PDB: 486 件ウェブページステータス検索Chemie searchBIRD

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8CDU	Rnase R bound to a 30S degradation intermediate (main state) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. 登録日 2023-02-01 公開日 2023-12-20 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
8CED	Rnase R bound to a 30S degradation intermediate (State I - head-turning) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. 登録日 2023-02-01 公開日 2023-12-20 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.15 Å) 主引用文献 Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
8CDV	Rnase R bound to a 30S degradation intermediate (state II) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Paternoga, H, Dimitrova-Paternoga, L, Wilson, D.N. 登録日 2023-02-01 公開日 2023-12-20 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.73 Å) 主引用文献 Structural basis of ribosomal 30S subunit degradation by RNase R. Nature, 626, 2024
7UIO	Mediator-PIC Early (Composite Model) 分子名称: ALANINE, ASPARTIC ACID, DNA (37-MER), ... 著者 Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K. 登録日 2022-03-29 公開日 2023-03-01 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis of a transcription pre-initiation complex on a divergent promoter. Mol.Cell, 83, 2023
7UI9	Core Mediator-PICearly (Copy A) 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Gorbea Colon, J.J, Chen, S.-F, Tsai, K.L, Murakami, K. 登録日 2022-03-28 公開日 2023-02-15 最終更新日 2023-03-08 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis of a transcription pre-initiation complex on a divergent promoter. Mol.Cell, 83, 2023
8CRO	Cryo-EM structure of Pyrococcus furiosus transcription elongation complex 分子名称: DNA Non-Template Strand, DNA Template Strand, DNA-directed RNA polymerase subunit Rpo10, ... 著者 Tarau, D.M, Grunberger, F, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. 登録日 2023-03-08 公開日 2024-04-17 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024
8CAS	Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) 分子名称: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... 著者 Ikeuchi, K, Buschauer, R, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2023-01-24 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun, 14, 2023
8YFQ	Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex 分子名称: 5'-3' exoribonuclease, DNA (90-mer), DNA-directed RNA polymerase subunit, ... 著者 Murayama, Y, Yanagisawa, T, Ehara, H, Sekine, S. 登録日 2024-02-25 公開日 2024-09-25 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex. Nat Commun, 15, 2024
8WWP	PNPase mutant of Mycobacterium tuberculosis 分子名称: Bifunctional guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase 著者 Wang, N, Sheng, Y.N, Liu, Y.T. 登録日 2023-10-26 公開日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.12 Å) 主引用文献 Cryo-EM structures of Mycobacterium tuberculosis polynucleotide phosphorylase suggest a potential mechanism for its RNA substrate degradation. Arch.Biochem.Biophys., 754, 2024
8WX0	PNPase of M.tuberculosis with its RNA substrate 分子名称: Bifunctional guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase, RNA (24-mer) 著者 Wang, N, Sheng, Y.N. 登録日 2023-10-27 公開日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM structures of Mycobacterium tuberculosis polynucleotide phosphorylase suggest a potential mechanism for its RNA substrate degradation. Arch.Biochem.Biophys., 754, 2024
9BCT	Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 44 nt RNA 分子名称: DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit B, ... 著者 You, L, Ebright, R.H. 登録日 2024-04-09 公開日 2024-07-31 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structural basis of archaeal FttA-dependent transcription termination. Nature, 2024
8YFR	Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft 分子名称: 5'-3' exoribonuclease, DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Murayama, Y, Yanagisawa, T, Ehara, H, Sekine, S. 登録日 2024-02-25 公開日 2024-09-25 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex. Nat Commun, 15, 2024
8WXF	PNPase of Mycobacterium tuberculosis 分子名称: Bifunctional guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase 著者 Wang, N, Sheng, Y.N, Liu, Y.T. 登録日 2023-10-29 公開日 2024-07-03 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Cryo-EM structures of Mycobacterium tuberculosis polynucleotide phosphorylase suggest a potential mechanism for its RNA substrate degradation. Arch.Biochem.Biophys., 754, 2024
9JA1	The RNA polymerase II elongation complex from Saccharomyces cerevisiae 分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*GP*CP*TP*CP*CP*TP*TP*CP*TP*CP*CP*CP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*T)-3'), DNA (5'-D(P*TP*GP*GP*GP*AP*GP*AP*AP*GP*GP*AP*GP*C)-3'), ... 著者 Yi, G, Ma, J, Zhang, P. 登録日 2024-08-23 公開日 2024-09-04 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 The RNA polymerase II elongation complex from Saccharomyces cerevisiae To Be Published
9FMD	Integrative model of the human post-catalytic spliceosome (P-complex) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ... 著者 Rothe, P, Plaschka, C, Vorlaender, M.K. 登録日 2024-06-05 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Mechanism for the initiation of spliceosome disassembly. Nature, 2024
9BCU	Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex containing 52 nt RNA 分子名称: DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit A', DNA-directed RNA polymerase subunit B, ... 著者 You, L, Ebright, R.H. 登録日 2024-04-09 公開日 2024-07-31 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Structural basis of archaeal FttA-dependent transcription termination. Nature, 2024
8JCH	Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 1 (Pol II Rat1-PTTC1) 分子名称: 5'-3' exoribonuclease 2, DNA (38-MER), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Zeng, Y, Zhang, Y. 登録日 2023-05-11 公開日 2024-01-31 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural basis of exoribonuclease-mediated mRNA transcription termination. Nature, 628, 2024
8OEU	Structure of the mammalian Pol II-SPT6 complex (composite structure, Structure 4) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. 登録日 2023-03-13 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8OF0	Structure of the mammalian Pol II-SPT6-Elongin complex, Structure 1 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. 登録日 2023-03-13 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8OEV	Structure of the mammalian Pol II-SPT6-Elongin complex, lacking ELOA latch (composite structure, structure 3) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. 登録日 2023-03-13 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8OEW	Structure of the mammalian Pol II-Elongin complex, lacking the ELOA latch (composite structure, structure 2) 分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Chen, Y, Kokic, G, Dienemann, C, Dybkov, O, Urlaub, H, Cramer, P. 登録日 2023-03-13 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structure of the transcribing RNA polymerase II-Elongin complex. Nat.Struct.Mol.Biol., 30, 2023
8K5P	Cryo-EM structure of yeast Rat1-bound Pol II pre-termination transcription complex 2 (Pol II Rat1-PTTC2) 分子名称: 5'-3' exoribonuclease 2, DNA (38-MER), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Zeng, Y, Zhang, Y. 登録日 2023-07-23 公開日 2024-01-31 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis of exoribonuclease-mediated mRNA transcription termination. Nature, 628, 2024
8JH2	RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome 分子名称: DNA (218-MER), DNA (40-MER), DNA-directed RNA polymerase subunit, ... 著者 Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2023-05-22 公開日 2023-11-29 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
8JH3	RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2023-05-22 公開日 2023-11-29 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
8JH4	RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. 登録日 2023-05-22 公開日 2023-11-29 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023

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