PDB: 55698 件ウェブページステータス検索Chemie searchBIRD

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8TL7	CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage 分子名称: Computationally designed protein 著者 Weidle, C, Borst, A.J. 登録日 2023-07-26 公開日 2024-03-13 最終更新日 2024-04-10 実験手法 ELECTRON MICROSCOPY (4.05 Å) 主引用文献 Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024
8TYN	Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state (tetramer model) 分子名称: Dynamin-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION 著者 Jimah, J.R, Canagarajah, B.J, Hinshaw, J.E. 登録日 2023-08-25 公開日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.26 Å) 主引用文献 Cryo-EM structures of membrane-bound dynamin in a post-hydrolysis state primed for membrane fission. Dev.Cell, 2024
8WKL	Rauvolfia serpentina strictosidine synthase (RsSTR) in complex with a non-reactive tryptamine substitute crystallized in P1211 space group 分子名称: 2-(2-methyl-1H-indol-3-yl)ethanamine, DI(HYDROXYETHYL)ETHER, Strictosidine synthase 著者 Nitin, K, Rajakumara, E. 登録日 2023-09-28 公開日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 Proxy-approach in understanding the bisubstrate activity of strictosidine synthases. Int.J.Biol.Macromol., 262, 2024
8TJY	Structure of Gabija AB complex 分子名称: Endonuclease GajA, Gabija protein GajB 著者 Shen, Z.F, Yang, X.Y, Fu, T.M. 登録日 2023-07-24 公開日 2024-04-24 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 Molecular basis of Gabija anti-phage supramolecular assemblies. Nat.Struct.Mol.Biol., 2024
1WDL	fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form II (native4) 分子名称: 3,6,9,12,15-PENTAOXATRICOSAN-1-OL, 3-ketoacyl-CoA thiolase, ACETYL COENZYME *A, ... 著者 Ishikawa, M, Tsuchiya, D, Oyama, T, Tsunaka, Y, Morikawa, K. 登録日 2004-05-17 公開日 2004-07-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex Embo J., 23, 2004
8U4T	Structure of tetrameric CXCR4 in complex with REGN7663 Fab 分子名称: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate, C-X-C chemokine receptor type 4, CHOLESTEROL, ... 著者 Saotome, K, McGoldrick, L.L, Franklin, M.C. 登録日 2023-09-11 公開日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.38 Å) 主引用文献 Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024
9AXC	Activated CRAF/MEK heterotetramer from focused refinement of CRAF/MEK/14-3-3 complex 分子名称: Dual specificity mitogen-activated protein kinase kinase 1, GST26/CRAF chimera, N-[3-fluoro-4-({7-[(3-fluoropyridin-2-yl)oxy]-4-methyl-2-oxo-2H-1-benzopyran-3-yl}methyl)pyridin-2-yl]-N'-methylsulfuric diamide 著者 Quade, B, Cohen, S.E, Huang, X. 登録日 2024-03-06 公開日 2024-04-17 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.16 Å) 主引用文献 The Pan-RAF-MEK Nondegrading Molecular Glue NST-628 Is a Potent and Brain-Penetrant Inhibitor of the RAS-MAPK Pathway with Activity across Diverse RAS- and RAF-Driven Cancers. Cancer Discov, 14, 2024
8UMC	Deinococcus aerius TR0125 C-glucosyl deglycosidase (CGD), cryo-EM 分子名称: DUF6379 domain-containing protein, MANGANESE (II) ION, Xylose isomerase-like TIM barrel domain-containing protein 著者 Furlanetto, V, Kalyani, D.C, Kostelac, A, Haltrich, D, Hallberg, B.M, Divne, C. 登録日 2023-10-17 公開日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structural and Functional Characterization of a Gene Cluster Responsible for Deglycosylation of C-glucosyl Flavonoids and Xanthonoids by Deinococcus aerius. J.Mol.Biol., 436, 2024
8XC6	Crystal structure of large stokes shift red fluorescent protein tKeima 分子名称: fluorescent protein 著者 Nam, K.H. 登録日 2023-12-08 公開日 2024-04-17 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Analysis of the Large Stokes Shift Red Fluorescent Protein tKeima. Molecules, 29, 2024
8XFQ	Structure of the alginate epimerase/lyase complexed with penta-mannuronic acid 分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL, ... 著者 Fujiwara, T. 登録日 2023-12-14 公開日 2024-05-15 最終更新日 2024-06-26 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural basis for the minimal bifunctional alginate epimerase AlgE3 from Azotobacter chroococcum. Febs Lett., 598, 2024
8WTQ	HUMAN SQUALENE SYNTHASE IN COMPLEX WITH {1-[2-Chloro-5-(2,2-dimethyl-propyl)-13-(2-methoxy-phenyl)-6-oxo-6,7,10,11-tetrahydro-5H,9H,13H-12-oxa-5,8-diaza-benzocycloundecene-8-carbonyl]-piperidin-4-yl}-acetic acid 分子名称: 2-[1-[[(10~{S})-13-chloranyl-2-(2,2-dimethylpropyl)-10-(2-methoxyphenyl)-3-oxidanylidene-9-oxa-2,5-diazabicyclo[9.4.0]pentadeca-1(15),11,13-trien-5-yl]carbonyl]piperidin-4-yl]ethanoic acid, PHOSPHATE ION, Squalene synthase 著者 Suzuki, M, Haginoya, N, Suzuki, M, Ishigai, Y, Terayama, K, Kanda, A, Sugita, K. 登録日 2023-10-19 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Discovery of Novel 11-Membered Templates as Squalene Synthase Inhibitors. J.Med.Chem., 67, 2024
8VC2	CryoEM structure of insect gustatory receptor BmGr9 in the presence of fructose 分子名称: (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, Gustatory receptor 著者 Frank, H.M, Walsh Jr, R.M, Garrity, P.A, Gaudet, R. 登録日 2023-12-13 公開日 2024-01-10 最終更新日 2024-01-24 実験手法 ELECTRON MICROSCOPY (3.98 Å) 主引用文献 Structure of an insect gustatory receptor. Biorxiv, 2023
9B5E	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from consensus 分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.81 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
8VC1	CryoEM structure of insect gustatory receptor BmGr9 分子名称: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, ... 著者 Frank, H.M, Walsh Jr, R.M, Garrity, P.A, Gaudet, R. 登録日 2023-12-13 公開日 2024-01-10 最終更新日 2024-01-24 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Structure of an insect gustatory receptor. Biorxiv, 2023
9B5G	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 2 map and model (Ub(A)/ATP/Mg) 分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.67 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9B5L	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (Ub(A)-AMP) 分子名称: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Polyubiquitin, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9FBY	N-TERMINAL BROMODOMAIN OF HUMAN BRD4 with (5-(4-chloro-1-((tetrahydro-2H-pyran-4-yl)methyl)-1H-imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one 分子名称: 1,2-ETHANEDIOL, 5-[4-chloranyl-1-(oxan-4-ylmethyl)imidazol-2-yl]-1,3-dimethyl-pyridin-2-one, Bromodomain-containing protein 4 著者 Chung, C. 登録日 2024-05-14 公開日 2024-06-26 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.853 Å) 主引用文献 Structure- and Property-Based Optimization of Efficient Pan-Bromodomain and Extra Terminal Inhibitors to Identify Oral and Intravenous Candidate I-BET787. J.Med.Chem., 67, 2024
9B5D	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from consensus 分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9B5H	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 3 map and model (Ub(A)-AMP/PPi/Mg) 分子名称: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Large ribosomal subunit protein eL40B, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9B5I	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 4 map and model (Ub(A)-AMP/PPi/Mg) 分子名称: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9B5F	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 1 map and model (Ub(A)/ATP/Mg) 分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (2.78 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
9BCB	Crystal structure of human cellular retinol binding protein 3 in complex with C11 TopFluor MG 分子名称: 1-[11-(dipyrrometheneboron difluoride)undecanoyl]-rac-glycerol, GLYCEROL, Retinol-binding protein 5 著者 Golczak, M. 登録日 2024-04-08 公開日 2024-04-17 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Interactom of cellular retinol binding protein 3. To Be Published
8XYB	hPhK gamma-delta subcomplex in inactive state 分子名称: Calmodulin-1, FARNESYL, Phosphorylase b kinase gamma catalytic chain, ... 著者 Yang, X.K, Xiao, J.Y. 登録日 2024-01-19 公開日 2024-04-03 最終更新日 2024-04-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Architecture and activation of human muscle phosphorylase kinase. Nat Commun, 15, 2024
9B5K	Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (Ub(A)/ATP/Mg) 分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ... 著者 Kochanczyk, T, Lima, C.D. 登録日 2024-03-22 公開日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.16 Å) 主引用文献 Structural basis for transthiolation intermediates in the ubiquitin pathway To be published
8TK1	Structure of Gabija AB complex 1 分子名称: Endonuclease GajA, Gabija protein GajB 著者 Shen, Z.F, Yang, X.Y, Fu, T.M. 登録日 2023-07-25 公開日 2024-04-24 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Molecular basis of Gabija anti-phage supramolecular assemblies. Nat.Struct.Mol.Biol., 2024

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