PDB: 41522 件ウェブページステータス検索Chemie searchBIRD

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6JCR	AAV1 in neutral condition at 3.07 Ang 分子名称: Capsid protein 著者 Lou, Z, Zhang, R. 登録日 2019-01-30 公開日 2019-10-23 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Divergent engagements between adeno-associated viruses with their cellular receptor AAVR. Nat Commun, 10, 2019
6SD4	Structure of the RBM3/collar region of the Salmonella flagella MS-ring protein FliF with 34-fold symmetry applied 分子名称: Flagellar M-ring protein 著者 Johnson, S, Fong, Y.H, Deme, J.C, Furlong, E.J, Kuhlen, L, Lea, S.M. 登録日 2019-07-26 公開日 2020-03-18 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Symmetry mismatch in the MS-ring of the bacterial flagellar rotor explains the structural coordination of secretion and rotation. Nat Microbiol, 5, 2020
1WZI	Structural basis for alteration of cofactor specificity of Malate dehydrogenase from Thermus flavus 分子名称: Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 著者 Tomita, T, Fushinobu, S, Kuzuyama, T, Nishiyama, M. 登録日 2005-03-05 公開日 2006-03-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for alteration of cofactor specificity of malate dehydrogenase from Thermus flavus to be published
7C1Z	ATP bound structure of Pseudouridine kinase (PUKI) from Arabidopsis thaliana 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PfkB-like carbohydrate kinase family protein, ... 著者 Kim, S.H, Rhee, S. 登録日 2020-05-06 公開日 2020-11-18 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.09617043 Å) 主引用文献 Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana. Nucleic Acids Res., 49, 2021
8R3C	Cocrystal form II of the Pent - sulfonato-calix[8]arene complex 分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, Beta propeller, sulfonato-calix[8]arene 著者 Flood, R.J, Crowley, P.B. 登録日 2023-11-08 公開日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Multivalent Calixarene Complexation of a Designed Pentameric Lectin. Biomacromolecules, 25, 2024
6B6B	Beta-Lactamase, unmixed needles crystal form 分子名称: Beta-lactamase 著者 Pandey, S, Schmidt, M. 登録日 2017-10-01 公開日 2018-06-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Enzyme intermediates captured "on the fly" by mix-and-inject serial crystallography. BMC Biol., 16, 2018
8G6I	Coagulation factor VIII bound to a patient-derived anti-C1 domain antibody inhibitor 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor VIII chimera from human and pig, NB33 heavy chain, ... 著者 Childers, K.C, Davulcu, O, Haynes, R.M, Lollar, P, Doering, C.B, Coxon, C.H, Spiegel, P.C. 登録日 2023-02-15 公開日 2023-05-24 最終更新日 2023-07-26 実験手法 ELECTRON MICROSCOPY (4.23 Å) 主引用文献 Structure of coagulation factor VIII bound to a patient-derived anti-C1 domain antibody inhibitor. Blood, 142, 2023
1TTI	THREE NEW CRYSTAL STRUCTURES OF POINT MUTATION VARIANTS OF MONOTIM: CONFORMATIONAL FLEXIBILITY OF LOOP-1,LOOP-4 AND LOOP-8 分子名称: 2-PHOSPHOGLYCOLIC ACID, TRIOSEPHOSPHATE ISOMERASE 著者 Radha Kishan, K.V, Wierenga, R.K. 登録日 1995-04-19 公開日 1995-10-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Three new crystal structures of point mutation variants of monoTIM: conformational flexibility of loop-1, loop-4 and loop-8. Structure, 3, 1995
6MS4	Crystal structure of the DENR-MCT-1 complex 分子名称: Density-regulated protein, GLYCEROL, Malignant T-cell-amplified sequence 1, ... 著者 Lomakin, I.B, Steitz, T.A, Dmitriev, S.E. 登録日 2018-10-16 公開日 2019-01-02 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Crystal structure of the DENR-MCT-1 complex revealed zinc-binding site essential for heterodimer formation. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
7BTL	Mevo lectin complex with mannopentose 分子名称: GLYCEROL, alpha-D-mannopyranose, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose, ... 著者 Sivaji, N, Suguna, K, Surolia, A, Vijayan, M. 登録日 2020-04-01 公開日 2021-02-03 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural and related studies on Mevo lectin from Methanococcus voltae A3: the first thorough characterization of an archeal lectin and its interactions. Glycobiology, 31, 2021
6J9B	Arabidopsis FUS3-DNA complex 分子名称: B3 domain-containing transcription factor FUS3, DNA (5'-D(*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*TP*C)-3'), DNA (5'-D(*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*TP*G)-3') 著者 Hu, H, Du, J. 登録日 2019-01-22 公開日 2019-05-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis. Nat.Plants, 5, 2019
7BWX	Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus. 分子名称: GLYCEROL, Ice-binding protein isoform1a, SULFATE ION 著者 Yamauchi, A, Arai, T, Kondo, H, Tsuda, S. 登録日 2020-04-16 公開日 2020-05-27 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.904 Å) 主引用文献 An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes. Biomolecules, 10, 2020
8SBH	YeiE effector binding domain from E. coli 分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ... 著者 Momany, C, Nune, M, Brondani, J.C, Afful, D, Neidle, E. 登録日 2023-04-03 公開日 2024-04-17 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 FinR, a LysR-type transcriptional regulator involved in sulfur homeostasis with homologs in diverse microorganisms To Be Published
6B9F	Human ATL1 mutant - F151S bound to GDPAlF4- 分子名称: Atlastin-1, GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, ... 著者 O'Donnell, J.P, Sondermann, H. 登録日 2017-10-10 公開日 2017-12-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A hereditary spastic paraplegia-associated atlastin variant exhibits defective allosteric coupling in the catalytic core. J. Biol. Chem., 293, 2018
7L3L	Structure of TRAF5 and TRAF6 RING Hetero dimer 分子名称: TNF receptor-associated factor 5, TNF receptor-associated factor 6, ZINC ION 著者 Das, A, Middleton, A.J, Padala, P, Day, C.L. 登録日 2020-12-17 公開日 2021-02-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The structure and ubiquitin binding properties of TRAF RING heterodimers. J.Mol.Biol., 2021
6JC0	Structural analysis of molybdopterin synthases from two mycobacteria pathogens 分子名称: Putative molybdenum cofactor biosynthesis protein, Putative molybdenum cofactor biosynthesis protein D2 (MoaD2) / thiamine S 著者 Liu, X, Wang, H.Y. 登録日 2019-01-27 公開日 2019-02-13 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural analysis of molybdopterin synthases from two mycobacterial pathogens. Biochem. Biophys. Res. Commun., 511, 2019
8G5D	Structure of ACLY-D1026A-products, local refinement of ASH domain 分子名称: (3S)-citryl-Coenzyme A, ACETYL COENZYME *A, ADENOSINE-5'-DIPHOSPHATE, ... 著者 Wei, X, Marmorstein, R. 登録日 2023-02-13 公開日 2023-05-10 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Allosteric role of the citrate synthase homology domain of ATP citrate lyase. Nat Commun, 14, 2023
5MEC	Crystal structure of yeast Cdt1 middle domain (residues 294-433) 分子名称: Cell division cycle protein CDT1 著者 Pye, V.E, Frigola, J, Diffley, J.F.X, Cherepanov, P. 登録日 2016-11-14 公開日 2017-05-17 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Cdt1 stabilizes an open MCM ring for helicase loading. Nat Commun, 8, 2017
6SW5	Crystal structure of the human S-adenosylmethionine synthetase 1 (ligand-free form) 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, S-adenosylmethionine synthase isoform type-1 著者 Panmanee, J, Antoyuk, S.V, Hasnain, S.S. 登録日 2019-09-19 公開日 2020-06-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural basis of the dominant inheritance of hypermethioninemia associated with the Arg264His mutation in the MAT1A gene. Acta Crystallogr D Struct Biol, 76, 2020
5JGP	Crystal structure of the nitrate/nitrite sensor NarQ fragment bound with iodide ions 分子名称: IODIDE ION, NITRATE ION, Nitrate/nitrite sensor protein NarQ 著者 Melnikov, I, Polovinkin, V, Popov, A, Gordeliy, V. 登録日 2016-04-20 公開日 2017-05-31 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Fast iodide-SAD phasing for high-throughput membrane protein structure determination. Sci Adv, 3, 2017
7BWY	Crystal structure of ice-binding protein from an Antarctic ascomycete, Antarctomyces psychrotrophicus. 分子名称: GLYCEROL, Ice-binding protein isoform1a 著者 Yamauchi, A, Arai, T, Kondo, H, Tsuda, S. 登録日 2020-04-16 公開日 2020-05-27 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 An Ice-Binding Protein from an Antarctic Ascomycete Is Fine-Tuned to Bind to Specific Water Molecules Located in the Ice Prism Planes. Biomolecules, 10, 2020
5MF7	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-GADD45) 分子名称: Cellular tumor antigen p53, DI(HYDROXYETHYL)ETHER, DNA, ... 著者 Rozenberg, H, Diskin-Posner, Y, Golovenko, D, Shakked, Z. 登録日 2016-11-17 公開日 2018-05-30 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
1BMD	DETERMINANTS OF PROTEIN THERMOSTABILITY OBSERVED IN THE 1.9 ANGSTROMS CRYSTAL STRUCTURE OF MALATE DEHYDROGENASE FROM THE THERMOPHILIC BACTERIUM THERMUS FLAVUS 分子名称: MALATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Kelly, C.A, Birktoft, J.J. 登録日 1992-11-10 公開日 1994-07-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Determinants of protein thermostability observed in the 1.9-A crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus. Biochemistry, 32, 1993
7KMZ	Cryo-EM structure of double ACE2-bound SARS-CoV-2 trimer Spike at pH 7.4 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... 著者 Gorman, J, Kwong, P.D, Shapiro, L. 登録日 2020-11-03 公開日 2020-12-09 最終更新日 2021-12-15 実験手法 ELECTRON MICROSCOPY (3.62 Å) 主引用文献 Cryo-EM Structures of SARS-CoV-2 Spike without and with ACE2 Reveal a pH-Dependent Switch to Mediate Endosomal Positioning of Receptor-Binding Domains. Cell Host Microbe, 28, 2020
8AXX	Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer 分子名称: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3 著者 Domanska, A, Plavec, Z, Ruokolainen, V, Loflund, B, Marjomaki, V.S, Butcher, S.J. 登録日 2022-09-01 公開日 2022-10-19 最終更新日 2023-02-01 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural Studies Reveal that Endosomal Cations Promote Formation of Infectious Coxsackievirus A9 A-Particles, Facilitating RNA and VP4 Release. J.Virol., 96, 2022

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