PDB: 20505 件ウェブページステータス検索Chemie searchBIRD

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7Q65	Cryo-em structure of the Nup98 fibril polymorph 2 分子名称: Nuclear pore complex protein Nup98 著者 Ibanez de Opakua, A, Geraets, J.A, Frieg, B, Dienemann, C, Savastano, A, Rankovic, M, Cima-Omori, M.-S, Schroeder, G.F, Zweckstetter, M. 登録日 2021-11-05 公開日 2022-10-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.32 Å) 主引用文献 Molecular interactions of FG nucleoporin repeats at high resolution. Nat.Chem., 14, 2022
7Q67	Cryo-em structure of the Nup98 fibril polymorph 4 分子名称: Nuclear pore complex protein Nup98 著者 Ibanez de Opakua, A, Geraets, J.A, Frieg, B, Dienemann, C, Savastano, A, Rankovic, M, Cima-Omori, M.-S, Schroeder, G.F, Zweckstetter, M. 登録日 2021-11-05 公開日 2022-10-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.37 Å) 主引用文献 Molecular interactions of FG nucleoporin repeats at high resolution. Nat.Chem., 14, 2022
3R34	Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase mutant E73D complexed with CoA 分子名称: 1,2-ETHANEDIOL, 4-hydroxybenzoyl-CoA thioesterase, COENZYME A 著者 Holden, H.M, Thoden, J.B, Song, F, Zhuang, Z, Trujillo, M, Dunaway-Mariano, D. 登録日 2011-03-15 公開日 2012-03-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU. Biochemistry, 51, 2012
3R3F	Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase mutant T77A complexed with 4-hydroxyphenacyl CoA 分子名称: 4-HYDROXYPHENACYL COENZYME A, 4-hydroxybenzoyl-CoA thioesterase 著者 Holden, H.M, Thoden, J.B, Song, F, Zhuang, Z, Trujillo, M, Dunaway-Mariano, D. 登録日 2011-03-15 公開日 2012-03-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU. Biochemistry, 51, 2012
7Q66	Cryo-em structure of the Nup98 fibril polymorph 3 分子名称: Nuclear pore complex protein Nup98 著者 Ibanez de Opakua, A, Geraets, J.A, Frieg, B, Dienemann, C, Savastano, A, Rankovic, M, Cima-Omori, M.-S, Schroeder, G.F, Zweckstetter, M. 登録日 2021-11-05 公開日 2022-10-12 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 Molecular interactions of FG nucleoporin repeats at high resolution. Nat.Chem., 14, 2022
7PZO	mite allergen Der p 3 from Dermatophagoides pteronyssinus 分子名称: SULFATE ION, mite allergen Der p 3 著者 Timofeev, V.I, Shevtsov, M.B, Abramchik, Y.A, Mikheeva, O.O, Kostromina, M.A, Lykoshin, D.D, Zayats, E.A, Zavriev, S.K, Esipov, R.S, Kuranova, I.P. 登録日 2021-10-13 公開日 2022-11-02 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold. J.Biomol.Struct.Dyn., 36, 2018
7NY0	Solution structure of Boskar4; a de novo designed G-CSF agonist 分子名称: Boskar4 著者 ElGamacy, M, Coles, M. 登録日 2021-03-19 公開日 2021-10-06 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 A topological refactoring design strategy yields highly stable granulopoietic proteins. Nat Commun, 13, 2022
7PO7	Phosphoglycolate phosphatase from Mus musculus 分子名称: ACETATE ION, CALCIUM ION, GLYCEROL, ... 著者 Schloetzer, J, Schindelin, H, Fratz, S. 登録日 2021-09-08 公開日 2022-12-21 最終更新日 2024-07-03 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 Glycolytic flux control by drugging phosphoglycolate phosphatase. Nat Commun, 13, 2022
7POE	Phosphoglycolate Phosphatase with Inhibitor CP1 分子名称: 2-[[4-[4-[(2-carboxyphenyl)carbamoyl]phenoxy]phenyl]carbonylamino]benzoic acid, GLYCEROL, Glycerol-3-phosphate phosphatase, ... 著者 Schloetzer, J, Fratz, S, Schindelin, H. 登録日 2021-09-08 公開日 2022-12-21 最終更新日 2024-07-03 実験手法 X-RAY DIFFRACTION (3.16 Å) 主引用文献 Glycolytic flux control by drugging phosphoglycolate phosphatase. Nat Commun, 13, 2022
3QYO	Sensitivity of receptor internal motions to ligand binding affinity and kinetic off-rate 分子名称: CALCIUM ION, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... 著者 Collins, E.J, Lee, A.L, Carroll, M.J, Mauldin, R.V, Gromova, A.V, Singleton, S.F. 登録日 2011-03-03 公開日 2012-01-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 Evidence for dynamics in proteins as a mechanism for ligand dissociation. Nat.Chem.Biol., 8, 2012
7QG7	SARS-CoV-2 macrodomain Nsp3b bound to the remdesivir nucleoside GS-441524 分子名称: (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile, 1,2-ETHANEDIOL, Papain-like protease nsp3 著者 Wollenhaupt, J, Linhard, V, Sreeramulu, S, Weiss, M.S, Schwalbe, H. 登録日 2021-12-07 公開日 2021-12-15 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Binding Adaptation of GS-441524 Diversifies Macro Domains and Downregulates SARS-CoV-2 de-MARylation Capacity. J.Mol.Biol., 434, 2022
3R35	Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase mutant E73D complexed with 4-hydroxyphenacyl CoA 分子名称: 4-HYDROXYPHENACYL COENZYME A, 4-hydroxybenzoyl-CoA thioesterase 著者 Holden, H.M, Thoden, J.B, Song, F, Zhuang, Z, Trujillo, M, Dunaway-Mariano, D. 登録日 2011-03-15 公開日 2012-03-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The Catalytic Mechanism of the Hotdog-fold Enzyme Superfamily 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. Strain SU. Biochemistry, 51, 2012
7Q9S	Crystal structure of PDE6D KRas peptide complex with Compound-1 分子名称: 1,2-ETHANEDIOL, 2-methyl-3-(1~{H}-pyrazol-5-yl)imidazo[1,2-a]pyridine, DIMETHYL SULFOXIDE, ... 著者 Yelland, T, Ismail, S. 登録日 2021-11-14 公開日 2022-01-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Stabilization of the RAS:PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling. J.Med.Chem., 65, 2022
3TGI	WILD-TYPE RAT ANIONIC TRYPSIN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR (BPTI) 分子名称: BOVINE PANCREATIC TRYPSIN INHIBITOR, CALCIUM ION, SULFATE ION, ... 著者 Pasternak, A, Ringe, D, Hedstrom, L. 登録日 1998-07-15 公開日 1998-12-23 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Comparison of Anionic and Cationic Trypsinogens: The Anionic Activation Domain is More Flexible in Solution and Differs in its Mode of Bpti Binding in the Crystal Structure Protein Sci., 8, 1999
7QJK	Crystal structure of PDE6D in complex with Compound-2 分子名称: 1,2-ETHANEDIOL, N-(phenylmethyl)pyridin-2-amine, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, ... 著者 Yelland, T, Ismail, S. 登録日 2021-12-16 公開日 2022-01-26 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Stabilization of the RAS:PDE6D Complex Is a Novel Strategy to Inhibit RAS Signaling. J.Med.Chem., 65, 2022
7NT4	X-ray structure of SCoV2-PLpro in complex with small molecule inhibitor 分子名称: 1,2-ETHANEDIOL, Non-structural protein 3, PROFLAVIN, ... 著者 Napolitano, V, Mourao, A, Bostock, M, Matsuda, A, Czarna, A, Popowicz, G.M. 登録日 2021-03-09 公開日 2022-02-02 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Acriflavine, a clinically approved drug, inhibits SARS-CoV-2 and other betacoronaviruses. Cell Chem Biol, 29, 2022
3TGJ	S195A TRYPSINOGEN COMPLEXED WITH BOVINE PANCREATIC TRYPSIN INHIBITOR (BPTI) 分子名称: BOVINE PANCREATIC TRYPSIN INHIBITOR, CALCIUM ION, SULFATE ION, ... 著者 Pasternak, A, Ringe, D, Hedstrom, L. 登録日 1998-07-16 公開日 1998-12-23 最終更新日 2021-11-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Comparison of Anionic and Cationic Trypsinogens: The Anionic Activation Domain is More Flexible in Solution and Differs in its Mode of Bpti Binding in the Crystal Structure Protein Sci., 8, 1999
7NTQ	Crystal structure of the SARS-CoV-2 Main Protease complexed with N-(pyridin-3-ylmethyl)thioformamide 分子名称: 3C-like proteinase, DIMETHYL SULFOXIDE, FORMIC ACID, ... 著者 Dupre, E, Villeret, V, Hanoulle, X. 登録日 2021-03-10 公開日 2022-03-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.495 Å) 主引用文献 Novel dithiocarbamates selectively inhibit 3CL protease of SARS-CoV-2 and other coronaviruses. Eur.J.Med.Chem., 250, 2023
3RFV	Crystal structure of Uronate dehydrogenase from Agrobacterium tumefaciens complexed with NADH and product 分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, D-galactaro-1,5-lactone, PHOSPHATE ION, ... 著者 Parkkinen, T, Rouvinen, J. 登録日 2011-04-07 公開日 2011-06-15 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of Uronate Dehydrogenase from Agrobacterium tumefaciens. J.Biol.Chem., 286, 2011
7QDW	Solution structure of the complex between plasmodial ZNHIT3 and NUFIP1 proteins 分子名称: NUFIP1 domain-containing protein, Zinc finger protein, putative 著者 Chagot, M.E, Quinternet, M. 登録日 2021-11-30 公開日 2022-03-30 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural Analysis of the Plasmodial Proteins ZNHIT3 and NUFIP1 Provides Insights into the Selectivity of a Conserved Interaction. Biochemistry, 61, 2022
3RS3	H-Ras soaked in neat hexane: 1 of 10 in MSCS set 分子名称: CALCIUM ION, GTPase HRas, HEXANE, ... 著者 Mattos, C, Buhrman, G, Kearney, B. 登録日 2011-05-02 公開日 2011-09-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Analysis of Binding Site Hot Spots on the Surface of Ras GTPase. J.Mol.Biol., 413, 2011
3RSL	H-Ras soaked in 90% R,S,R-bisfuranol: one of 10 in MSCS set 分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-ol, CALCIUM ION, GTPase HRas, ... 著者 Mattos, C, Buhrman, G, Kearney, B. 登録日 2011-05-02 公開日 2011-09-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Analysis of Binding Site Hot Spots on the Surface of Ras GTPase. J.Mol.Biol., 413, 2011
3R85	Crystal structure of human SOUL BH3 domain in complex with Bcl-xL 分子名称: Bcl-2-like protein 1, Heme-binding protein 2, SULFATE ION 著者 Ambrosi, E.K, Capaldi, S, Bovi, M, Saccomani, G, Perduca, M, Monaco, H.L. 登録日 2011-03-23 公開日 2011-06-29 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural changes in the BH3 domain of SOUL protein upon interaction with the anti-apoptotic protein Bcl-xL. Biochem.J., 438, 2011
3RDJ	Rat PKC C2 domain Apo 分子名称: Protein kinase C alpha type 著者 Li, P. 登録日 2011-04-01 公開日 2011-09-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Pb2+ as modulator of protein-membrane interactions. J.Am.Chem.Soc., 133, 2011
3R8K	Crystal structure of human SOUL protein (hexagonal form) 分子名称: Heme-binding protein 2 著者 Ambrosi, E.K, Capaldi, S, Bovi, M, Saccomani, G, Perduca, M, Monaco, H.L. 登録日 2011-03-24 公開日 2011-06-29 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Structural changes in the BH3 domain of SOUL protein upon interaction with the anti-apoptotic protein Bcl-xL. Biochem.J., 438, 2011

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