PDB: 446 件ウェブページステータス検索Chemie searchBIRD

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3E5E	Crystal Structures of the SMK box (SAM-III) Riboswitch with SAH 分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SMK box (SAM-III) Riboswitch for RNA, STRONTIUM ION 著者 Lu, C. 登録日 2008-08-13 公開日 2008-10-07 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structures of the SAM-III/S(MK) riboswitch reveal the SAM-dependent translation inhibition mechanism. Nat.Struct.Mol.Biol., 15, 2008
6DMC	ppGpp Riboswitch bound to ppGpp, native structure 分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, POTASSIUM ION, ... 著者 Peselis, A, Serganov, A. 登録日 2018-06-04 公開日 2018-11-14 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
6DMD	ppGpp Riboswitch bound to ppGpp, manganese chloride structure 分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Peselis, A, Serganov, A. 登録日 2018-06-05 公開日 2018-11-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
6DNR	PRPP Riboswitch bound to PRPP, ligand-free structure 分子名称: MAGNESIUM ION, PRPP Riboswitch 著者 Peselis, A, Serganov, A. 登録日 2018-06-07 公開日 2018-11-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.896 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
6DLQ	PRPP Riboswitch bound to PRPP, manganese chloride soaked structure 分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, MANGANESE (II) ION, POTASSIUM ION, ... 著者 Peselis, A, Serganov, A. 登録日 2018-06-02 公開日 2018-11-14 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
6DLT	PRPP Riboswitch bound to PRPP, native structure 分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, MAGNESIUM ION, PRPP Riboswitch, ... 著者 Peselis, A, Serganov, A. 登録日 2018-06-02 公開日 2018-11-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
6DME	ppGpp Riboswitch bound to ppGpp, thallium acetate structure 分子名称: GUANOSINE-5',3'-TETRAPHOSPHATE, MAGNESIUM ION, THALLIUM (I) ION, ... 著者 Peselis, A, Serganov, A. 登録日 2018-06-05 公開日 2018-11-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.702 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
6DLR	PRPP Riboswitch bound to PRPP, iridium-hexamine soaked structure 分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, ACETATE ION, IRIDIUM HEXAMMINE ION, ... 著者 Peselis, A, Serganov, A. 登録日 2018-06-02 公開日 2018-11-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.656 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
6DLS	PRPP Riboswitch bound to PRPP, thallium acetate soaked structure 分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, MAGNESIUM ION, PRPP Riboswitch, ... 著者 Peselis, A, Serganov, A. 登録日 2018-06-02 公開日 2018-11-14 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.885 Å) 主引用文献 ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands. Nat. Chem. Biol., 14, 2018
3GES	Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine 分子名称: 6-O-methylguanine, ACETATE ION, COBALT HEXAMMINE(III), ... 著者 Gilbert, S.D, Batey, R.T. 登録日 2009-02-26 公開日 2009-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs Structure, 17, 2009
3GAO	Crystal structure of the guanine riboswitch bound to xanthine. 分子名称: ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ... 著者 Gilbert, S.D, Batey, R.T. 登録日 2009-02-18 公開日 2009-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs. Structure, 17, 2009
3NPQ	Structure of the S-adenosylhomocysteine riboswitch at 2.18 A 分子名称: COBALT HEXAMMINE(III), S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH 著者 Reyes, F.E, Edwards, A.E, Batey, R.T. 登録日 2010-06-28 公開日 2010-10-06 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1814 Å) 主引用文献 Structural basis for recognition of S-adenosylhomocysteine by riboswitches. Rna, 16, 2010
3GER	Guanine riboswitch bound to 6-chloroguanine 分子名称: 6-chloroguanine, ACETATE ION, COBALT HEXAMMINE(III), ... 著者 Gilbert, S.D, Batey, R.T. 登録日 2009-02-25 公開日 2009-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs Structure, 17, 2009
3G4M	Crystal structure of guanine riboswitch bound to 2-aminopurine 分子名称: 9H-purin-2-amine, ACETATE ION, COBALT HEXAMMINE(III), ... 著者 Gilbert, S.D, Batey, R.T. 登録日 2009-02-04 公開日 2009-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Adaptive ligand binding by the purine riboswitch in the recognition of Guanine and adenine analogs. Structure, 17, 2009
3NPN	Structure of the s-adenosylhomocysteine riboswitch at 3.0A 分子名称: S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLHOMOCYSTEINE RIBOSWITCH 著者 Reyes, F.E, Edwards, A.E, Batey, R.T. 登録日 2010-06-28 公開日 2010-10-06 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.792 Å) 主引用文献 Structural basis for recognition of S-adenosylhomocysteine by riboswitches. Rna, 16, 2010
3IRW	Structure of a c-di-GMP riboswitch from V. cholerae 分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ... 著者 Smith, K.D. 登録日 2009-08-24 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis of ligand binding by a c-di-GMP riboswitch. Nat.Struct.Mol.Biol., 16, 2009
2G9C	Modified pyrimidines Specifically bind the purine riboswitch 分子名称: ACETATE ION, COBALT HEXAMMINE(III), PYRIMIDINE-2,4,6-TRIAMINE, ... 著者 Gilbert, S.D, Mediatore, S.J, Batey, R.T. 登録日 2006-03-06 公開日 2006-11-21 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Modified pyrimidines specifically bind the purine riboswitch. J.Am.Chem.Soc., 128, 2006
3EGZ	Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch 分子名称: 7-CHLOROTETRACYCLINE, MAGNESIUM ION, Tetracycline aptamer and artificial riboswitch, ... 著者 Xiao, H, Edwards, T.E, Ferre-D'Amare, A.R. 登録日 2008-09-11 公開日 2008-10-28 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch Chem.Biol., 15, 2008
2B57	Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine 分子名称: 65-MER, 9H-PURINE-2,6-DIAMINE, ACETATE ION, ... 著者 Gilbert, S.D, Stoddard, C.D, Wise, S.J, Batey, R.T. 登録日 2005-09-27 公開日 2006-05-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain. J.Mol.Biol., 359, 2006
2CKY	Structure of the Arabidopsis thaliana thiamine pyrophosphate riboswitch with its regulatory ligand 分子名称: MAGNESIUM ION, NUCLEIC ACID, OSMIUM ION, ... 著者 Thore, S, Leibundgut, M, Ban, N. 登録日 2006-04-24 公開日 2006-05-08 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of the Eukaryotic Thiamine Pyrophosphate Riboswitch with its Regulatory Ligand. Science, 312, 2006
6LAU	the wildtype SAM-VI riboswitch bound to SAH 分子名称: CESIUM ION, GUANOSINE-5'-TRIPHOSPHATE, RNA (54-MER), ... 著者 Ren, A, Sun, A. 登録日 2019-11-13 公開日 2020-01-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.109 Å) 主引用文献 SAM-VI riboswitch structure and signature for ligand discrimination. Nat Commun, 10, 2019
6LAX	the mutant SAM-VI riboswitch (U6C) bound to SAM 分子名称: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A 著者 Sun, A, Ren, A. 登録日 2019-11-13 公開日 2020-01-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 SAM-VI riboswitch structure and signature for ligand discrimination. Nat Commun, 10, 2019
6LAZ	the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1 分子名称: (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-hydroxyethyl)amino]-2-azaniumyl-butanoate, MAGNESIUM ION, RNA (55-MER), ... 著者 Ren, A, Sun, A. 登録日 2019-11-13 公開日 2020-01-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 SAM-VI riboswitch structure and signature for ligand discrimination. Nat Commun, 10, 2019
6LAS	the wildtype SAM-VI riboswitch bound to SAM 分子名称: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A 著者 Ren, A, Sun, A. 登録日 2019-11-13 公開日 2020-01-01 実験手法 X-RAY DIFFRACTION (2.708 Å) 主引用文献 SAM-VI riboswitch structure and signature for ligand discrimination. Nat Commun, 10, 2019
6OD9	Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser 分子名称: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, CESIUM ION, MAGNESIUM ION, ... 著者 Jones, C.P, Tran, B, Ferre-D'Amare, A.R. 登録日 2019-03-26 公開日 2019-07-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (4.102 Å) 主引用文献 Co-crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X-ray free-electron laser. Acta Crystallogr.,Sect.F, 75, 2019

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