PDB: 2682 件ウェブページステータス検索Chemie searchBIRD

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5GAE	RNC in complex with a translocating SecYEG 分子名称: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Jomaa, A, Boehringer, D, Leibundgut, M, Ban, N. 登録日 2015-11-25 公開日 2016-01-27 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon. Nat Commun, 7, 2016
7XHB	Structure of the SecA/SecYE/proOmpA(4Y)-sfGFP complex with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translocase subunit SecA, ... 著者 Dong, L, Li, L. 登録日 2022-04-07 公開日 2023-01-11 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Structural basis of SecA-mediated protein translocation. Proc.Natl.Acad.Sci.USA, 120, 2023
5VPO	The 70S P-site ASL SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2018-11-07 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6SPG	Pseudomonas aeruginosa 70s ribosome from a clinical isolate 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Halfon, Y, Jimenez-Fernande, A, La Ros, R, Espinos, R, Krogh Johansen, H, Matzov, D, Eyal, Z, Bashan, A, Zimmerman, E, Belousoff, M, Molin, S, Yonath, A. 登録日 2019-09-01 公開日 2019-10-16 最終更新日 2019-11-06 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate. Proc.Natl.Acad.Sci.USA, 116, 2019
6HUM	Structure of the photosynthetic complex I from Thermosynechococcus elongatus 分子名称: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, IRON/SULFUR CLUSTER, ... 著者 Schuller, J.M, Schuller, S.K, Kurisu, G, Engel, B.D, Nowaczyk, M.M. 登録日 2018-10-09 公開日 2019-01-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer. Science, 363, 2019
4V8X	Structure of Thermus thermophilus ribosome 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Feng, S, Chen, Y, Kamada, K, Wang, H, Tang, K, Wang, M, Gao, Y.G. 登録日 2013-07-19 公開日 2014-07-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Yoeb-Ribosome Structure: A Canonical Rnase that Requires the Ribosome for its Specific Activity. Nucleic Acids Res., 41, 2013
5MDY	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 James, N.R, Brown, A, Gordiyenko, Y, Ramakrishnan, V. 登録日 2016-11-13 公開日 2016-12-21 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Translational termination without a stop codon. Science, 354, 2016
5LZV	Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S. 登録日 2016-10-02 公開日 2016-11-30 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes. Cell, 167, 2016
8BR8	Giardia ribosome in POST-T state (A1) 分子名称: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-22 公開日 2023-03-15 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
7XHA	Structure of the SecA/SecYE/proOmpA(4Y)-sfGFP complex with ADP.BeF3-. 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... 著者 Dong, L, Li, L. 登録日 2022-04-07 公開日 2023-01-11 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Structural basis of SecA-mediated protein translocation. Proc.Natl.Acad.Sci.USA, 120, 2023
1VG6	Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132A/L128A/I123A mutant 分子名称: octoprenyl-diphosphate synthase 著者 Guo, R.T, Kuo, C.J, Ko, T.P, Chou, C.C, Liang, P.H, Wang, A.H.-J. 登録日 2004-04-23 公開日 2004-05-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 A molecular ruler for chain elongation catalyzed by octaprenyl pyrophosphate synthase and its structure-based engineering to produce unprecedented long chain trans-prenyl products Biochemistry, 43, 2004
6GSK	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Yusupov, M, Yusupova, G. 登録日 2018-06-14 公開日 2018-07-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.36 Å) 主引用文献 Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria. Nucleic Acids Res., 46, 2018
7Z7R	Complex I from E. coli, LMNG-purified, Apo, Open-ready state 分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, CALCIUM ION, EICOSANE, ... 著者 Kravchuk, V, Kampjut, D, Sazanov, L. 登録日 2022-03-16 公開日 2022-09-21 最終更新日 2022-10-05 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 A universal coupling mechanism of respiratory complex I. Nature, 609, 2022
7QGN	Structure of the SmrB-bound E. coli disome - stalled 70S ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R. 登録日 2021-12-09 公開日 2022-04-27 実験手法 ELECTRON MICROSCOPY (3.37 Å) 主引用文献 Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria. Nature, 603, 2022
4WFA	The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 23S rRNA, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Eyal, Z, Matzov, D, Krupkin, M, Wekselman, I, Zimmerman, E, Rozenberg, H, Bashan, A, Yonath, A.E. 登録日 2014-09-14 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.392 Å) 主引用文献 Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus. Proc.Natl.Acad.Sci.USA, 112, 2015
6NSH	Modified ASL proline bound to Thermus thermophilus 70S (near-cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M. 登録日 2019-01-24 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.397 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
8ETG	Fkbp39 associated 60S nascent ribosome State 3 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-17 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
6Q8W	Respiratory complex I from Thermus thermophilus with bound Aureothin. 分子名称: Aureothin, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ... 著者 Gutierrez-Fernandez, J, Minhas, G.S, Sazanov, L.A. 登録日 2018-12-16 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Key role of quinone in the mechanism of respiratory complex I. Nat Commun, 11, 2020
5ZEP	M. smegmatis hibernating state 70S ribosome structure 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. 登録日 2018-02-27 公開日 2018-09-26 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
4V84	Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. 分子名称: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. 登録日 2010-12-13 公開日 2014-07-09 最終更新日 2019-07-17 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 108, 2011
1VG7	Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132A/L128A/I123A/D62A mutant 分子名称: octoprenyl-diphosphate synthase 著者 Guo, R.T, Kuo, C.J, Ko, T.P, Chou, C.C, Liang, P.H, Wang, A.H.-J. 登録日 2004-04-23 公開日 2004-05-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 A molecular ruler for chain elongation catalyzed by octaprenyl pyrophosphate synthase and its structure-based engineering to produce unprecedented long chain trans-prenyl products Biochemistry, 43, 2004
4V9N	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. 分子名称: 16S rRNA (1504-MER), 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Santos, N, Zhu, J, Donohue, J.P, Korostelev, A.A, Noller, H.F. 登録日 2013-04-26 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal Structure of the 70S Ribosome Bound with the Q253P Mutant Form of Release Factor RF2. Structure, 21, 2013
6Z6J	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6Z6K	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
6R86	Yeast Vms1-60S ribosomal subunit complex (post-state) 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Su, T, Izawa, T, Cheng, J, Yamashita, Y, Berninghausen, O, Inada, T, Neupert, W, Beckmann, R. 登録日 2019-03-31 公開日 2019-07-31 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis. Nature, 570, 2019

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