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8FBI
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BU of 8fbi by Molmil
Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains
分子名称: KWOCA_39
著者Wang, J.Y, Khmelinskaia, A, Bera, A.K, King, N.P.
登録日2022-11-29
公開日2023-03-22
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3.61 Å)
主引用文献Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains.
Proc.Natl.Acad.Sci.USA, 120, 2023
2JWU
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BU of 2jwu by Molmil
Solution NMR structures of two designed proteins with 88% sequence identity but different fold and function
分子名称: Gb88
著者He, Y, Chen, Y, Alexander, P, Bryan, P, Orban, J.
登録日2007-10-25
公開日2008-09-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献NMR structures of two designed proteins with high sequence identity but different fold and function
Proc.Natl.Acad.Sci.Usa, 105, 2008
8CCR
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BU of 8ccr by Molmil
Crystal structure of the T19D mutant of the de novo diheme binding 4D2
分子名称: (2S)-2-hydroxybutanedioic acid, 4D2 (mutant T19D), CHLORIDE ION, ...
著者Barringer, R, Anderson, R.
登録日2023-01-27
公開日2023-08-09
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An expandable, modular de novo protein platform for precision redox engineering.
Proc.Natl.Acad.Sci.USA, 120, 2023
1L4X
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BU of 1l4x by Molmil
Octameric de novo designed peptide
分子名称: CHLORIDE ION, MAGNESIUM ION, SIN-ASP-GLU-LEU-GLU-ARG-ALA-ILE-ARG-GLU-LEU-ALA-ALA-ARG-ILE-LYS-NH2
著者Meier, M, Lustig, A, Aebi, U, Burkhard, P.
登録日2002-03-06
公開日2002-11-13
最終更新日2024-04-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Removing an interhelical salt bridge abolishes coiled-coil formation in a de novo designed peptide
J.STRUCT.BIOL., 137, 2002
7OT8
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BU of 7ot8 by Molmil
DeNovoTIM6-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 2)
分子名称: DeNovoTIM6-SB, SULFATE ION
著者Kordes, S, Romero-Romero, S, Hocker, B.
登録日2021-06-09
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
Protein Sci., 31, 2022
7OSU
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BU of 7osu by Molmil
sTIM11noCys-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 1)
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Romero-Romero, S, Kordes, S, Hocker, B.
登録日2021-06-09
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
Protein Sci., 31, 2022
7OT7
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BU of 7ot7 by Molmil
sTIM11noCys-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 2)
分子名称: sTIM11noCys-SB
著者Romero-Romero, S, Kordes, S, Hocker, B.
登録日2021-06-09
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
Protein Sci., 31, 2022
7P12
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BU of 7p12 by Molmil
DeNovoTIM13-SB, a de novo designed TIM barrel with a salt-bridge cluster
分子名称: CHLORIDE ION, DeNovoTIM13-SB, PHOSPHATE ION
著者Kordes, S, Romero-Romero, S, Hocker, B.
登録日2021-07-01
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
Protein Sci., 31, 2022
7OSV
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BU of 7osv by Molmil
DeNovoTIM6-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 1)
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, DeNovoTIM6-SB, ...
著者Kordes, S, Romero-Romero, S, Hocker, B.
登録日2021-06-09
公開日2021-12-15
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
Protein Sci., 31, 2022
5EZ8
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BU of 5ez8 by Molmil
A de novo designed heptameric coiled coil CC-Hept-I-C-I
分子名称: CC-Hept-I-C-I
著者Burton, A.J, Brady, R.L, Woolfson, D.N.
登録日2015-11-26
公開日2016-07-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Installing hydrolytic activity into a completely de novo protein framework.
Nat.Chem., 8, 2016
5EZE
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BU of 5eze by Molmil
A de novo designed heptameric coiled coil CC-Hept-I18betaMeCys-L22H-I25E
分子名称: CC-Hept-bMeCys-His-Glu, GLYCEROL
著者Burton, A.J, Brady, R.L, Woolfson, D.N.
登録日2015-11-26
公開日2016-07-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Installing hydrolytic activity into a completely de novo protein framework.
Nat.Chem., 8, 2016
5EZ9
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BU of 5ez9 by Molmil
A de novo designed heptameric coiled coil CC-Hept-I-H-I
分子名称: CC-Hept-L22H, HEXANE-1,6-DIOL
著者Burton, A.J, Brady, R.L, Woolfson, D.N.
登録日2015-11-26
公開日2016-07-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Installing hydrolytic activity into a completely de novo protein framework.
Nat.Chem., 8, 2016
5F2Y
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BU of 5f2y by Molmil
A de novo designed heptameric coiled coil CC-Hept-homoCys-H-E
分子名称: CC-Hept-hCys-H-E
著者Burton, A.J, Brady, R.L, Woolfson, D.N.
登録日2015-12-02
公開日2016-07-06
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Installing hydrolytic activity into a completely de novo protein framework.
Nat.Chem., 8, 2016
5EZA
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BU of 5eza by Molmil
A de novo designed heptameric coiled coil CC-Hept-I18C-L22H
分子名称: CC-Hept-C-H-I, GLYCEROL
著者Burton, A.J, Brady, R.L, Woolfson, D.N.
登録日2015-11-26
公開日2016-07-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Installing hydrolytic activity into a completely de novo protein framework.
Nat.Chem., 8, 2016
5EZC
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BU of 5ezc by Molmil
A de novo designed heptameric coiled coil CC-Hept-I18C-L22H-I25E
分子名称: CC-Hept-C-H-E
著者Burton, A.J, Brady, R.L, Woolfson, D.N.
登録日2015-11-26
公開日2016-07-06
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Installing hydrolytic activity into a completely de novo protein framework.
Nat.Chem., 8, 2016
5JI4
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BU of 5ji4 by Molmil
Solution structure of the de novo mini protein gEEHE_02
分子名称: W37
著者Buchko, G.W, Bahl, C.D, Pulavarti, S.V, Baker, D, Szyperski, T.
登録日2016-04-21
公開日2016-09-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Accurate de novo design of hyperstable constrained peptides.
Nature, 538, 2016
5TX8
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BU of 5tx8 by Molmil
Solution structure of the de novo mini protein gHH_44
分子名称: HH2
著者Buchko, G.W, Bahl, C.D, Baker, D.
登録日2016-11-15
公開日2017-09-27
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Cytosolic expression, solution structures, and molecular dynamics simulation of genetically encodable disulfide-rich de novo designed peptides.
Protein Sci., 27, 2018
7BIM
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BU of 7bim by Molmil
A de novo designed nonameric coiled coil, CC-Type2-(GgLaId)4
分子名称: GLYCEROL, ISOPROPYL ALCOHOL, Nonameric de novo coiled coil CC-Type2-(GgLaId)4
著者Shelley, K.L, Rhys, G.G, Dawson, W.M, Brady, R.L, Woolfson, D.N.
登録日2021-01-12
公開日2021-04-21
最終更新日2021-11-17
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Coiled coils 9-to-5: rational de novo design of alpha-helical barrels with tunable oligomeric states.
Chem Sci, 12, 2021
6W70
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BU of 6w70 by Molmil
Crystal Structure of apixaban-bound ABLE
分子名称: 1-(4-METHOXYPHENYL)-7-OXO-6-[4-(2-OXOPIPERIDIN-1-YL)PHENYL]-4,5,6,7-TETRAHYDRO-1H-PYRAZOLO[3,4-C]PYRIDINE-3-CARBOXAMIDE, ACETATE ION, De novo designed ABLE, ...
著者Polizzi, N.F.
登録日2020-03-18
公開日2020-08-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.296 Å)
主引用文献A defined structural unit enables de novo design of small-molecule-binding proteins.
Science, 369, 2020
6W6X
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BU of 6w6x by Molmil
Crystal Structure of ABLE Apo-protein
分子名称: ACETATE ION, De novo designed ABLE protein, SULFATE ION
著者Polizzi, N.F.
登録日2020-03-18
公開日2020-08-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.297 Å)
主引用文献A defined structural unit enables de novo design of small-molecule-binding proteins.
Science, 369, 2020
5EON
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BU of 5eon by Molmil
Crystal structure of a de novo antiparallel coiled-coil hexamer - ACC-Hex
分子名称: ACC-Hex
著者Spencer, R.K, Hochbaum, A.I.
登録日2015-11-10
公開日2016-05-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.696 Å)
主引用文献X-ray Crystallographic Structure and Solution Behavior of an Antiparallel Coiled-Coil Hexamer Formed by de Novo Peptides.
Biochemistry, 55, 2016
5JHI
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BU of 5jhi by Molmil
Solution structure of the de novo mini protein gEHE_06
分子名称: W35
著者Buchko, G.W, Bahl, C.D, Gilmore, J.M, Pulavarti, S.V, Baker, D, Szyperski, T.
登録日2016-04-21
公開日2016-09-28
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Accurate de novo design of hyperstable constrained peptides.
Nature, 538, 2016
7NFK
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BU of 7nfk by Molmil
An octameric barrel state of a de novo coiled-coil assembly: CC-Type2-(LaId)4-I24S.
分子名称: CC-Type2-(LaId)4-I24S, ISOPROPYL ALCOHOL
著者Rhys, G.G, Dawson, W.M, Brady, R.L, Woolfson, D.N.
登録日2021-02-07
公開日2022-03-02
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Differential sensing with arrays of de novo designed peptide assemblies.
Nat Commun, 14, 2023
7NFH
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BU of 7nfh by Molmil
A heptameric barrel state of a de novo coiled-coil assembly: CC-Type2-(MaId)4.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CC-Type2-(MaId)4
著者Rhys, G.G, Dawson, W.M, Brady, R.L, Woolfson, D.N.
登録日2021-02-07
公開日2022-03-02
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Differential sensing with arrays of de novo designed peptide assemblies.
Nat Commun, 14, 2023
7NFL
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BU of 7nfl by Molmil
An octameric barrel state of a de novo coiled-coil assembly: CC-Type2-(LaId)4-I24N.
分子名称: CC-Type2-(LaId)4-I24N
著者Rhys, G.G, Dawson, W.M, Brady, R.L, Woolfson, D.N.
登録日2021-02-07
公開日2022-03-02
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.44 Å)
主引用文献Differential sensing with arrays of de novo designed peptide assemblies.
Nat Commun, 14, 2023

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