5B34
 
 | | Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles in Complex with Iodine-labeled Detergent HAD13a Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA | | 分子名称: | 2,4,6-tris(iodanyl)-5-(octanoylamino)benzene-1,3-dicarboxylic acid, Bacteriorhodopsin, DECANE, ... | | 著者 | Mizohata, E, Nakane, T. | | 登録日 | 2016-02-10 | | 公開日 | 2016-11-09 | | 最終更新日 | 2023-09-06 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
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5B35
 | | Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA | | 分子名称: | (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, Bacteriorhodopsin, DECANE, ... | | 著者 | Mizohata, E, Nakane, T, Suzuki, M. | | 登録日 | 2016-02-10 | | 公開日 | 2016-11-09 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | | 主引用文献 | Membrane protein structure determination by SAD, SIR, or SIRAS phasing in serial femtosecond crystallography using an iododetergent
Proc.Natl.Acad.Sci.USA, 113, 2016
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1BCT
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1BHB
 | | Three-dimensional structure of (1-71) bacterioopsin solubilized in methanol-chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy | | 分子名称: | BACTERIORHODOPSIN | | 著者 | Orekhov, V.Y, Pervushin, K.V, Popov, A.I, Musina, L.Y, Arseniev, A.S. | | 登録日 | 1993-10-11 | | 公開日 | 1994-01-31 | | 最終更新日 | 2024-05-22 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Three-dimensional structure of (1-71)bacterioopsin solubilized in methanol/chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy.
Eur.J.Biochem., 219, 1994
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1BHA
 | | THREE-DIMENSIONAL STRUCTURE OF (1-71) BACTERIOOPSIN SOLUBILIZED IN METHANOL-CHLOROFORM AND SDS MICELLES DETERMINED BY 15N-1H HETERONUCLEAR NMR SPECTROSCOPY | | 分子名称: | BACTERIORHODOPSIN | | 著者 | Pervushin, K.V, Orekhov, V.Y, Popov, A.I, Musina, L.Y, Arseniev, A.S. | | 登録日 | 1993-10-11 | | 公開日 | 1994-01-31 | | 最終更新日 | 2024-05-22 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Three-dimensional structure of (1-71)bacterioopsin solubilized in methanol/chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy.
Eur.J.Biochem., 219, 1994
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2WJK
 | | Bacteriorhodopsin mutant E204D | | 分子名称: | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, RETINAL | | 著者 | Potschies, M, Hofmann, E, Gerwert, K. | | 登録日 | 2009-05-27 | | 公開日 | 2010-08-25 | | 最終更新日 | 2023-12-13 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Directional proton transfer in membrane proteins achieved through protonated protein-bound water molecules: a proton diode.
Angew. Chem. Int. Ed. Engl., 49, 2010
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4WAV
 | | Crystal Structure of Haloquadratum walsbyi bacteriorhodopsin mutant D93N | | 分子名称: | Bacteriorhodopsin-I, RETINAL, [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate | | 著者 | Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y. | | 登録日 | 2014-09-02 | | 公開日 | 2015-09-23 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Crystal structure of an acid-tolerant light-driven proton pump at 1.85 Angstroms resolution
To be published
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7Q35
 | | Crystal structure of the mutant bacteriorhodopsin pressurized with krypton | | 分子名称: | Bacteriorhodopsin, EICOSANE, HEXANE, ... | | 著者 | Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. | | 登録日 | 2021-10-27 | | 公開日 | 2022-04-27 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action.
Commun Biol, 5, 2022
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3HAO
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3HAN
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4OV0
 | | Structure of Bacteriorhdopsin Transferred from Amphipol A8-35 to a Lipidic Mesophase | | 分子名称: | Bacteriorhodopsin, RETINAL | | 著者 | Polovinkin, V, Gushchin, I, Sintsov, M, Round, E, Balandin, T, Chervakov, P, Schevchenko, V, Utrobin, P, Popov, A, Borshchevskiy, V, Mishin, A, Kuklin, A, Willbold, D, Popot, J.L, Gordeliy, V. | | 登録日 | 2014-02-19 | | 公開日 | 2014-10-01 | | 最終更新日 | 2017-11-22 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase.
J.Membr.Biol., 247, 2014
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1TN5
 | | Structure of bacterorhodopsin mutant K41P | | 分子名称: | Bacteriorhodopsin, RETINAL | | 著者 | Yohannan, S, Yang, D, Faham, S, Boulting, G, Whitelegge, J, Bowie, J.U. | | 登録日 | 2004-06-11 | | 公開日 | 2004-10-19 | | 最終更新日 | 2021-10-27 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Proline substitutions are not easily accommodated in a membrane protein
J.Mol.Biol., 341, 2004
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1TN0
 | | Structure of bacterorhodopsin mutant A51P | | 分子名称: | Bacteriorhodopsin, RETINAL | | 著者 | Yohannan, S, Yang, D, Faham, S, Boulting, G, Whitelegge, J, Bowie, J.U. | | 登録日 | 2004-06-11 | | 公開日 | 2004-10-12 | | 最終更新日 | 2023-08-23 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Proline substitutions are not easily accommodated in a membrane protein
J.Mol.Biol., 341, 2004
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5BR2
 | | Structure of bacteriorhodopsin crystallized from ND-MSP1 | | 分子名称: | Bacteriorhodopsin, RETINAL | | 著者 | Nikolaev, M, Round, E, Gushchin, I, Gordeliy, V. | | 登録日 | 2015-05-29 | | 公開日 | 2016-09-14 | | 最終更新日 | 2018-04-25 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Integral Membrane Proteins Can Be Crystallized Directly from Nanodiscs
Cryst.Growth Des., 17, 2017
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5BR5
 | | Structure of bacteriorhodopsin crystallized from ND-MSP1E3D1 | | 分子名称: | Bacteriorhodopsin, RETINAL | | 著者 | Nikolaev, M, Round, E, Gushchin, I, Gordeliy, V. | | 登録日 | 2015-05-29 | | 公開日 | 2016-09-14 | | 最終更新日 | 2017-05-31 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Integral Membrane Proteins Can Be Crystallized Directly from Nanodiscs
Cryst.Growth Des., 17, 2017
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4QID
 | | Crystal structure of Haloquadratum walsbyi bacteriorhodopsin | | 分子名称: | ACETATE ION, Bacteriorhodopsin-I, RETINAL, ... | | 著者 | Wang, A.H.J, Hsu, M.F, Yang, C.S, Fu, H.Y. | | 登録日 | 2014-05-30 | | 公開日 | 2015-07-29 | | 実験手法 | X-RAY DIFFRACTION (2.57 Å) | | 主引用文献 | An acid-tolerant light-driven proton pump
To be Published
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7VSO
 | | Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles in Complex with HAD16 Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA | | 分子名称: | 2-[[(2R)-2-(3-bromanyl-5-iodanyl-phenyl)carbonyloxy-3-tetradecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Bacteriorhodopsin, ... | | 著者 | Mizohata, E, Nakane, T, Hanashima, S. | | 登録日 | 2021-10-27 | | 公開日 | 2022-02-16 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.35 Å) | | 主引用文献 | Heavy Atom Detergent/Lipid Combined X-ray Crystallography for Elucidating the Structure-Function Relationships of Membrane Proteins.
Membranes (Basel), 11, 2021
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7W74
 | | Crystal structure of DTG rhodopsin from Pseudomonas putida | | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin-like protein, ... | | 著者 | Suzuki, K, Konno, M, Bagherzadeh, R, Inoue, K, Murata, T. | | 登録日 | 2021-12-03 | | 公開日 | 2022-02-23 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.84 Å) | | 主引用文献 | Structural characterization of proton-pumping rhodopsin lacking a cytoplasmic proton donor residue by X-ray crystallography.
J.Biol.Chem., 298, 2022
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7Q38
 | | Crystal structure of the mutant bacteriorhodopsin pressurized with argon | | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ARGON, Bacteriorhodopsin, ... | | 著者 | Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. | | 登録日 | 2021-10-27 | | 公開日 | 2022-04-27 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action.
Commun Biol, 5, 2022
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3HAP
 | | Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles | | 分子名称: | 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Bacteriorhodopsin, DECANE, ... | | 著者 | Joh, N.H, Yang, D, Bowie, J.U. | | 登録日 | 2009-05-02 | | 公開日 | 2009-09-22 | | 最終更新日 | 2021-10-13 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Similar energetic contributions of packing in the core of membrane and water-soluble proteins.
J.Am.Chem.Soc., 131, 2009
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3HAS
 | | Crystal structure of bacteriorhodopsin mutant L152A crystallized from bicelles | | 分子名称: | 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Bacteriorhodopsin, DECANE, ... | | 著者 | Joh, N.H, Yang, D, Bowie, J.U. | | 登録日 | 2009-05-02 | | 公開日 | 2009-09-22 | | 最終更新日 | 2021-10-13 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Similar energetic contributions of packing in the core of membrane and water-soluble proteins.
J.Am.Chem.Soc., 131, 2009
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3HAQ
 | | Crystal structure of bacteriorhodopsin mutant I148A crystallized from bicelles | | 分子名称: | 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Bacteriorhodopsin, DECANE, ... | | 著者 | Joh, N.H, Yang, D, Bowie, J.U. | | 登録日 | 2009-05-02 | | 公開日 | 2009-09-22 | | 最終更新日 | 2021-10-13 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Similar energetic contributions of packing in the core of membrane and water-soluble proteins.
J.Am.Chem.Soc., 131, 2009
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3HAR
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8YEJ
 | | Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer | | 分子名称: | GtCCR2, RETINAL | | 著者 | Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O. | | 登録日 | 2024-02-22 | | 公開日 | 2024-09-04 | | 最終更新日 | 2024-10-02 | | 実験手法 | ELECTRON MICROSCOPY (2.86 Å) | | 主引用文献 | The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 84, 2024
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8YEK
 | | Cryo-EM structure of the channelrhodopsin GtCCR2 | | 分子名称: | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, GtCCR2, RETINAL | | 著者 | Tanaka, T, Iida, W, Sano, F.K, Oda, K, Shihoya, W, Nureki, O. | | 登録日 | 2024-02-22 | | 公開日 | 2024-09-04 | | 最終更新日 | 2024-10-02 | | 実験手法 | ELECTRON MICROSCOPY (2.73 Å) | | 主引用文献 | The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4.
Mol.Cell, 84, 2024
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