Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3TYI
DownloadVisualize
BU of 3tyi by Molmil
Crystal Structure of Cytochrome c - p-Sulfonatocalix[4]arene Complexes
分子名称: 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid, Cytochrome c iso-1, PROTOPORPHYRIN IX CONTAINING FE
著者Mc Govern, R.E, Fernandes, H, Khan, A.R, Crowley, P.B.
登録日2011-09-26
公開日2012-05-02
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.399 Å)
主引用文献Protein camouflage in cytochrome c-calixarene complexes.
Nat Chem, 4, 2012
7PZN
DownloadVisualize
BU of 7pzn by Molmil
wt HBc capsid like particles in complex with inhibitory peptide SLLGRM and Triton X-100
分子名称: Capsid protein, FRAGMENT OF TRITON X-100, SLLGRM, ...
著者Makbul, C, Boettcher, B.
登録日2021-10-12
公開日2021-12-08
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Binding of a Pocket Factor to Hepatitis B Virus Capsids Changes the Rotamer Conformation of Phenylalanine 97.
Viruses, 13, 2021
7RJF
DownloadVisualize
BU of 7rjf by Molmil
MOPD-1 mutant-L47W
分子名称: MALONATE ION, ZINC ION, [L47W]MOPD-1
著者Huawu, Y, Conan, K.W, Gordon, J.K, Brett, M.C, Yen-Hua, H, David, J.C.
登録日2021-07-20
公開日2021-10-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Rational Design of Potent Peptide Inhibitors of the PD-1:PD-L1 Interaction for Cancer Immunotherapy.
J.Am.Chem.Soc., 143, 2021
7PCU
DownloadVisualize
BU of 7pcu by Molmil
Crystal structure of YTHDF1 YTH domain in complex with ebselen
分子名称: N-phenyl-2-selanylbenzamide, YTH domain-containing family protein 1
著者Dalle Vedove, A, Cazzanelli, G, Quattrone, A, Provenzani, A, Lolli, G.
登録日2021-08-04
公開日2022-12-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Small-Molecule Ebselen Binds to YTHDF Proteins Interfering with the Recognition of N 6 -Methyladenosine-Modified RNAs.
Acs Pharmacol Transl Sci, 5, 2022
3U8X
DownloadVisualize
BU of 3u8x by Molmil
Crystal Structure of a chimera containing the N-terminal domain (residues 8-29) of drosophila Ciboulot and the C-terminal domain (residues 18-44) of bovine Thymosin-beta4, bound to G-actin-ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Renault, L, Husson, C, Carlier, M.F, Didry, D.
登録日2011-10-17
公開日2012-01-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献How a single residue in individual beta-thymosin/WH2 domains controls their functions in actin assembly
Embo J., 31, 2012
7OX6
DownloadVisualize
BU of 7ox6 by Molmil
Solution structure of human interleukin-9
分子名称: Interleukin-9
著者Savvides, S.N, Tripsianes, K, De Vos, T, Papageorgiou, A, Evangelidis, T.
登録日2021-06-22
公開日2022-12-28
最終更新日2023-01-11
実験手法SOLUTION NMR
主引用文献Structural basis for the mechanism and antagonism of receptor signaling mediated by Interleukin-9 (IL-9)
Biorxiv, 2022
7OYN
DownloadVisualize
BU of 7oyn by Molmil
Carbonic anhydrase II in complex with Hit3 (MH57)
分子名称: Carbonic anhydrase 2, Hit3 (MH57), ZINC ION
著者Kugler, M, Brynda, J, Rezacova, P.
登録日2021-06-24
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYP
DownloadVisualize
BU of 7oyp by Molmil
Carbonic anhydrase II in complex with Hit3-t1 (MH172)
分子名称: (2S)-3-oxidanyl-2-[2-[(4-sulfamoylphenyl)methoxyamino]ethanoylamino]propanamide, 4-methylbenzenesulfonamide, Carbonic anhydrase 2, ...
著者Kugler, M, Brynda, J, Rezacova, P.
登録日2021-06-24
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYR
DownloadVisualize
BU of 7oyr by Molmil
Carbonic anhydrase II in complex with Hit3-t4 (MH181)
分子名称: Carbonic anhydrase 2, Hit3-t4 (MH181), ZINC ION
著者Kugler, M, Brynda, J, Rezacova, P.
登録日2021-06-24
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYQ
DownloadVisualize
BU of 7oyq by Molmil
Carbonic anhydrase II in complex with Hit3-t2 (MH174)
分子名称: Carbonic anhydrase 2, Hit3-t2 (MH174), ZINC ION
著者Kugler, M, Brynda, J, Rezacova, P.
登録日2021-06-24
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYM
DownloadVisualize
BU of 7oym by Molmil
Carbonic anhydrase II in complex with Hit2 (MH65)
分子名称: Carbonic anhydrase 2, Hit2 (MH65), ZINC ION
著者Kugler, M, Brynda, J, Rezacova, P.
登録日2021-06-24
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
7OYO
DownloadVisualize
BU of 7oyo by Molmil
Carbonic anhydrase II in complex with Hit4 (MH70)
分子名称: Carbonic anhydrase 2, DIMETHYL SULFOXIDE, ZINC ION, ...
著者Kugler, M, Brynda, J, Rezacova, P.
登録日2021-06-24
公開日2023-01-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献Identification of specific carbonic anhydrase inhibitors via in situ click chemistry, phage-display and synthetic peptide libraries: comparison of the methods and structural study.
Rsc Med Chem, 14, 2023
3RER
DownloadVisualize
BU of 3rer by Molmil
Crystal structure of E. coli Hfq in complex with AU6A RNA and ADP
分子名称: 5'-R(*AP*UP*UP*UP*UP*UP*UP*A)-3', ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Wang, W.W, Wu, J.H, Shi, Y.Y.
登録日2011-04-05
公開日2011-10-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Cooperation of Escherichia coli Hfq hexamers in DsrA binding.
Genes Dev., 25, 2011
3RI4
DownloadVisualize
BU of 3ri4 by Molmil
Ets1 cooperative binding to widely separated sites on promoter DNA
分子名称: Isoform Ets-1 p27 of Protein C-ets-1, TCR alpha promoter DNA
著者Babayeva, N.D, Mino, K, Tahirov, T.H.
登録日2011-04-12
公開日2012-04-04
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis of ets1 cooperative binding to widely separated sites on promoter DNA.
Plos One, 7, 2012
3R32
DownloadVisualize
BU of 3r32 by Molmil
Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase mutant E73A complexed with 4-hydroxyphenacyl CoA
分子名称: 4-HYDROXYPHENACYL COENZYME A, 4-hydroxybenzoyl-CoA thioesterase
著者Holden, H.M, Thoden, J.B, Song, F, Zhuang, Z, Trujillo, M, Dunaway-Mariano, D.
登録日2011-03-15
公開日2012-03-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU.
Biochemistry, 51, 2012
3R3A
DownloadVisualize
BU of 3r3a by Molmil
Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase mutant Q58A complexed with 4-hydroxybenzoic acid and CoA
分子名称: 4-hydroxybenzoyl-CoA thioesterase, COENZYME A, P-HYDROXYBENZOIC ACID
著者Holden, H.M, Thoden, J.B, Song, F, Zhuang, Z, Trujillo, M, Dunaway-Mariano, D.
登録日2011-03-15
公開日2012-03-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU.
Biochemistry, 51, 2012
7YK2
DownloadVisualize
BU of 7yk2 by Molmil
Cryo-EM structure of Apo-alpha-syn fibril
分子名称: Alpha-synuclein
著者Xu, Q.H, Xia, W.C, Tao, Y.Q, Liu, C.
登録日2022-07-21
公開日2023-03-22
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Conformational Dynamics of an alpha-Synuclein Fibril upon Receptor Binding Revealed by Insensitive Nuclei Enhanced by Polarization Transfer-Based Solid-State Nuclear Magnetic Resonance and Cryo-Electron Microscopy.
J.Am.Chem.Soc., 145, 2023
7XTJ
DownloadVisualize
BU of 7xtj by Molmil
Crystal structure of E88A mutant of GH3 beta-xylosidase from Aspergillus niger (AnBX)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
著者Kaenying, W, Kongsaeree, P.T, Tagami, T.
登録日2022-05-17
公開日2023-03-15
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and identification of amino acid residues for catalysis and binding of GH3 AnBX beta-xylosidase from Aspergillus niger.
Appl.Microbiol.Biotechnol., 107, 2023
7YK8
DownloadVisualize
BU of 7yk8 by Molmil
Cryo-EM structure of dLAG3-alpha-syn fibril
分子名称: Alpha-synuclein
著者Xu, Q.H, Xia, W.C, Tao, Y.Q, Liu, C.
登録日2022-07-22
公開日2023-03-22
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Conformational Dynamics of an alpha-Synuclein Fibril upon Receptor Binding Revealed by Insensitive Nuclei Enhanced by Polarization Transfer-Based Solid-State Nuclear Magnetic Resonance and Cryo-Electron Microscopy.
J.Am.Chem.Soc., 145, 2023
3R68
DownloadVisualize
BU of 3r68 by Molmil
Molecular Analysis of the PDZ3 domain of PDZK1
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
著者Kocher, O, Birrane, G, Krieger, M.
登録日2011-03-21
公開日2011-05-18
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Identification of the PDZ3 Domain of the Adaptor Protein PDZK1 as a Second, Physiologically Functional Binding Site for the C Terminus of the High Density Lipoprotein Receptor Scavenger Receptor Class B Type I.
J.Biol.Chem., 286, 2011
7Q2U
DownloadVisualize
BU of 7q2u by Molmil
The crystal structure of the HINT1 Q62A mutant.
分子名称: CACODYLATE ION, HEXAETHYLENE GLYCOL, Histidine triad nucleotide-binding protein 1, ...
著者Dolot, R.M, Strom, A.M, Wagner, C.R.
登録日2021-10-26
公開日2021-11-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Dynamic Long-Range Interactions Influence Substrate Binding and Catalysis by Human Histidine Triad Nucleotide-Binding Proteins (HINTs), Key Regulators of Multiple Cellular Processes and Activators of Antiviral ProTides.
Biochemistry, 61, 2022
7R8R
DownloadVisualize
BU of 7r8r by Molmil
Physachenolide C with Bromodomain (BRD3-BD1)
分子名称: Bromodomain-containing protein 3, Physachenolide C
著者Fromme, R, Sivinski, J, Zerio, C, Gunatilaka, A.A.L, Chapman, E.
登録日2021-06-27
公開日2022-09-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Physachenolide C is a Potent, Selective BET Inhibitor.
J.Med.Chem., 66, 2023
3RFX
DownloadVisualize
BU of 3rfx by Molmil
Crystal structure of uronate dehydrogenase from Agrobacterium tumefaciens, Y136A mutant complexed with NAD
分子名称: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PHOSPHATE ION, Uronate dehydrogenase
著者Parkkinen, T, Rouvinen, J.
登録日2011-04-07
公開日2011-06-15
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens.
J.Biol.Chem., 286, 2011
7R1Q
DownloadVisualize
BU of 7r1q by Molmil
X-ray structure of the adduct formed upon reaction of the gold(I) N-heterocyclic carbene complex Au2 with lysozyme
分子名称: DIMETHYL SULFOXIDE, GOLD ION, Lysozyme
著者Merlino, A, Ferraro, G.
登録日2022-02-03
公開日2022-07-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Halo complexes of gold(I) containing glycoconjugate carbene ligands: synthesis, characterization, cytotoxicity and interaction with proteins and DNA model systems.
Dalton Trans, 51, 2022
7R1P
DownloadVisualize
BU of 7r1p by Molmil
X-ray structure of the adduct formed upon reaction of the gold(I) N-heterocyclic carbene complex Au1 with RNase A
分子名称: GOLD ION, Ribonuclease pancreatic, SULFATE ION
著者Merlino, A, Ferraro, G.
登録日2022-02-03
公開日2022-07-13
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Halo complexes of gold(I) containing glycoconjugate carbene ligands: synthesis, characterization, cytotoxicity and interaction with proteins and DNA model systems.
Dalton Trans, 51, 2022

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon