PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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8P0N	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex shallow conformation 分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... 著者 Grimm, C, Jungwirth, S, Fischer, U. 登録日 2023-05-10 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
4WRF	Crystal Structure of Surfactant Protein-A DEDN Mutant (E171D/P175E/R197N/K203D) Complexed with Mannose 分子名称: CALCIUM ION, CHLORIDE ION, HEXANE-1,6-DIOL, ... 著者 Rynkiewicz, M.J, Wu, H, Cafarella, T.R, Nikolaidis, N.M, Head, J.F, Seaton, B.A, McCormack, F.X. 登録日 2014-10-23 公開日 2016-02-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 Differential ligand binding specificities of the pulmonary collectins are determined by the conformational freedom of a surface loop To be published
8P1Y	Arabidopsis thaliana mutated variant C244S of seryl-tRNA synthetase 分子名称: Serine--tRNA ligase, cytoplasmic 著者 Kekez, I, Soic, R, Rokov-Plavec, J, Matkovic-Calogovic, D. 登録日 2023-05-13 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Arabidopsis thaliana mutated variant C244S of seryl-tRNA synthetase To Be Published
1BA8	THROMBIN INHIBITOR WITH A RIGID TRIPEPTIDYL ALDEHYDES 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, HIRUGEN, THROMBIN, ... 著者 Krishnan, R, Zhang, E, Hakansson, K, Arni, R.K, Tulinsky, A, Lim-Wilby, M.S.L, Levy, O.E, Semple, J.E, Brunck, T.K. 登録日 1998-04-23 公開日 1999-04-27 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Highly selective mechanism-based thrombin inhibitors: structures of thrombin and trypsin inhibited with rigid peptidyl aldehydes. Biochemistry, 37, 1998
8P1M	Structure of hantaan orthohantavirus (HTNV) polymerase bound to 5'vRNA and NTP Mg 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(P*AP*GP*UP*AP*G)-3'), ... 著者 Keown, J.R, Carrique, L, Grimes, J.M. 登録日 2023-05-12 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.23 Å) 主引用文献 Structure of hantaan orthohantavirus (HTNV) polymerase bound to 5'vRNA and NTP Mg To Be Published
4WMW	The structure of MBP-MCL1 bound to ligand 5 at 1.9A 分子名称: 1,2-ETHANEDIOL, 2-hydroxy-5-(methylsulfanyl)benzoic acid, FORMIC ACID, ... 著者 Clifton, M.C, Dranow, D.M. 登録日 2014-10-09 公開日 2015-05-06 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A Maltose-Binding Protein Fusion Construct Yields a Robust Crystallography Platform for MCL1. Plos One, 10, 2015
8OW6	PERIDININ-CHLOROPHYLL-PROTEIN OF HETEROCAPSA PYGMAEA, 100K 分子名称: CHLORIDE ION, CHLOROPHYLL A, PERIDININ, ... 著者 Hofmann, E, Schulte, T. 登録日 2023-04-27 公開日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Structural and Spectroscopic Characterization of the Peridinin-Chlorophyll a-Protein (PCP) Complex from Heterocapsa pygmaea (HPPCP) To Be Published
8PBO	Deep interactome learning for generative drug design 分子名称: 3-[2-fluoranyl-4-[3-[2-fluoranyl-4-(5-methyl-1,3,4-thiadiazol-2-yl)phenoxy]propoxy]phenyl]propanoic acid, GLYCEROL, Peroxisome proliferator-activated receptor gamma, ... 著者 Hakansson, M, Focht, D, Atz, K, Schneider, G. 登録日 2023-06-09 公開日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Prospective de novo drug design with deep interactome learning. Nat Commun, 15, 2024
8P17	E167K RF2 on E. coli 70S release complex with UGG (Structure II) 分子名称: 1,4-DIAMINOBUTANE, 16S RNA, 23S rRNA, ... 著者 Pundir, S, Larsson, D.S.D, Selmer, M, Sanyal, S. 登録日 2023-05-11 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.78 Å) 主引用文献 The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria To Be Published
8P1Z	Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT) 分子名称: Serine--tRNA ligase, cytoplasmic 著者 Kekez, I, Soic, R, Rokov-Plavec, J, Matkovic-Calogovic, D. 登録日 2023-05-13 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Arabidopsis thaliana cytosolic seryl-tRNA synthetase in addition of dithiothreitol (DTT) To Be Published
8P5E	S. cerevisiae nexus-sCMGE after DNA replication initiation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Henrikus, S.S, Willhoft, O. 登録日 2023-05-24 公開日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 2024
5IQZ	Crystal structure of N-terminal domain of Human SIRT7 分子名称: SIRT7 protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose 著者 Thakur, K.G, Priyanka, A. 登録日 2016-03-11 公開日 2016-07-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.334 Å) 主引用文献 Crystal structure of the N-terminal domain of human SIRT7 reveals a three-helical domain architecture Proteins, 84, 2016
8P63	S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Henrikus, S.S, Willhoft, O. 登録日 2023-05-25 公開日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 2024
8OVT	Crystal structure of the ligand-free YeGT glycosyltransferase 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, YeGT glycosyltransferase 著者 Wirth, C, Hunte, C. 登録日 2023-04-26 公開日 2024-05-15 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Tyrosine-modifying glycosylation by Yersinia effectors. J.Biol.Chem., 300, 2024
8P62	S. cerevisiae ssDNA-sCMGE after DNA replication initiation 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Henrikus, S.S, Willhoft, O. 登録日 2023-05-25 公開日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Unwinding of a eukaryotic origin of replication visualized by cryo-EM. Nat.Struct.Mol.Biol., 2024
8P2E	Homotypic interacting B1 fab bound to Chondroitin Sulfate A 分子名称: B1 fab heavy, B1 fab light 著者 Raghavan, S.S.R, Dagil, R, Wang, K.T, Salanti, A. 登録日 2023-05-16 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of homotypic B1 fabs bound to Chondroiting Sulfate A To Be Published
8P5M	SARS-CoV-2 Spike RBD in complex with Mab-23 (Fab) 分子名称: Mab-23 (Heavy chain variable domain), Mab-23 (Light chain variable domain), Spike protein S1 著者 Das, H, Hallberg, B.M. 登録日 2023-05-24 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 SARS-CoV-2 Spike RBD in complex with Mab-23 (Fab domains) To Be Published
8OLW	Structure of Oceanobacillus iheyensis group II intron before the first step of splicing in the presence of K+, Ca2+ and intronistat B 分子名称: CALCIUM ION, Group IIC intron, POTASSIUM ION 著者 Silvestri, I, Marcia, M. 登録日 2023-03-30 公開日 2024-06-19 最終更新日 2024-07-03 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Targeting the conserved active site of splicing machines with specific and selective small molecule modulators. Nat Commun, 15, 2024
4X0C	Crystal structure of P domain from norovirus strain NSW0514 in complex with HBGA type Lex (triglycan) 分子名称: 1,2-ETHANEDIOL, FORMIC ACID, VP1, ... 著者 Singh, B.K, Hansman, G.S. 登録日 2014-11-21 公開日 2014-12-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Human noroviruses' fondness for histo-blood group antigens. J.Virol., 89, 2015
4X1H	Opsin/G(alpha) peptide complex stabilized by nonyl-glucoside 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, C-terminal derived peptide of guanine nucleotide-binding protein G(t) subunit alpha-1, PALMITIC ACID, ... 著者 Blankenship, E, Lodowski, D.T. 登録日 2014-11-24 公開日 2015-11-04 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 The High-Resolution Structure of Activated Opsin Reveals a Conserved Solvent Network in the Transmembrane Region Essential for Activation. Structure, 23, 2015
7B3O	Crystal structure of the SARS-CoV-2 RBD in complex with STE90-C11 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy Chain of Fab Fragment, Light Chain of Fab Fragment, ... 著者 Kluenemann, T, Van den Heuvel, J. 登録日 2020-12-01 公開日 2020-12-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A SARS-CoV-2 neutralizing antibody selected from COVID-19 patients binds to the ACE2-RBD interface and is tolerant to most known RBD mutations. Cell Rep, 36, 2021
8OLV	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850 分子名称: 2-[2,6-bis(bromanyl)-3,4,5-tris(oxidanyl)phenyl]carbonyl-~{N}-(2-pyrrolidin-1-ylethyl)-1-benzofuran-5-carboxamide, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, ... 著者 Silvestri, I, Marcia, M. 登録日 2023-03-30 公開日 2024-06-19 最終更新日 2024-07-03 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 Targeting the conserved active site of splicing machines with specific and selective small molecule modulators. Nat Commun, 15, 2024
8P43	Structure of the MHC class Ib molecule Qa-1b in complex with Q001 peptide 分子名称: Beta-2-microglobulin, H-2 class I histocompatibility antigen, Qa-1b, ... 著者 Sala, B.M, Achour, A. 登録日 2023-05-19 公開日 2024-06-12 実験手法 X-RAY DIFFRACTION (2.43 Å) 主引用文献 MHC-E is a convergent checkpoint ligand for LILRB1 on macrophages and during inflammation for NKG2A on lymphocytes To Be Published
8P2U	Crystal structure of S6BE with Silicotungstic Acid (STA) polyoxometalate 分子名称: Keggin (STA), S6BE 著者 Wouters, S.M.L, Kamata, K, Vandebroek, L. 登録日 2023-05-16 公開日 2024-06-12 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Crystal structure of S6BE with Silicotungstic Acid (STA) polyoxometalate To be published
6Y6P	Structure of Hantaan virus envelope glycoprotein Gn 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope polyprotein 著者 Serris, A, Rey, F.A, Guardado-Calvo, P. 登録日 2020-02-27 公開日 2020-10-14 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.938 Å) 主引用文献 The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism. Cell, 183, 2020

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