD1	STRUCTURE OF HOLO-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS AT 1.8 ANGSTROMS RESOLUTION 分子名称: HOLO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION 著者 Skarzynski, T, Moody, P.C.E, Wonacott, A.J. 登録日 1987-06-22 公開日 1988-01-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of holo-glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus at 1.8 A resolution. J.Mol.Biol., 193, 1987
4J5S	TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 ADP-ribose complex 分子名称: 1,2-ETHANEDIOL, 1,3,2-DIOXABOROLAN-2-OL, BORATE ION, ... 著者 Schellenberg, M.J, Appel, C.D, Krahn, J, Williams, R.S. 登録日 2013-02-09 公開日 2013-03-27 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease. Embo J., 32, 2013
8H68	Crystal structure of Caenorhabditis elegans NMAD-1 in complex with NOG and Mg(II) 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ... 著者 Shi, Y, Ding, J, Yang, H. 登録日 2022-10-16 公開日 2023-02-22 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Caenorhabditis elegans NMAD-1 functions as a demethylase for actin. J Mol Cell Biol, 15, 2023
5Q1R	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000291a 分子名称: 3-(azepan-1-ylmethyl)-1~{H}-indole, DNA cross-link repair 1A protein, MALONATE ION, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 PanDDA analysis group deposition To Be Published
5Q20	PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000524a 分子名称: 1-[2-methyl-1,3-bis(oxidanyl)propan-2-yl]-3-phenyl-urea, DNA cross-link repair 1A protein, MALONATE ION, ... 著者 Newman, J.A, Aitkenhead, H, Lee, S.Y, Kupinska, K, Burgess-Brown, N, Tallon, R, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O. 登録日 2017-05-15 公開日 2018-08-08 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 PanDDA analysis group deposition To Be Published
6B43	CryoEM structure and atomic model of the Kaposi's sarcoma-associated herpesvirus capsid 分子名称: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ... 著者 Dai, X.H, Gong, D.Y, Sun, R, Zhou, Z.H. 登録日 2017-09-25 公開日 2017-11-08 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structure and mutagenesis reveal essential capsid protein interactions for KSHV replication. Nature, 553, 2018

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