PDB: 394 件ウェブページステータス検索Chemie searchBIRD

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7T4U	Crystal Structure of cGMP-dependent Protein Kinase 分子名称: 3-amino-4-({(2S,3S)-3-[(1S)-1-(3,5-dichlorophenyl)-2-hydroxyethoxy]-2-phenylpiperidin-1-yl}methyl)benzoic acid, cGMP-dependent protein kinase 1 著者 Zebisch, M, Silvestre, L, Fischmann, T.O. 登録日 2021-12-10 公開日 2023-06-14 最終更新日 2023-07-12 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Selective small molecule activation of PKG1alpha: structure and function Commun Biol, 2023
1RUO	CATABOLITE GENE ACTIVATOR PROTEIN (CAP) MUTANT/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*G )-3'), DNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3'), ... 著者 Parkinson, G.N, Ebright, R.H, Berman, H.M. 登録日 1996-05-26 公開日 1997-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Aromatic hydrogen bond in sequence-specific protein DNA recognition. Nat.Struct.Biol., 3, 1996
6PB4	The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at the state 2 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Shi, W. 登録日 2019-06-13 公開日 2020-03-18 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.35 Å) 主引用文献 Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
1ZYB	Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482 at 2.15 A resolution 分子名称: GLYCEROL, transcription regulator, CRP family 著者 Joint Center for Structural Genomics (JCSG) 登録日 2005-06-09 公開日 2005-07-19 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482 at 2.15 A resolution To be published
1ZRF	4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6C;17G]ICAP38 DNA 分子名称: 1,4-DIETHYLENE DIOXIDE, 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
6PB5	The E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Shi, W. 登録日 2019-06-13 公開日 2020-03-18 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.52 Å) 主引用文献 Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
6PBY	Single particle cryo-EM structure of the voltage-gated K+ channel Eag1 3-13 deletion mutant bound to calmodulin (conformation 1) 分子名称: Calmodulin-1, Potassium voltage-gated channel subfamily H member 1 著者 Whicher, J.R, MacKinnon, R. 登録日 2019-06-14 公開日 2019-09-18 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.67 Å) 主引用文献 Regulation of Eag1 gating by its intracellular domains. Elife, 8, 2019
6B6H	The cryo-EM structure of a bacterial class I transcription activation complex 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Hong, C, Huang, R, Yu, Z, Steitz, T.A. 登録日 2017-10-02 公開日 2017-11-15 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of bacterial transcription activation. Science, 358, 2017
1ZRE	4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6G;17C]ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*GP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*CP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
1ZRC	4 Crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
6PBX	Single particle cryo-EM structure of the voltage-gated K+ channel Eag1 3-13 deletion mutant bound to calmodulin (conformation 2) 分子名称: Calmodulin-1, Potassium voltage-gated channel subfamily H member 1 著者 Whicher, J.R, MacKinnon, R. 登録日 2019-06-14 公開日 2019-09-18 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Regulation of Eag1 gating by its intracellular domains. Elife, 8, 2019
6PB6	The E. coli class-II CAP-dependent transcription activation complex at the state 2 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Shi, W. 登録日 2019-06-13 公開日 2020-03-18 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.29 Å) 主引用文献 Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
2XHK	Crystal structure of transcription factor NtcA from Synechococcus elongatus bound to 2-oxoglutarate 分子名称: 2-OXOGLUTARIC ACID, GLOBAL NITROGEN REGULATOR 著者 Llacer, J.L, Castells, M.A, Rubio, V. 登録日 2010-06-17 公開日 2010-08-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Basis for the Regulation of Ntca-Dependent Transcription by Proteins Pipx and Pii. Proc.Natl.Acad.Sci.USA, 107, 2010
2FMY	CO-dependent transcription factor CooA from Carboxydothermus hydrogenoformans (Imidazole-bound form) 分子名称: IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, carbon monoxide oxidation system transcription regulator CooA-1 著者 Higuchi, Y, Komori, H. 登録日 2006-01-10 公開日 2007-01-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structure of CO-sensing Transcription Activator CooA Bound to Exogenous Ligand Imidazole J.Mol.Biol., 367, 2007
2BYV	Structure of the cAMP responsive exchange factor Epac2 in its auto- inhibited state 分子名称: RAP GUANINE NUCLEOTIDE EXCHANGE FACTOR 4 著者 Rehmann, H, Wittinghofer, A, Bos, J.L. 登録日 2005-08-08 公開日 2006-02-02 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure of the Cyclic-AMP Responsive Exchange Factor Epac2 in its Auto-Inhibited State Nature, 439, 2006
1ZRD	4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6A;17T]ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*AP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*TP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
6BYS	Structures of the PKA RI alpha holoenzyme with the FLHCC driver J-PKAc alpha or native PRKAc alpha 分子名称: cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type I-alpha regulatory subunit 著者 Cao, B, Lu, T.W, Martinez Fiesco, J.A, Tomasini, M, Fan, L, Simon, S.M, Taylor, S.S, Zhang, P. 登録日 2017-12-21 公開日 2019-04-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (4.75 Å) 主引用文献 Structures of the PKA RI alpha Holoenzyme with the FLHCC Driver J-PKAc alpha or Wild-Type PKAc alpha. Structure, 27, 2019
6QCY	MloK1 model from single particle analysis of 2D crystals, class 2 (intermediate conformation) 分子名称: Cyclic nucleotide-gated potassium channel mll3241, POTASSIUM ION 著者 Righetto, R, Biyani, N, Kowal, J, Chami, M, Stahlberg, H. 登録日 2018-12-31 公開日 2019-04-24 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Retrieving high-resolution information from disordered 2D crystals by single-particle cryo-EM. Nat Commun, 10, 2019
2GAU	Crystal structure of transcriptional regulator, Crp/Fnr family from Porphyromonas gingivalis (APC80792), Structural genomics, MCSG 分子名称: transcriptional regulator, Crp/Fnr family 著者 Rotella, F.J, Zhang, R.G, Mulligan, R, Moy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-03-09 公開日 2006-04-11 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The 1.9-A crystal structure of transcriptional regulator, Crp/Fnr family from Porphyromonas gingivalis To be Published
7TJ5	SthK closed state, cAMP-bound in the presence of POPA 分子名称: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Putative transcriptional regulator, ... 著者 Schmidpeter, P.A, Nimigean, C.M. 登録日 2022-01-14 公開日 2022-10-26 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.41 Å) 主引用文献 Anionic lipids unlock the gates of select ion channels in the pacemaker family. Nat.Struct.Mol.Biol., 29, 2022
7TKT	SthK closed state, cAMP-bound in the presence of detergent 分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Putative transcriptional regulator, ... 著者 Rheinberger, J, Schmidpeter, P.A, Nimigean, C.M. 登録日 2022-01-17 公開日 2022-10-26 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Anionic lipids unlock the gates of select ion channels in the pacemaker family. Nat.Struct.Mol.Biol., 29, 2022
6QD2	MloK1 model from single particle analysis of 2D crystals, class 6 (intermediate compact conformation) 分子名称: Cyclic nucleotide-gated potassium channel mll3241, POTASSIUM ION 著者 Righetto, R, Biyani, N, Kowal, J, Chami, M, Stahlberg, H. 登録日 2018-12-31 公開日 2019-04-24 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Retrieving high-resolution information from disordered 2D crystals by single-particle cryo-EM. Nat Commun, 10, 2019
7TJ6	SthK open state, cAMP-bound in the presence of POPA 分子名称: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Putative transcriptional regulator, ... 著者 Schmidpeter, P.A, Nimigean, C.M. 登録日 2022-01-14 公開日 2022-10-26 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Anionic lipids unlock the gates of select ion channels in the pacemaker family. Nat.Struct.Mol.Biol., 29, 2022
2XKP	NtcA from Synechococcus elongatus: active and inactive 分子名称: 2-OXOGLUTARIC ACID, GLOBAL NITROGEN REGULATOR 著者 Llacer, J.L, Castells, M.A, Rubio, V. 登録日 2010-07-11 公開日 2010-08-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural Basis for the Regulation of Ntca-Dependent Transcription by Proteins Pipx and Pii. Proc.Natl.Acad.Sci.USA, 107, 2010
2XKO	Crystal structure of the complex of NtcA with its transcriptional co- activator PipX 分子名称: 2-OXOGLUTARIC ACID, GLOBAL NITROGEN REGULATOR, PIPX 著者 Llacer, J.L, Castells, M.A, Rubio, V. 登録日 2010-07-11 公開日 2010-08-18 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural Basis for the Regulation of Ntca-Dependent Transcription by Proteins Pipx and Pii. Proc.Natl.Acad.Sci.USA, 107, 2010

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