PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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8PKX	Kelch domain of KEAP1 in complex with a ortho-dimethylbenzene linked cyclic peptide 11 (ortho-WRCNPETaEC). 分子名称: (2-methylphenyl)methanol, 1,2-ETHANEDIOL, CHLORIDE ION, ... 著者 Braun, M.B, Bischof, L, Hartmann, M.D. 登録日 2023-06-27 公開日 2023-11-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. J.Chem.Inf.Model., 63, 2023
8PKU	Kelch domain of KEAP1 in complex with ortho-dimethylbenzene linked cyclic peptide 3 (ortho-WRCDEETGEC). 分子名称: (2-methylphenyl)methanol, 1,2-ETHANEDIOL, CHLORIDE ION, ... 著者 Braun, M.B, Bischof, L, Hartmann, M.D. 登録日 2023-06-27 公開日 2023-11-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. J.Chem.Inf.Model., 63, 2023
8PV3	Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV7	Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.12 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8Q1B	III2-IV1 respiratory supercomplex from S. pombe 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, CALCIUM ION, CARDIOLIPIN, ... 著者 Moe, A, Brzezinski, P. 登録日 2023-07-31 公開日 2023-11-15 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure and function of the S. pombe III-IV-cyt c supercomplex. Proc.Natl.Acad.Sci.USA, 120, 2023
8PKV	Kelch domain of KEAP1 in complex with a ortho-dimethylbenzene linked cyclic peptide 4 (ortho-WRCDEETGEC). 分子名称: (2-methylphenyl)methanol, 1,2-ETHANEDIOL, CHLORIDE ION, ... 著者 Braun, M.B, Bischof, L, Hartmann, M.D. 登録日 2023-06-27 公開日 2023-11-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Computational Prediction of Cyclic Peptide Structural Ensembles and Application to the Design of Keap1 Binders. J.Chem.Inf.Model., 63, 2023
8PV1	Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.56 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV4	Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV5	Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PVA	Structure of bacterial ribosome determined by cryoEM at 100 keV 分子名称: 16S rRNA, 23S rRNA, 50S ribosomal protein L14, ... 著者 McMullan, G, Naydenova, K, Mihaylov, D, Peet, M.J, Wilson, H, Yamashita, K, Dickerson, J.L, Chen, S, Cannone, G, Lee, Y, Hutchings, K.A, Gittins, O, Sobhy, M, Wells, T, El-Gomati, M.M, Dalby, J, Meffert, M, Schulze-Briese, C, Henderson, R, Russo, C.J. 登録日 2023-07-17 公開日 2023-11-29 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structure determination by cryoEM at 100 keV. Proc.Natl.Acad.Sci.USA, 120, 2023
8PV6	Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure 分子名称: 26S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. 登録日 2023-07-17 公開日 2023-11-15 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8Q40	Crystal structure of cA4 activated Can2 in complex with a cleaved DNA substrate 分子名称: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*CP*A)-3'), DUF1887 family protein, ... 著者 Jungfer, K, Sigg, A, Jinek, M. 登録日 2023-08-04 公開日 2023-11-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q41	Crystal structure of Can2 (E341A) bound to cA4 and TTTAAA ssDNA 分子名称: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*TP*AP*AP*A)-3'), DUF1887 family protein, ... 著者 Jungfer, K, Sigg, A, Jinek, M. 登録日 2023-08-04 公開日 2023-11-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q42	Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNA 分子名称: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*AP*AP*AP*A)-3'), DUF1887 family protein, ... 著者 Jungfer, K, Sigg, A, Jinek, M. 登録日 2023-08-04 公開日 2023-11-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8PJ4	Structure of human 48S translation initiation complex after eIF5 release (48S-4) 分子名称: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Petrychenko, V, Yi, S.-H, Liedtke, D, Peng, B.Z, Rodnina, M.V, Fischer, N. 登録日 2023-06-22 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining Nat.Struct.Mol.Biol., 2024
8PWD	Crystal structure of VDR in complex Des-C-Ring and Aromatic-D-Ring analog 3c 分子名称: (1R,3S,5Z)-4-methylidene-5-[(E)-3-[3-[7,7,7-tris(fluoranyl)-6-oxidanyl-6-(trifluoromethyl)hept-3-ynyl]phenyl]pent-2-enylidene]cyclohexane-1,3-diol, Nuclear receptor coactivator 2, Vitamin D3 receptor A 著者 Rochel, N. 登録日 2023-07-20 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Novel Des-C-Ring and Aromatic-D-Ring analogs Acting as Potent Agonists of the Vitamin D Receptor (VDR) To Be Published
8Q4F	Structure of arbekacin bound Escherichia coli 70S ribosome 分子名称: 16S rRNA, 23S rRNA, 50S ribosomal protein L16, ... 著者 Majumdar, S, Parajuli, N.P, Ge, X, Emmerich, A, Sanyal, S. 登録日 2023-08-06 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of arbekacin bound Escherichia coli 70S ribosome To be published
5JBE	4,6-alpha-glucanotransferase GTFB from Lactobacillus reuteri 121 complexed with an isomalto-maltopentasaccharide 分子名称: ACETATE ION, CALCIUM ION, Inactive glucansucrase, ... 著者 Pijning, T, Dijkstra, B.W, Bai, Y, Gangoiti-Munecas, J, Dijkhuizen, L. 登録日 2016-04-13 公開日 2017-01-18 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of 4,6-alpha-Glucanotransferase Supports Diet-Driven Evolution of GH70 Enzymes from alpha-Amylases in Oral Bacteria. Structure, 25, 2017
8Q26	HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide 分子名称: CHLORIDE ION, COENZYME A, Glycylpeptide N-tetradecanoyltransferase 1, ... 著者 Dian, C, Giglione, C, Meinnel, T. 登録日 2023-08-01 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 HsNMT1 in complex with both MyrCoA and GNCFSKPR inhibitor peptide to be published
8Q2N	Cas1-Cas2 CRISPR integrase bound to prespacer and target DNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system 分子名称: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, Integration target, ... 著者 Sasnauskas, G, Gaizauskaite, U, Tamulaitiene, G. 登録日 2023-08-02 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Structural basis for spacer acquisition in a type II-A CRISPR-Cas system To be published
8Q3D	HsNMT1 in complex with both MyrCoA and GNCFSKPR(NH2) inhibitor peptide 分子名称: CHLORIDE ION, COENZYME A, GLYCEROL, ... 著者 Dian, C, Giglione, C, Meinnel, T. 登録日 2023-08-04 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 HsNMT1 in complex with both MyrCoA and GNCFSKPR(NH2) inhibitor peptide to be published
8Q05	Chlorella sorokiniana Rubisco with CsLinker (alpha3-alpha4) bound: D4 symmetry expanded 分子名称: CsLinker (alpha3-alpha4), Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit, ... 著者 Barrett, J, Blaza, J.N, Mackinder, L.C.M. 登録日 2023-07-27 公開日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.77 Å) 主引用文献 A promiscuous mechanism to phase separate eukaryotic carbon fixation To Be Published
8Q1L	NMR structure of arthrofactin A in micellar DPC solution 分子名称: arthrofactin A 著者 Kovacs, B, Geudens, N, Martins, J.C. 登録日 2023-07-31 公開日 2024-08-14 実験手法 SOLUTION NMR 主引用文献 NMR structure of the cyclic lipodepsipeptide arthrofactin A in micellar DPC solution To be published
8Q3S	HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide 分子名称: CHLORIDE ION, COENZYME A, GLY-ASN-CYS-PHE-SER-LYS-ALA-ARG, ... 著者 Dian, C, Giglione, C, Meinnel, T. 登録日 2023-08-04 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 HsNMT1 in complex with both MyrCoA and GNCFSKAR inhibitor peptide to be published
8PK7	Helical reconstruction of CHIKV nsP3 helical scaffolds 分子名称: Non-structural protein 3, ZINC ION 著者 Reguera, J, Hons, M, Zimberger, C, Ptchelkine, D, Jones, R, Desfosses, A. 登録日 2023-06-25 公開日 2024-08-14 実験手法 ELECTRON MICROSCOPY (2.52 Å) 主引用文献 The alphavirus nsP3 protein forms helical tubular scaffolds important for viral replication and particle assembly To Be Published

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