Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5M39
DownloadVisualize
BU of 5m39 by Molmil
Crystal structure of BRD4 BROMODOMAIN 1 IN COMPLEX WITH LIGAND 1
分子名称: 6-(3,4-dimethoxyphenyl)-3-methyl-[1,2,4]triazolo[4,3-b]pyridazine, Bromodomain-containing protein 4
著者Kessler, D, Mayer, M, Engelhardt, H, Wolkerstorfer, B, Geist, L.
登録日2016-10-14
公開日2017-09-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Direct NMR Probing of Hydration Shells of Protein Ligand Interfaces and Its Application to Drug Design.
J. Med. Chem., 60, 2017
8GF5
DownloadVisualize
BU of 8gf5 by Molmil
McrD binds asymmetrically to methyl-coenzyme M reductase improving active site accessibility during assembly
分子名称: 1-THIOETHANESULFONIC ACID, Coenzyme B, FACTOR 430, ...
著者Joiner, A.M.N, Chadwick, G.L, Nayak, D.D.
登録日2023-03-07
公開日2023-06-28
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.
Proc.Natl.Acad.Sci.USA, 120, 2023
5LSX
DownloadVisualize
BU of 5lsx by Molmil
Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives
分子名称: Histone-lysine N-methyltransferase SETD2, ZINC ION, [(2~{R},5~{S})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]-5-azaniumyl-6-oxidanyl-6-oxidanylidene-hexan-2-yl]-(phenylmethyl)azanium
著者Tisi, D, Pathuri, P, Heightman, T.
登録日2016-09-05
公開日2016-10-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives.
ACS Chem. Biol., 11, 2016
5LTZ
DownloadVisualize
BU of 5ltz by Molmil
GmhA_mutant Q175E
分子名称: 1,2-ETHANEDIOL, D-ALTRO-HEPT-2-ULOSE 7-PHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
著者Vivoli, M, Harmer, N.J.
登録日2016-09-07
公開日2017-12-06
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献A half-site multimeric enzyme achieves its cooperativity without conformational changes.
Sci Rep, 7, 2017
5LRD
DownloadVisualize
BU of 5lrd by Molmil
Crystal structure of Glycogen Phosphorylase b in complex with KS242
分子名称: (2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-[5-(4-methylphenyl)-4~{H}-1,2,4-triazol-3-yl]oxane-3,4,5-triol, DIMETHYL SULFOXIDE, Glycogen phosphorylase, ...
著者Kantsadi, A.L, Leonidas, D.D.
登録日2016-08-18
公開日2017-06-14
最終更新日2025-04-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献van der Waals interactions govern C-beta-d-glucopyranosyl triazoles' nM inhibitory potency in human liver glycogen phosphorylase.
J. Struct. Biol., 199, 2017
1W3L
DownloadVisualize
BU of 1w3l by Molmil
ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHAERENS IN COMPLEX WITH CELLOTRI DERIVED-TETRAHYDROOXAZINE
分子名称: ENDOGLUCANASE 5A, GLYCEROL, SULFATE ION, ...
著者Gloster, T.M, Macdonald, J.M, Tarling, C.A, Stick, R.V, Withers, S.W, Davies, G.J.
登録日2004-07-16
公開日2004-09-08
最終更新日2025-10-01
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Structural, Thermodynamic, and Kinetic Analyses of Tetrahydrooxazine-Derived Inhibitors Bound to {Beta}-Glucosidases
J.Biol.Chem., 279, 2004
5LYW
DownloadVisualize
BU of 5lyw by Molmil
CRYSTAL STRUCTURE OF HUMAN METHIONINE AMINOPEPTIDASE-2 IN COMPLEX; WITH AN INHIBITOR 6-((R)-2-o-Tolyloxymethyl-pyrrolidin-1-yl)-9H-purine
分子名称: 6-[(2~{R})-2-[(2-methylphenoxy)methyl]pyrrolidin-1-yl]-7~{H}-purine, MANGANESE (II) ION, Methionine aminopeptidase 2
著者Musil, D, Heinrich, T, Knoechel, T, Lehmann, M.
登録日2016-09-28
公開日2017-08-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Novel reversible methionine aminopeptidase-2 (MetAP-2) inhibitors based on purine and related bicyclic templates.
Bioorg. Med. Chem. Lett., 27, 2017
7O77
DownloadVisualize
BU of 7o77 by Molmil
Structure of the PL6 family alginate lyase Patl3640 from Pseudoalteromonas atlantica T6c
分子名称: GLYCEROL, Poly(Beta-D-mannuronate) lyase
著者Ballut, L, Violot, S, Carrique, L, Aghajari, N.
登録日2021-04-13
公開日2021-07-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.321 Å)
主引用文献Exploring molecular determinants of polysaccharide lyase family 6-1 enzyme activity.
Glycobiology, 31, 2021
5LSY
DownloadVisualize
BU of 5lsy by Molmil
Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives
分子名称: Histone-lysine N-methyltransferase SETD2, THIOCYANATE ION, ZINC ION, ...
著者Tisi, D, Pathuri, P, Heightman, T.
登録日2016-09-05
公開日2016-10-12
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives.
ACS Chem. Biol., 11, 2016
7ODA
DownloadVisualize
BU of 7oda by Molmil
OXA-48-like Beta-lactamase OXA-436
分子名称: 1,2-ETHANEDIOL, Beta-lactamase, CHLORIDE ION
著者Lund, B.A, Thomassen, A.M, Carlsen, T.J.W, Leiros, H.K.S.
登録日2021-04-29
公開日2021-09-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.796 Å)
主引用文献Biochemical and biophysical characterization of the OXA-48-like carbapenemase OXA-436.
Acta Crystallogr.,Sect.F, 77, 2021
5LSS
DownloadVisualize
BU of 5lss by Molmil
Structure of the Epigenetic Oncogene MMSET and inhibition by N-Alkyl Sinefungin Derivatives
分子名称: Histone-lysine N-methyltransferase SETD2, THIOCYANATE ION, ZINC ION, ...
著者Tisi, D, Pathuri, P.
登録日2016-09-05
公開日2016-10-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives.
ACS Chem. Biol., 11, 2016
8GLB
DownloadVisualize
BU of 8glb by Molmil
Selenomethionine Derivatized Citrate Synthase (CitA) in Mycobacterium tuberculosis with Pyruvate
分子名称: 1,2-ETHANEDIOL, PYRUVIC ACID, citrate synthase
著者Pathirage, R, Ronning, D, Favrot, L.
登録日2023-03-21
公開日2023-06-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Mycobacterium tuberculosis CitA activity is modulated by cysteine oxidation and pyruvate binding.
Rsc Med Chem, 14, 2023
8GMK
DownloadVisualize
BU of 8gmk by Molmil
Pyruvate bound structure of Citrate Synthase (CitA) in Mycobacterium Tuberculosis
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, PYRUVIC ACID, ...
著者Pathirage, R, Ronning, D, Yamsek, M.
登録日2023-03-26
公開日2023-06-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Mycobacterium tuberculosis CitA activity is modulated by cysteine oxidation and pyruvate binding.
Rsc Med Chem, 14, 2023
7N8W
DownloadVisualize
BU of 7n8w by Molmil
Crystal structure of ERI2 nuclease bound to rAMP
分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ...
著者Thapar, R, Arvai, A.S, Tainer, J.A.
登録日2021-06-15
公開日2022-07-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structure of ERI2 nuclease bound to rAMP
To Be Published
7NU3
DownloadVisualize
BU of 7nu3 by Molmil
Crystal Structure of Neisseria gonorrhoeae LeuRS E169G mutant in Complex with ATP and L-leucinol
分子名称: 1,2-ETHANEDIOL, 2-AMINO-4-METHYL-PENTAN-1-OL, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Pang, L, Strelkov, S.V, Weeks, S.D.
登録日2021-03-11
公開日2022-08-31
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Partitioning of the initial catalytic steps of leucyl-tRNA synthetase is driven by an active site peptide-plane flip.
Commun Biol, 5, 2022
5LL4
DownloadVisualize
BU of 5ll4 by Molmil
Crystal structure of human carbonic anhydrase isozyme II with 4-(1H-benzimidazol-1-ylacetyl)benzenesulfonamide
分子名称: 4-[2-(benzimidazol-1-yl)ethanoyl]benzenesulfonamide, BICINE, Carbonic anhydrase 2, ...
著者Smirnov, A, Manakova, E, Grazulis, S.
登録日2016-07-26
公開日2017-08-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Combinatorial Design of Isoform-Selective N-Alkylated Benzimidazole-Based Inhibitors of Carbonic Anhydrases
Chemistryselect, 2017
5LXS
DownloadVisualize
BU of 5lxs by Molmil
Tubulin-KS-1-199-32 complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
著者Prota, A.E, Steinmetz, M.O.
登録日2016-09-22
公開日2017-09-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Basis of Microtubule Stabilization by Discodermolide.
Chembiochem, 18, 2017
5VTU
DownloadVisualize
BU of 5vtu by Molmil
Crystal structure of the A/Hong Kong/1/1968 (H3N2) influenza virus hemagglutinin G225L/L226S mutant apo form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
著者Wu, N.C, Wilson, I.A.
登録日2017-05-18
公開日2017-06-28
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Diversity of Functionally Permissive Sequences in the Receptor-Binding Site of Influenza Hemagglutinin.
Cell Host Microbe, 21, 2017
1J6O
DownloadVisualize
BU of 1j6o by Molmil
Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution
分子名称: ISOPROPYL ALCOHOL, TatD-related deoxyribonuclease
著者Joint Center for Structural Genomics (JCSG)
登録日2002-07-09
公開日2002-10-30
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution
To be published
8FUT
DownloadVisualize
BU of 8fut by Molmil
Crystal structure of Xenopus laevis arrestin 1 - P3121 crystal form
分子名称: S-arrestin
著者Salom, D, Barnes, C.L, Calvert, P.D, Kiser, P.D.
登録日2023-01-18
公開日2024-07-24
最終更新日2024-12-18
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Mechanisms of amphibian arrestin 1 self-association and dynamic distribution in retinal photoreceptors.
J.Biol.Chem., 300, 2024
8FUU
DownloadVisualize
BU of 8fuu by Molmil
Crystal structure of Xenopus laevis arrestin 1 - P3221 crystal form
分子名称: S-arrestin
著者Salom, D, Barnes, C.L, Calvert, P.D, Kiser, P.D.
登録日2023-01-18
公開日2024-07-24
最終更新日2024-12-18
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Mechanisms of amphibian arrestin 1 self-association and dynamic distribution in retinal photoreceptors.
J.Biol.Chem., 300, 2024
7ODC
DownloadVisualize
BU of 7odc by Molmil
CRYSTAL STRUCTURE ORNITHINE DECARBOXYLASE FROM MOUSE, TRUNCATED 37 RESIDUES FROM THE C-TERMINUS, TO 1.6 ANGSTROM RESOLUTION
分子名称: PROTEIN (ORNITHINE DECARBOXYLASE), PYRIDOXAL-5'-PHOSPHATE
著者Kern, A.D, Oliveira, M.A, Coffino, P, Hackert, M.L.
登録日1999-03-03
公開日1999-10-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of mammalian ornithine decarboxylase at 1.6 A resolution: stereochemical implications of PLP-dependent amino acid decarboxylases.
Structure Fold.Des., 7, 1999
5M1E
DownloadVisualize
BU of 5m1e by Molmil
Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor
分子名称: (16~{R})-11,12,14,14-tetramethyl-3,5-bis(oxidanylidene)-8-[(2~{S},3~{S},4~{R})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-1,4,6,8-tetrazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-2(7),9(17),10,12-tetraene-16-sulfonic acid, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, MANGANESE (II) ION, ...
著者Marshall, S.A, Leys, D.
登録日2016-10-07
公開日2017-01-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Oxidative Maturation and Structural Characterization of Prenylated FMN Binding by UbiD, a Decarboxylase Involved in Bacterial Ubiquinone Biosynthesis.
J. Biol. Chem., 292, 2017
4USK
DownloadVisualize
BU of 4usk by Molmil
Unravelling the B. pseudomallei heptokinase WcbL: from Structure to Drug Discovery.
分子名称: CHLORIDE ION, DIMETHYL SULFOXIDE, PUTATIVE SUGAR KINASE, ...
著者Vivoli, M, Isupov, M.N, Nicholas, R, Hill, A, Scott, A, Kosma, P, Prior, J, Harmer, N.J.
登録日2014-07-09
公開日2016-01-13
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Unraveling the B.Pseudomallei Heptokinase Wcbl: From Structure to Drug Discovery.
Chem.Biol., 22, 2015
7OAJ
DownloadVisualize
BU of 7oaj by Molmil
Crystal structure of pseudokinase CASK in complex with compound 7
分子名称: 1,2-ETHANEDIOL, 4-(cyclopentylamino)-2-[(3,4-dichlorophenyl)methylamino]-N-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide, Peripheral plasma membrane protein CASK
著者Chaikuad, A, Russ, N, Knapp, S, Structural Genomics Consortium (SGC)
登録日2021-04-19
公開日2021-05-19
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Design and Development of a Chemical Probe for Pseudokinase Ca 2+ /calmodulin-Dependent Ser/Thr Kinase.
J.Med.Chem., 64, 2021

243083

件を2025-10-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon