Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7CFS
DownloadVisualize
BU of 7cfs by Molmil
Cryo-EM strucutre of human acid-sensing ion channel 1a at pH 8.0
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acid-sensing ion channel 1, CHOLESTEROL HEMISUCCINATE, ...
著者Sun, D.M, Liu, S.L, Li, S.Y, Yang, F, Tian, C.L.
登録日2020-06-28
公開日2020-10-21
実験手法ELECTRON MICROSCOPY (3.56 Å)
主引用文献Structural insights into human acid-sensing ion channel 1a inhibition by snake toxin mambalgin1.
Elife, 9, 2020
7CGY
DownloadVisualize
BU of 7cgy by Molmil
Human DMC1 Q244M mutant of the post-synaptic complexes
分子名称: CALCIUM ION, Meiotic recombination protein DMC1/LIM15 homolog, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Chi, H.Y, Ho, M.C, Tsai, M.D, Luo, S.C, Yeh, H.Y.
登録日2020-07-03
公開日2020-11-18
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Identification of fidelity-governing factors in human recombinases DMC1 and RAD51 from cryo-EM structures.
Nat Commun, 12, 2021
7C7N
DownloadVisualize
BU of 7c7n by Molmil
Crystal structure of E.coli DNA gyrase B in complex with 6-fluoro-8-(methylamino)-2-oxo-1,2-dihydroquinoline derivative
分子名称: 4-[[6-fluoranyl-8-(methylamino)-2-oxidanylidene-1~{H}-quinolin-3-yl]carbonylamino]benzoic acid, DNA gyrase subunit B
著者Mima, M, Ushiyama, F.
登録日2020-05-26
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Lead optimization of 8-(methylamino)-2-oxo-1,2-dihydroquinolines as bacterial type II topoisomerase inhibitors.
Bioorg.Med.Chem., 28, 2020
7CID
DownloadVisualize
BU of 7cid by Molmil
Crystal structure of P.aeruginosa LpxC in complex with inhibitor
分子名称: 1-[3-(4-chlorophenyl)propyl]imidazole, DIMETHYL SULFOXIDE, UDP-3-O-acyl-N-acetylglucosamine deacetylase, ...
著者Baker, L.M, Mima, M, Surgenor, A, Robertson, A.
登録日2020-07-07
公開日2020-12-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity.
J.Med.Chem., 63, 2020
7CM8
DownloadVisualize
BU of 7cm8 by Molmil
High resolution crystal structure of M92A mutant of O-acetyl-L-serine sulfhydrylase from Haemophilus influenzae
分子名称: Cysteine synthase, GLYCEROL, SODIUM ION
著者Kaushik, A, Rahisuddin, R, Saini, N, Kumaran, S.
登録日2020-07-25
公開日2020-08-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular mechanism of selective substrate engagement and inhibitor disengagement of cysteine synthase.
J.Biol.Chem., 296, 2020
7C9X
DownloadVisualize
BU of 7c9x by Molmil
Echovirus 3 F-particle
分子名称: MYRISTIC ACID, SPHINGOSINE, VP1, ...
著者Wang, K, Rao, Z, Wang, X.
登録日2020-06-08
公開日2020-08-12
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structures of Echovirus 30 in complex with its receptors inform a rational prediction for enterovirus receptor usage.
Nat Commun, 11, 2020
7CPK
DownloadVisualize
BU of 7cpk by Molmil
Xylanase R from Bacillus sp. TAR-1
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Endo-1,4-beta-xylanase A, ...
著者Kuwata, K, Suzuki, M, Takita, T, Nakatani, K, Li, T, Katano, Y, Kojima, K, Mizutani, K, Mikami, B, Yatsunami, R, Nakamura, S, Yasukawa, K.
登録日2020-08-07
公開日2020-09-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Insight into the mechanism of thermostabilization of GH10 xylanase from Bacillus sp. strain TAR-1 by the mutation of S92 to E.
Biosci.Biotechnol.Biochem., 85, 2021
7CRJ
DownloadVisualize
BU of 7crj by Molmil
Dark State Structure of Chloride ion pumping rhodopsin (ClR) with NTQ motif
分子名称: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
著者Yun, J.H, Liu, H, Lee, W.T, Schmidt, M.
登録日2020-08-13
公開日2020-09-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Early-stage dynamics of chloride ion-pumping rhodopsin revealed by a femtosecond X-ray laser.
Proc.Natl.Acad.Sci.USA, 118, 2021
7CJ3
DownloadVisualize
BU of 7cj3 by Molmil
Crystal structure of the transmembrane domain of Salpingoeca rosetta rhodopsin phosphodiesterase
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Phosphodiesterase, RETINAL
著者Ikuta, T, Shihoya, W, Yamashita, K, Nureki, O.
登録日2020-07-09
公開日2020-11-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural insights into the mechanism of rhodopsin phosphodiesterase.
Nat Commun, 11, 2020
7CN7
DownloadVisualize
BU of 7cn7 by Molmil
T4 phage spackle protein gp61.3 complex with lysozyme domain of gp5 tail lysozyme
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Baseplate central spike complex protein gp5, ...
著者Kanamaru, S, Leiman, P.G.
登録日2020-07-30
公開日2020-10-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structure and Function of the T4 Spackle Protein Gp61.3.
Viruses, 12, 2020
7COF
DownloadVisualize
BU of 7cof by Molmil
Cholesterol esterase from Burkholderia stabilis (orthorhombic crystal form)
分子名称: Alpha/beta hydrolase, CALCIUM ION, GLYCEROL, ...
著者Yasutake, Y, Tamura, T.
登録日2020-08-04
公開日2020-12-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.084 Å)
主引用文献Bacterial triacylglycerol lipase is a potential cholesterol esterase: Identification of a key determinant for sterol-binding specificity.
Int.J.Biol.Macromol., 167, 2021
7C2Q
DownloadVisualize
BU of 7c2q by Molmil
The crystal structure of COVID-19 main protease in the apo state
分子名称: 3C-like proteinase
著者Zhou, X.L, Zhong, F.L, Lin, C, Hu, X.H, Zhou, H, Wang, Q.S, Li, j, Zhang, J.
登録日2020-05-08
公開日2020-09-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structure of SARS-CoV-2 main protease in the apo state.
Sci China Life Sci, 64, 2021
7C33
DownloadVisualize
BU of 7c33 by Molmil
Macro domain of SARS-CoV-2 in complex with ADP-ribose
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, Non-structural protein 3
著者Lin, M.H, Hsu, C.H.
登録日2020-05-11
公開日2020-11-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.83 Å)
主引用文献Structural, Biophysical, and Biochemical Elucidation of the SARS-CoV-2 Nonstructural Protein 3 Macro Domain.
Acs Infect Dis., 6, 2020
7C3L
DownloadVisualize
BU of 7c3l by Molmil
Structure of L-lysine oxidase D212A/D315A in complex with L-tyrosine
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, L-lysine oxidase, ...
著者Kitagawa, M, Matsumoto, Y, Inagaki, K, Imada, K.
登録日2020-05-12
公開日2020-09-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of strict substrate recognition of l-lysine alpha-oxidase from Trichoderma viride.
Protein Sci., 29, 2020
7CRC
DownloadVisualize
BU of 7crc by Molmil
Cryo-EM structure of plant NLR RPP1 tetramer in complex with ATR1
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Avirulence protein ATR1, ...
著者Ma, S.C, Lapin, D, Liu, L, Sun, Y, Song, W, Zhang, X.X, Logemann, E, Yu, D.L, Wang, J, Jirschitzka, J, Han, Z.F, SchulzeLefert, P, Parker, J.E, Chai, J.J.
登録日2020-08-13
公開日2020-12-16
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.02 Å)
主引用文献Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme.
Science, 370, 2020
7C7F
DownloadVisualize
BU of 7c7f by Molmil
Crystal structures of AKR1C3 binary complex with NADP+
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Aldo-keto reductase family 1 member C3, ...
著者Irie, K, Toyooka, N, Endo, S.
登録日2020-05-25
公開日2020-09-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Development of Novel AKR1C3 Inhibitors as New Potential Treatment for Castration-Resistant Prostate Cancer.
J.Med.Chem., 63, 2020
7C84
DownloadVisualize
BU of 7c84 by Molmil
Esterase AlinE4 mutant, D162A
分子名称: ACETATE ION, CADMIUM ION, GLYCEROL, ...
著者Li, Z, Li, J.
登録日2020-05-28
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.552 Å)
主引用文献Structure-guided protein engineering increases enzymatic activities of the SGNH family esterases.
Biotechnol Biofuels, 13, 2020
7C7Z
DownloadVisualize
BU of 7c7z by Molmil
Crystal structure of the flagellar junction protein FlgL from Legionella pneumophila
分子名称: Flagellar hook-associated protein 3
著者Song, W.S, Hong, H.J, Yoon, S.I.
登録日2020-05-27
公開日2020-08-12
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.06 Å)
主引用文献Structural study of the flagellar junction protein FlgL from Legionella pneumophila.
Biochem.Biophys.Res.Commun., 529, 2020
7CBI
DownloadVisualize
BU of 7cbi by Molmil
Crystal structure of threonyl-tRNA synthetase (ThrRS) from Salmonella enterica in complex with an inhibitor
分子名称: 1,2-ETHANEDIOL, 5-(7-bromanyl-6-chloranyl-4-oxidanylidene-quinazolin-3-yl)pentyl (2~{S},3~{R})-2-azanyl-3-oxidanyl-butanoate, GLYCEROL, ...
著者Guo, J, Chen, B, Zhou, H.
登録日2020-06-12
公開日2020-10-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Structure-guided optimization and mechanistic study of a class of quinazolinone-threonine hybrids as antibacterial ThrRS inhibitors.
Eur.J.Med.Chem., 207, 2020
7CQY
DownloadVisualize
BU of 7cqy by Molmil
Tetrathionate hydrolase from Acidithiobacillus ferrooxidans mutant - D325N
分子名称: SULFATE ION, Tetrathionate hydrolase
著者Tamada, T, Hirano, Y.
登録日2020-08-12
公開日2021-01-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.80035782 Å)
主引用文献Reaction mechanism of tetrathionate hydrolysis based on the crystal structure of tetrathionate hydrolase from Acidithiobacillus ferrooxidans.
Protein Sci., 30, 2020
7CCV
DownloadVisualize
BU of 7ccv by Molmil
Crystal structure of death-associated protein kinase 1 in complex with piceatannol
分子名称: Death-associated protein kinase 1, PICEATANNOL, SULFATE ION
著者Yokoyama, T, Suzuki, R, Mizuguchi, M.
登録日2020-06-18
公開日2021-01-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.753 Å)
主引用文献Crystal structure of death-associated protein kinase 1 in complex with the dietary compound resveratrol.
Iucrj, 8, 2020
7CSV
DownloadVisualize
BU of 7csv by Molmil
Pseudomonas aeruginosa antitoxin HigA
分子名称: HTH cro/C1-type domain-containing protein
著者Song, Y.J, Luo, G.H, Bao, R.
登録日2020-08-17
公開日2021-01-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Pseudomonas aeruginosa antitoxin HigA functions as a diverse regulatory factor by recognizing specific pseudopalindromic DNA motifs.
Environ.Microbiol., 23, 2021
7CFL
DownloadVisualize
BU of 7cfl by Molmil
X-ray structure of autolysin Acd24020 catalytic domain from Clostridium difficile
分子名称: CITRATE ANION, Putative cell wall hydrolase phosphatase-associated protein
著者Kamitori, S, Tamai, E.
登録日2020-06-26
公開日2020-11-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Structural and biochemical characterizations of the novel autolysin Acd24020 from Clostridioides difficile and its full-function catalytic domain as a lytic enzyme.
Mol.Microbiol., 115, 2021
7CTP
DownloadVisualize
BU of 7ctp by Molmil
Crystal Structure of Human FAM129B/MINERVA/NIBAN2
分子名称: GLYCEROL, Protein Niban 2
著者Hahn, H, Kim, H.S, Han, B.W.
登録日2020-08-20
公開日2020-11-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Insight on Functional Regulation of Human MINERVA Protein.
Int J Mol Sci, 21, 2020
7CI4
DownloadVisualize
BU of 7ci4 by Molmil
Crystal structure of P.aeruginosa LpxC in complex with inhibitor
分子名称: (2R)-2-azanyl-4-methylsulfonyl-N-[3-(trifluoromethyloxy)phenyl]butanamide, CHLORIDE ION, MAGNESIUM ION, ...
著者Mima, M, Baker, L.M, Surgenor, A, Robertson, A.
登録日2020-07-07
公開日2020-12-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity.
J.Med.Chem., 63, 2020

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon