Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3E5E
DownloadVisualize
BU of 3e5e by Molmil
Crystal Structures of the SMK box (SAM-III) Riboswitch with SAH
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SMK box (SAM-III) Riboswitch for RNA, STRONTIUM ION
著者Lu, C.
登録日2008-08-13
公開日2008-10-07
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism.
Nat.Struct.Mol.Biol., 15, 2008
6DMC
DownloadVisualize
BU of 6dmc by Molmil
ppGpp Riboswitch bound to ppGpp, native structure
分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, POTASSIUM ION, ...
著者Peselis, A, Serganov, A.
登録日2018-06-04
公開日2018-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6DMD
DownloadVisualize
BU of 6dmd by Molmil
ppGpp Riboswitch bound to ppGpp, manganese chloride structure
分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ...
著者Peselis, A, Serganov, A.
登録日2018-06-05
公開日2018-11-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6DNR
DownloadVisualize
BU of 6dnr by Molmil
PRPP Riboswitch bound to PRPP, ligand-free structure
分子名称: MAGNESIUM ION, PRPP Riboswitch
著者Peselis, A, Serganov, A.
登録日2018-06-07
公開日2018-11-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.896 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6DLQ
DownloadVisualize
BU of 6dlq by Molmil
PRPP Riboswitch bound to PRPP, manganese chloride soaked structure
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, MANGANESE (II) ION, POTASSIUM ION, ...
著者Peselis, A, Serganov, A.
登録日2018-06-02
公開日2018-11-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6DLT
DownloadVisualize
BU of 6dlt by Molmil
PRPP Riboswitch bound to PRPP, native structure
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, MAGNESIUM ION, PRPP Riboswitch, ...
著者Peselis, A, Serganov, A.
登録日2018-06-02
公開日2018-11-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6DME
DownloadVisualize
BU of 6dme by Molmil
ppGpp Riboswitch bound to ppGpp, thallium acetate structure
分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, THALLIUM (I) ION, ...
著者Peselis, A, Serganov, A.
登録日2018-06-05
公開日2018-11-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.702 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6DLR
DownloadVisualize
BU of 6dlr by Molmil
PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ACETATE ION, IRIDIUM HEXAMMINE ION, ...
著者Peselis, A, Serganov, A.
登録日2018-06-02
公開日2018-11-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.656 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
6DLS
DownloadVisualize
BU of 6dls by Molmil
PRPP Riboswitch bound to PRPP, thallium acetate soaked structure
分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, MAGNESIUM ION, PRPP Riboswitch, ...
著者Peselis, A, Serganov, A.
登録日2018-06-02
公開日2018-11-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.885 Å)
主引用文献ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.
Nat. Chem. Biol., 14, 2018
3GES
DownloadVisualize
BU of 3ges by Molmil
Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine
分子名称: 6-O-methylguanine, ACETATE ION, COBALT HEXAMMINE(III), ...
著者Gilbert, S.D, Batey, R.T.
登録日2009-02-26
公開日2009-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs
Structure, 17, 2009
3GAO
DownloadVisualize
BU of 3gao by Molmil
Crystal structure of the guanine riboswitch bound to xanthine.
分子名称: ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ...
著者Gilbert, S.D, Batey, R.T.
登録日2009-02-18
公開日2009-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs.
Structure, 17, 2009
3NPQ
DownloadVisualize
BU of 3npq by Molmil
Structure of the S-adenosylhomocysteine riboswitch at 2.18 A
分子名称: COBALT HEXAMMINE(III), S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
著者Reyes, F.E, Edwards, A.E, Batey, R.T.
登録日2010-06-28
公開日2010-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1814 Å)
主引用文献Structural basis for recognition of S-adenosylhomocysteine by riboswitches.
Rna, 16, 2010
3GER
DownloadVisualize
BU of 3ger by Molmil
Guanine riboswitch bound to 6-chloroguanine
分子名称: 6-chloroguanine, ACETATE ION, COBALT HEXAMMINE(III), ...
著者Gilbert, S.D, Batey, R.T.
登録日2009-02-25
公開日2009-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs
Structure, 17, 2009
3G4M
DownloadVisualize
BU of 3g4m by Molmil
Crystal structure of guanine riboswitch bound to 2-aminopurine
分子名称: 9H-purin-2-amine, ACETATE ION, COBALT HEXAMMINE(III), ...
著者Gilbert, S.D, Batey, R.T.
登録日2009-02-04
公開日2009-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs.
Structure, 17, 2009
3NPN
DownloadVisualize
BU of 3npn by Molmil
Structure of the s-adenosylhomocysteine riboswitch at 3.0A
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
著者Reyes, F.E, Edwards, A.E, Batey, R.T.
登録日2010-06-28
公開日2010-10-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.792 Å)
主引用文献Structural basis for recognition of S-adenosylhomocysteine by riboswitches.
Rna, 16, 2010
3IRW
DownloadVisualize
BU of 3irw by Molmil
Structure of a c-di-GMP riboswitch from V. cholerae
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
著者Smith, K.D.
登録日2009-08-24
公開日2009-11-10
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural basis of ligand binding by a c-di-GMP riboswitch.
Nat.Struct.Mol.Biol., 16, 2009
2G9C
DownloadVisualize
BU of 2g9c by Molmil
Modified pyrimidines Specifically bind the purine riboswitch
分子名称: ACETATE ION, COBALT HEXAMMINE(III), PYRIMIDINE-2,4,6-TRIAMINE, ...
著者Gilbert, S.D, Mediatore, S.J, Batey, R.T.
登録日2006-03-06
公開日2006-11-21
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Modified pyrimidines specifically bind the purine riboswitch.
J.Am.Chem.Soc., 128, 2006
3EGZ
DownloadVisualize
BU of 3egz by Molmil
Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch
分子名称: 7-CHLOROTETRACYCLINE, MAGNESIUM ION, Tetracycline aptamer and artificial riboswitch, ...
著者Xiao, H, Edwards, T.E, Ferre-D'Amare, A.R.
登録日2008-09-11
公開日2008-10-28
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch
Chem.Biol., 15, 2008
2B57
DownloadVisualize
BU of 2b57 by Molmil
Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine
分子名称: 65-MER, 9H-PURINE-2,6-DIAMINE, ACETATE ION, ...
著者Gilbert, S.D, Stoddard, C.D, Wise, S.J, Batey, R.T.
登録日2005-09-27
公開日2006-05-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain.
J.Mol.Biol., 359, 2006
2CKY
DownloadVisualize
BU of 2cky by Molmil
Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand
分子名称: MAGNESIUM ION, NUCLEIC ACID, OSMIUM ION, ...
著者Thore, S, Leibundgut, M, Ban, N.
登録日2006-04-24
公開日2006-05-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of the Eukaryotic Thiamine Pyrophosphate Riboswitch with its Regulatory Ligand.
Science, 312, 2006
6LAU
DownloadVisualize
BU of 6lau by Molmil
the wildtype SAM-VI riboswitch bound to SAH
分子名称: CESIUM ION, GUANOSINE-5'-TRIPHOSPHATE, RNA (54-MER), ...
著者Ren, A, Sun, A.
登録日2019-11-13
公開日2020-01-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.109 Å)
主引用文献SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAX
DownloadVisualize
BU of 6lax by Molmil
the mutant SAM-VI riboswitch (U6C) bound to SAM
分子名称: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A
著者Sun, A, Ren, A.
登録日2019-11-13
公開日2020-01-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAZ
DownloadVisualize
BU of 6laz by Molmil
the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1
分子名称: (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-hydroxyethyl)amino]-2-azaniumyl-butanoate, MAGNESIUM ION, RNA (55-MER), ...
著者Ren, A, Sun, A.
登録日2019-11-13
公開日2020-01-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.76 Å)
主引用文献SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAS
DownloadVisualize
BU of 6las by Molmil
the wildtype SAM-VI riboswitch bound to SAM
分子名称: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A
著者Ren, A, Sun, A.
登録日2019-11-13
公開日2020-01-01
実験手法X-RAY DIFFRACTION (2.708 Å)
主引用文献SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6OD9
DownloadVisualize
BU of 6od9 by Molmil
Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser
分子名称: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, CESIUM ION, MAGNESIUM ION, ...
著者Jones, C.P, Tran, B, Ferre-D'Amare, A.R.
登録日2019-03-26
公開日2019-07-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (4.102 Å)
主引用文献Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser.
Acta Crystallogr.,Sect.F, 75, 2019

221716

件を2024-06-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon