Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4B3C
DownloadVisualize
BU of 4b3c by Molmil
Humanised monomeric RadA in complex with 5-hydroxy indole
分子名称: 1H-indol-5-ol, DNA REPAIR AND RECOMBINATION PROTEIN RADA, PHOSPHATE ION
著者Scott, D.E, Ehebauer, M.T, Pukala, T, Marsh, M, Blundell, T.L, Venkitaraman, A.R, Abell, C, Hyvonen, M.
登録日2012-07-23
公開日2013-02-06
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Using a Fragment-Based Approach to Target Protein-Protein Interactions.
Chembiochem, 14, 2013
1IO2
DownloadVisualize
BU of 1io2 by Molmil
Crystal structure of type 2 ribonuclease h from hyperthermophilic archaeon, thermococcus kodakaraensis kod1
分子名称: RIBONUCLEASE HII
著者Muroya, A, Tsuchiya, D, Ishikawa, M, Haruki, M, Morikawa, M.
登録日2000-12-28
公開日2001-04-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Catalytic center of an archaeal type 2 ribonuclease H as revealed by X-ray crystallographic and mutational analyses.
Protein Sci., 10, 2001
6JVF
DownloadVisualize
BU of 6jvf by Molmil
Crystal structure of human apo MTH1
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase
著者Peng, C, Cheng, Y.S.
登録日2019-04-17
公開日2020-10-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.
Bioorg.Chem., 110, 2021
6JVL
DownloadVisualize
BU of 6jvl by Molmil
Crystal structure of human MTH1 in complex with compound MI1014
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, N4-cyclopropyl-5-ethyl-6-(4-methylpiperazin-1-yl)pyrimidine-2,4-diamine
著者Peng, C, Li, Y.H, Cheng, Y.S.
登録日2019-04-17
公開日2020-10-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.
Bioorg.Chem., 110, 2021
1QAE
DownloadVisualize
BU of 1qae by Molmil
THE ACTIVE SITE OF SERRATIA ENDONUCLEASE CONTAINS A CONSERVED MAGNESIUM-WATER CLUSTER
分子名称: MAGNESIUM ION, PROTEIN (EXTRACELLULAR ENDONUCLEASE)
著者Miller, M.D, Krause, K.L.
登録日1999-03-03
公開日1999-05-18
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The active site of Serratia endonuclease contains a conserved magnesium-water cluster.
J.Mol.Biol., 288, 1999
6K1B
DownloadVisualize
BU of 6k1b by Molmil
Crystal structure of EXD2 exonuclease domain soaked in Mn and dGMP
分子名称: Exonuclease 3'-5' domain-containing protein 2, MANGANESE (II) ION
著者Park, J, Lee, C.
登録日2019-05-10
公開日2019-05-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.605 Å)
主引用文献The structure of human EXD2 reveals a chimeric 3' to 5' exonuclease domain that discriminates substrates via metal coordination.
Nucleic Acids Res., 47, 2019
4J5Q
DownloadVisualize
BU of 4j5q by Molmil
TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1, apo structure
分子名称: O-acetyl-ADP-ribose deacetylase 1
著者Schellenberg, M.J, Appel, C.D, Krahn, J, Williams, R.S.
登録日2013-02-09
公開日2013-03-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
Embo J., 32, 2013
3EU7
DownloadVisualize
BU of 3eu7 by Molmil
Crystal Structure of a PALB2 / BRCA2 complex
分子名称: 19meric peptide from Breast cancer type 2 susceptibility protein, GLYCEROL, Partner and localizer of BRCA2
著者Oliver, A.W, Pearl, L.H.
登録日2008-10-09
公開日2009-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for recruitment of BRCA2 by PALB2
Embo Rep., 10, 2009
4J5R
DownloadVisualize
BU of 4j5r by Molmil
TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 bound to ADP-HPD
分子名称: 1,2-ETHANEDIOL, 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE, CHLORIDE ION, ...
著者Schellenberg, M.J, Appel, C.D, Krahn, J, Williams, R.S.
登録日2013-02-09
公開日2013-03-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
Embo J., 32, 2013
2DBV
DownloadVisualize
BU of 2dbv by Molmil
GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE MUTANT WITH ASP 32 REPLACED BY GLY, LEU 187 REPLACED BY ALA, AND PRO 188 REPLACED BY SER COMPLEXED WITH NADP+
分子名称: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, SULFATE ION
著者Didierjean, C, Rahuel-Clermont, S, Vitoux, B, Dideberg, O, Branlant, G, Aubry, A.
登録日1996-12-19
公開日1997-07-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A crystallographic comparison between mutated glyceraldehyde-3-phosphate dehydrogenases from Bacillus stearothermophilus complexed with either NAD+ or NADP+.
J.Mol.Biol., 268, 1997
3GZ8
DownloadVisualize
BU of 3gz8 by Molmil
Cocrystal structure of NUDIX domain of Shewanella oneidensis NrtR complexed with ADP ribose
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, MutT/nudix family protein
著者Huang, N, Zhang, H.
登録日2009-04-06
公開日2009-06-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Structure and function of an ADP-ribose-dependent transcriptional regulator of NAD metabolism
Structure, 17, 2009
2MKD
DownloadVisualize
BU of 2mkd by Molmil
Human JAZ ZF3 Residues 168-227
分子名称: ZINC ION, Zinc finger protein 346
著者Wright, P, Dyson, J, Burge, R, Martinez-Yamout, M.
登録日2014-02-05
公開日2014-03-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural Characterization of Interactions between the Double-Stranded RNA-Binding Zinc Finger Protein JAZ and Nucleic Acids.
Biochemistry, 53, 2014
3VIR
DownloadVisualize
BU of 3vir by Molmil
Crystal strcture of Swi5 from fission yeast
分子名称: Mating-type switching protein swi5, octyl beta-D-glucopyranoside
著者Kuwabara, N, Yamada, N, Hashimoto, H, Sato, M, Iwasaki, H, Shimizu, T.
登録日2011-10-06
公開日2012-08-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
1ISQ
DownloadVisualize
BU of 1isq by Molmil
Pyrococcus furiosus PCNA complexed with RFCL PIP-box peptide
分子名称: Proliferating Cell Nuclear Antigen, replication factor C large subunit
著者Matsumiya, S, Ishino, S, Ishino, Y, Morikawa, K.
登録日2001-12-19
公開日2002-10-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus
Genes Cells, 7, 2002
8CLK
DownloadVisualize
BU of 8clk by Molmil
TFIIIC TauA complex
分子名称: General transcription factor 3C polypeptide 1, General transcription factor 3C polypeptide 3, General transcription factor 3C polypeptide 5, ...
著者Seifert-Davila, W, Girbig, M, Hauptmann, L, Hoffmann, T, Eustermann, S, Mueller, C.W.
登録日2023-02-16
公開日2023-06-21
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural insights into human TFIIIC promoter recognition.
Sci Adv, 9, 2023
7EEY
DownloadVisualize
BU of 7eey by Molmil
The structure of the N-terminal doamin of the Schizosaccharomyces pombe Tad2 adenosine deaminase
分子名称: SULFATE ION, tRNA-specific adenosine deaminase subunit tad2
著者Xie, W, Liu, X, Zhou, J.
登録日2021-03-19
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Functional and structural investigation of N-terminal domain of the SpTad2/3 heterodimeric tRNA deaminase.
Comput Struct Biotechnol J, 19, 2021
8FOM
DownloadVisualize
BU of 8fom by Molmil
Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Nguyen, H.A, Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M.
登録日2023-01-02
公開日2023-03-29
最終更新日2023-04-26
実験手法X-RAY DIFFRACTION (3.58 Å)
主引用文献Structural basis for reduced ribosomal A-site fidelity in response to P-site codon-anticodon mismatches.
J.Biol.Chem., 299, 2023
7ET3
DownloadVisualize
BU of 7et3 by Molmil
C5 portal vertex in the enveloped virion capsid
分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
著者Li, Z, Yu, X.
登録日2021-05-12
公開日2021-07-14
最終更新日2021-08-18
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural basis for genome packaging, retention, and ejection in human cytomegalovirus.
Nat Commun, 12, 2021
8FZY
DownloadVisualize
BU of 8fzy by Molmil
Bacteroides spp. Ntox15 domain type VI secretion system effector Tde1
分子名称: 1,2-ETHANEDIOL, Ntox15 domain-containing protein, SULFATE ION
著者Bosch, D.E, Mougous, J.D.
登録日2023-01-30
公開日2023-07-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales.
Mbio, 14, 2023
1YEL
DownloadVisualize
BU of 1yel by Molmil
Structure of the hypothetical Arabidopsis thaliana protein At1g16640.1
分子名称: At1g16640
著者Peterson, F.C, Waltner, J.K, Lytle, B.L, Volkman, B.F, Center for Eukaryotic Structural Genomics (CESG)
登録日2004-12-28
公開日2005-01-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the B3 domain from Arabidopsis thaliana protein At1g16640
Protein Sci., 14, 2005
7FJ1
DownloadVisualize
BU of 7fj1 by Molmil
Cryo-EM structure of pseudorabies virus C-capsid
分子名称: Capsid vertex component 1, DNA packaging tegument protein UL25, Major capsid protein, ...
著者Zheng, Q, Li, S, Zha, Z, Sun, H.
登録日2021-08-02
公開日2022-06-22
実験手法ELECTRON MICROSCOPY (4.43 Å)
主引用文献Structures of pseudorabies virus capsids.
Nat Commun, 13, 2022
8CX2
DownloadVisualize
BU of 8cx2 by Molmil
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 2
分子名称: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, Elongin-B, ...
著者Li, Y, Langley, C, Azumaya, C.M, Echeverria, I, Chesarino, N.M, Emerman, M, Cheng, Y, Gross, J.D.
登録日2022-05-19
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The structural basis for HIV-1 Vif antagonism of human APOBEC3G.
Nature, 615, 2023
8CX0
DownloadVisualize
BU of 8cx0 by Molmil
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex
分子名称: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, Elongin-B, ...
著者Li, Y, Langley, C, Azumaya, C.M, Echeverria, I, Chesarino, N.M, Emerman, M, Cheng, Y, Gross, J.D.
登録日2022-05-19
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献The structural basis for HIV-1 Vif antagonism of human APOBEC3G.
Nature, 615, 2023
8CX1
DownloadVisualize
BU of 8cx1 by Molmil
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 1
分子名称: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, Elongin-B, ...
著者Li, Y, Langley, C, Azumaya, C.M, Echeverria, I, Chesarino, N.M, Emerman, M, Cheng, Y, Gross, J.D.
登録日2022-05-19
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献The structural basis for HIV-1 Vif antagonism of human APOBEC3G.
Nature, 615, 2023
3SWR
DownloadVisualize
BU of 3swr by Molmil
Structure of human DNMT1 (601-1600) in complex with Sinefungin
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA (cytosine-5)-methyltransferase 1, ...
著者Hashimoto, H, Cheng, X.
登録日2011-07-14
公開日2011-08-10
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Structure of human DNMT1 (residues 600-1600) in complex with Sinefungin
To be Published

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon