PDB: 227111 件ウェブページステータス検索Chemie searchBIRD

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6S0T	The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, sulfate, soaked with iodide 分子名称: IODIDE ION, Kanamycin B dioxygenase, NICKEL (II) ION, ... 著者 Mrugala, B, Porebski, P.J, Niedzialkowska, E, Cymborowski, M.T, Minor, W, Borowski, T. 登録日 2019-06-18 公開日 2020-07-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ)-an enzyme with a broad range of substrates. Febs J., 288, 2021
6SGF	Molecular insight into a new low affinity xylan binding module CBM86, from the xylanolytic gut symbiont Roseburia intestinalis. 分子名称: Beta-xylanase, CADMIUM ION, CHLORIDE ION, ... 著者 Ejby, M, Abou Hachem, M, Leth, M.L, Guskov, A, Slotboom, D. 登録日 2019-08-04 公開日 2019-11-20 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.756 Å) 主引用文献 Molecular insight into a new low-affinity xylan binding module from the xylanolytic gut symbiont Roseburia intestinalis. Febs J., 287, 2020
6THF	Crystal structure of two-domain Cu nitrite reductase from Bradyrhizobium sp. ORS 375 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ... 著者 Sasaki, D, Watanabe, T.F, Eady, R.R, Garratt, R.C, Antonyuk, S.V, Hasnain, S.S. 登録日 2019-11-20 公開日 2020-04-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Reverse protein engineering of a novel 4-domain copper nitrite reductase reveals functional regulation by protein-protein interaction. Febs J., 288, 2021
6R82	Crystal structure of the TLDc domain of Skywalker/TBC1D24 from Drosophila melanogaster 分子名称: GTPase-activating protein skywalker 著者 Fischer, B, Paesmans, J, Versees, W. 登録日 2019-03-30 公開日 2019-07-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.046 Å) 主引用文献 TBC1D24-TLDc-related epilepsy exercise-induced dystonia: rescue by antioxidants in a disease model. Brain, 142, 2019
6S1U	Crystal structure of dimeric M-PMV protease C7A/D26N/C106A mutant in complex with inhibitor 分子名称: Gag-Pro-Pol polyprotein, PRO-0A1-VAL-PSA-ALA-MET-THR 著者 Wosicki, S, Gilski, M, Jaskolski, M, Zabranska, H, Pichova, I. 登録日 2019-06-19 公開日 2019-10-16 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Comparison of a retroviral protease in monomeric and dimeric states. Acta Crystallogr D Struct Biol, 75, 2019
6S1W	Crystal structure of dimeric M-PMV protease D26N mutant 分子名称: Gag-Pro-Pol polyprotein 著者 Wosicki, S, Gilski, M, Jaskolski, M, Zabranska, H, Pichova, I. 登録日 2019-06-19 公開日 2019-10-16 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Comparison of a retroviral protease in monomeric and dimeric states. Acta Crystallogr D Struct Biol, 75, 2019
6S0R	The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus complex with nickel, sulfate and chloride 分子名称: CHLORIDE ION, Kanamycin B dioxygenase, NICKEL (II) ION, ... 著者 Mrugala, B, Porebski, P.J, Niedzialkowska, E, Cymborowski, M.T, Minor, W, Borowski, T. 登録日 2019-06-18 公開日 2020-07-08 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ)-an enzyme with a broad range of substrates. Febs J., 288, 2021
6THE	Crystal structure of core domain of four-domain heme-cupredoxin-Cu nitrite reductase from Bradyrhizobium sp. ORS 375 分子名称: CHLORIDE ION, COPPER (II) ION, Copper-containing nitrite reductase, ... 著者 Sasaki, D, Watanabe, T.F, Eady, R.R, Garratt, R.C, Antonyuk, S.V, Hasnain, S.S. 登録日 2019-11-20 公開日 2020-04-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Reverse protein engineering of a novel 4-domain copper nitrite reductase reveals functional regulation by protein-protein interaction. Febs J., 288, 2021
5CFY	CRYSTAL STRUCTURE OF GLTPH R397A IN COMPLEX WITH NA+ AND L-ASP 分子名称: 425aa long hypothetical proton glutamate symport protein, ASPARTIC ACID, SODIUM ION 著者 Boudker, O, Oh, S. 登録日 2015-07-08 公開日 2016-04-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Coupled ion binding and structural transitions along the transport cycle of glutamate transporters. Elife, 3, 2014
5DT1	Crystal structure of human Fab CAP256-VRC26.25, a potent V1V2-directed HIV-1 broadly neutralizing antibody 分子名称: Fab Heavy chain of broadly neutralizing antibody VRC26.25, Fab Light chain of broadly neutralizing antibody VRC26.25, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Gorman, J, Kwong, P.D. 登録日 2015-09-17 公開日 2015-10-21 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.954 Å) 主引用文献 New Member of the V1V2-Directed CAP256-VRC26 Lineage That Shows Increased Breadth and Exceptional Potency. J.Virol., 90, 2015
6I0I	Structure of the streptomyces subtilisin and TAMP inhibitor (SSTI) 分子名称: Transglutaminase-activating metalloprotease inhibitor 著者 Schmelz, S, Juettner, N.E, Fuchsbauer, H.L, Scrima, A. 登録日 2018-10-26 公開日 2019-09-04 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.448 Å) 主引用文献 The N-terminal peptide of the transglutaminase-activating metalloprotease inhibitor from Streptomyces mobaraensis accommodates both inhibition and glutamine cross-linking sites. Febs J., 287, 2020
5FM1	Structure of gamma-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure 分子名称: SPINDLE POLE BODY COMPONENT 110, SPINDLE POLE BODY COMPONENT SPC97, SPINDLE POLE BODY COMPONENT SPC98, ... 著者 Greenberg, C.H, Kollman, J, Zelter, A, Johnson, R, MacCoss, M.J, Davis, T.N, Agard, D.A, Sali, A. 登録日 2015-10-30 公開日 2016-02-03 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8 Å) 主引用文献 Structure of Gamma-Tubulin Small Complex Based on a Cryo-Em Map, Chemical Cross-Links, and a Remotely Related Structure. J.Struct.Biol., 194, 2016
6FHP	DAIP in complex with a C-terminal fragment of thermolysin 分子名称: Dispase autolysis-inducing protein, Thermolysin 著者 Schmelz, S, Fiebig, D, Fuchsbauer, H.L, Blankenfeldt, W, Scrima, A. 登録日 2018-01-15 公開日 2018-09-12 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.703 Å) 主引用文献 Destructive twisting of neutral metalloproteases: the catalysis mechanism of the Dispase autolysis-inducing protein from Streptomyces mobaraensis DSM 40487. FEBS J., 285, 2018
7DFS	Crystal structure of a novel 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase from Fusarium oxysporum 12S - Rha-GlcA complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase, alpha-D-mannopyranose, ... 著者 Kondo, T, Arakawa, T, Fushinobu, S, Sakamoto, T. 登録日 2020-11-09 公開日 2021-03-17 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 Biochemical and structural characterization of a novel 4-O-alpha-l-rhamnosyl-beta-d-glucuronidase from Fusarium oxysporum. Febs J., 288, 2021
3J4Q	Pseudo-atomic model of the AKAP18-PKA complex in a bent conformation derived from electron microscopy 分子名称: A-kinase anchor protein 18, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type II-alpha regulatory subunit 著者 Reichow, S.L, Gonen, T. 登録日 2013-09-25 公開日 2013-11-13 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (35 Å) 主引用文献 Intrinsic disorder within an AKAP-protein kinase A complex guides local substrate phosphorylation. Elife, 2, 2013
7DFQ	Crystal Structure of a novel 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase from Fusarium oxysporum 12S, ligand-free form 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-alpha-L-rhamnosyl-beta-D-glucuronidase 著者 Kondo, T, Arakawa, T, Fushinobu, S, Sakamoto, T. 登録日 2020-11-09 公開日 2021-03-17 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Biochemical and structural characterization of a novel 4-O-alpha-l-rhamnosyl-beta-d-glucuronidase from Fusarium oxysporum. Febs J., 288, 2021
3J4U	A new topology of the HK97-like fold revealed in Bordetella bacteriophage: non-covalent chainmail secured by jellyrolls 分子名称: cementing protein, major capsid protein 著者 Zhang, X, Guo, H, Jin, L, Czornyj, E, Hodes, A, Hui, W.H, Nieh, A.W, Miller, J.F, Zhou, Z.H. 登録日 2013-10-09 公開日 2013-12-25 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 A resolution. Elife, 2, 2013
3J6C	Cryo-EM structure of MAVS CARD filament 分子名称: Mitochondrial antiviral-signaling protein 著者 Xu, H, He, X, Zheng, H, Huang, L.J, Hou, F, Yu, Z, de la Cruz, M.J, Borkowski, B, Zhang, X, Chen, Z.J, Jiang, Q.-X. 登録日 2014-02-04 公開日 2014-03-05 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (9.6 Å) 主引用文献 Structural basis for the prion-like MAVS filaments in antiviral innate immunity. Elife, 3, 2014
3J2Z	Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab m10 分子名称: m10 heavy chain, m10 light chain 著者 Sun, S, Xiang, Y, Rossmann, M.G. 登録日 2013-01-28 公開日 2013-04-24 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (16.9 Å) 主引用文献 Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization. Elife, 2, 2013
3J2W	Electron cryo-microscopy of Chikungunya virus 分子名称: Capsid protein, Glycoprotein E1, Glycoprotein E2 著者 Sun, S, Xiang, Y, Rossmann, M.G. 登録日 2013-01-28 公開日 2013-04-24 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (5 Å) 主引用文献 Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization. Elife, 2, 2013
3J4R	Pseudo-atomic model of the AKAP18-PKA Complex in a linear conformation derived from electron microscopy 分子名称: A-kinase anchor protein 18, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type II-alpha regulatory subunit 著者 Reichow, S.L, Gonen, T. 登録日 2013-09-25 公開日 2013-11-13 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (35 Å) 主引用文献 Intrinsic disorder within an AKAP-protein kinase A complex guides local substrate phosphorylation. Elife, 2, 2013
3J2Y	Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab 9.8B 分子名称: 9.8B heavy chain, 9.8B light chain 著者 Sun, S, Xiang, Y, Rossmann, M.G. 登録日 2013-01-28 公開日 2013-04-24 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (14.9 Å) 主引用文献 Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization. Elife, 2, 2013
3J2X	Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab m242 分子名称: m242 heavy chain, m242 light chain 著者 Sun, S, Xiang, Y, Rossmann, M.G. 登録日 2013-01-28 公開日 2013-04-24 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (15.6 Å) 主引用文献 Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization. Elife, 2, 2013
3J30	Electron Cryo-microscopy of Chikungunya VLP in complex with neutralizing antibody Fab CHK152 分子名称: CHK152 heavy chain, CHK152 light chain 著者 Sun, S, Xiang, Y, Rossmann, M.G. 登録日 2013-01-28 公開日 2013-04-24 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (16 Å) 主引用文献 Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization. Elife, 2, 2013
7F3Y	Wild-type Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with methotrexate (MTX), NADPH and dUMP 分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Bifunctional dihydrofolate reductase-thymidylate synthase, GLYCEROL, ... 著者 Vanichtanankul, J, Tanramluk, D, Yuvaniyama, J, Yuthavong, Y. 登録日 2021-06-17 公開日 2021-09-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.252 Å) 主引用文献 MANORAA: A machine learning platform to guide protein-ligand design by anchors and influential distances. Structure, 30, 2022

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