PDB: 2682 件ウェブページステータス検索Chemie searchBIRD

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5J4D	E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon 分子名称: 16S ribosomal RNA, 25S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Svidritskiy, E, Korostelev, A.A. 登録日 2016-03-31 公開日 2016-05-18 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural Basis for Translation Termination on a Pseudouridylated Stop Codon. J.Mol.Biol., 428, 2016
5J8A	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-04-07 公開日 2016-07-06 最終更新日 2016-08-03 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
8BIP	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex 分子名称: 25S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Knorr, A.G, Mackens-Kiani, T, Musial, J, Berninghausen, O, Becker, T, Beatrix, B, Beckmann, R. 登録日 2022-11-02 公開日 2023-02-08 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The dynamic architecture of Map1- and NatB-ribosome complexes coordinates the sequential modifications of nascent polypeptide chains. Plos Biol., 21, 2023
6ZR2	Cryo-EM structure of respiratory complex I in the active state from Mus musculus at 3.1 A 分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Bridges, H.R, Blaza, J.N, Agip, A.N.A, Hirst, J. 登録日 2020-07-10 公開日 2020-10-21 最終更新日 2020-10-28 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of inhibitor-bound mammalian complex I. Nat Commun, 11, 2020
6ENU	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P) 分子名称: 16S ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Huter, P, Arenz, S, Wilson, D.N. 登録日 2017-10-06 公開日 2017-11-22 最終更新日 2018-01-31 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural Basis for Polyproline-Mediated Ribosome Stalling and Rescue by the Translation Elongation Factor EF-P. Mol. Cell, 68, 2017
6NBY	T.elongatus NDH (composite model) 分子名称: IRON/SULFUR CLUSTER, NAD(P)H-quinone oxidoreductase chain 4 1, NAD(P)H-quinone oxidoreductase subunit 1, ... 著者 Laughlin, T.G, Bayne, A, Trempe, J.-F, Savage, D.F, Davies, K.M. 登録日 2018-12-10 公開日 2019-02-27 最終更新日 2020-04-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of the complex I-like molecule NDH of oxygenic photosynthesis. Nature, 566, 2019
8V9J	Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S14, ... 著者 Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G. 登録日 2023-12-08 公開日 2024-02-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 A new family of bacterial ribosome hibernation factors. Nature, 626, 2024
8V9K	Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S2, ... 著者 Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G. 登録日 2023-12-08 公開日 2024-02-07 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 A new family of bacterial ribosome hibernation factors. Nature, 626, 2024
6VWL	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. 登録日 2020-02-20 公開日 2020-06-03 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020
6NBQ	T.elongatus NDH (data-set 1) 分子名称: IRON/SULFUR CLUSTER, NAD(P)H-quinone oxidoreductase chain 4 1, NAD(P)H-quinone oxidoreductase subunit 2, ... 著者 Laughlin, T.G, Bayne, A, Trempe, J.-F, Savage, D.F, Davies, K.M. 登録日 2018-12-09 公開日 2019-02-27 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of the complex I-like molecule NDH of oxygenic photosynthesis. Nature, 566, 2019
5EL6	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2015-11-04 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Nat Commun, 7, 2016
6Q8Y	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Tesina, P, Heckel, E, Cheng, J, Buschauer, R, Kater, L, Berninghausen, O, Becker, T, Beckmann, R. 登録日 2018-12-16 公開日 2019-03-13 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of the 80S ribosome-Xrn1 nuclease complex. Nat.Struct.Mol.Biol., 26, 2019
6WNT	50S ribosomal subunit without free 5S rRNA and perturbed PTC 分子名称: 23s-5s joint ribosomal RNA, 50S ribosomal protein L1, 50S ribosomal protein L10, ... 著者 Loveland, A.B, Korostelev, A.A, Mankin, A.S, Huang, S, Aleksashin, N.A, Klepacki, D, Reier, K, Kefi, A, Szal, A, Remme, J, Jaeger, L, Vazquez-Laslop, N. 登録日 2020-04-23 公開日 2020-06-24 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Ribosome engineering reveals the importance of 5S rRNA autonomy for ribosome assembly. Nat Commun, 11, 2020
8UU9	Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Seely, S.M, Basu, R.S, Gagnon, M.G. 登録日 2023-10-31 公開日 2024-02-28 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
6HA1	Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Crowe-McAuliffe, C, Graf, M, Huter, P, Abdelshahid, M, Novacek, J, Wilson, D.N. 登録日 2018-08-07 公開日 2018-08-29 最終更新日 2021-01-27 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6NTA	Modified ASL proline bound to Thermus thermophilus 70S (cognate) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hoffer, E.D, Maehigashi, T, Subaramanian, S, Hong, S, Dunham, C.M. 登録日 2019-01-28 公開日 2020-10-14 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Elife, 9, 2020
7TOQ	Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Loveland, A.B, Svidritskiy, E, Susorov, D, Lee, S, Park, A, Zvornicanin, S, Demo, G, Gao, F.B, Korostelev, A.A. 登録日 2022-01-24 公開日 2022-05-25 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Ribosome inhibition by C9ORF72-ALS/FTD-associated poly-PR and poly-GR proteins revealed by cryo-EM. Nat Commun, 13, 2022
6YSR	Structure of the P+9 stalled ribosome complex 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V. 登録日 2020-04-23 公開日 2020-08-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nat Commun, 11, 2020
6YWX	The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site 分子名称: 16S rRNA, 23S rRNA, 3-hydroxyisobutyryl-CoA hydrolase, ... 著者 Amunts, A, Itoh, Y, Naschberger, A. 登録日 2020-04-30 公開日 2020-11-11 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi. Nat Commun, 11, 2020
6S0K	Ribosome nascent chain in complex with SecA 分子名称: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... 著者 Jomaa, A, Wang, S, Shan, S, Ban, N. 登録日 2019-06-17 公開日 2019-10-09 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The molecular mechanism of cotranslational membrane protein recognition and targeting by SecA. Nat.Struct.Mol.Biol., 26, 2019
6TNU	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. 分子名称: 18S rRNA, 25S rRNA, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ... 著者 Buschauer, R, Cheng, J, Berninghausen, O, Tesina, P, Becker, T, Beckmann, R. 登録日 2019-12-10 公開日 2020-04-22 最終更新日 2020-04-29 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The Ccr4-Not complex monitors the translating ribosome for codon optimality. Science, 368, 2020
6T7T	Structure of yeast 80S ribosome stalled on poly(A) tract. 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Tesina, P, Buschauer, R, Cheng, J, Berninghausen, O, Becker, R, Beckmann, R. 登録日 2019-10-23 公開日 2019-12-25 最終更新日 2020-02-19 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts. Embo J., 39, 2020
8OO0	Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S0, ... 著者 Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. 登録日 2023-04-04 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
8OHD	60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native) 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Penchev, I, DaRosa, P.A, Becker, T, Beckmann, R, Kopito, R. 登録日 2023-03-21 公開日 2024-02-21 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER. Nature, 627, 2024
1QVF	Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui 分子名称: 23S ribosomal rna, 50S RIBOSOMAL PROTEIN L10E, 50S ribosomal protein L13P, ... 著者 Schmeing, T.M, Moore, P.B, Steitz, T.A. 登録日 2003-08-27 公開日 2003-11-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit RNA, 9, 2003

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