PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2M14	NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and Rad4 分子名称: DNA repair protein RAD4, RNA polymerase II transcription factor B subunit 1 著者 Lafrance-Vanasse, J, Arseneault, G, Cappadocia, L, Legault, P, Omichinski, J.G. 登録日 2012-11-16 公開日 2013-01-23 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural and functional evidence that Rad4 competes with Rad2 for binding to the Tfb1 subunit of TFIIH in NER. Nucleic Acids Res., 41, 2013
4YS3	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis 分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... 著者 Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B. 登録日 2015-03-16 公開日 2015-10-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Mol.Cell.Biol., 35, 2015
2ZQE	Crystal structure of the Smr domain of Thermus thermophilus MutS2 分子名称: MutS2 protein 著者 Fukui, K, Kitamura, Y, Nakagawa, N, Masui, R, Kuramitsu, S. 登録日 2008-08-08 公開日 2008-09-30 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination suppression J.Biol.Chem., 283, 2008
8PP7	human RYBP-PRC1 bound to mononucleosome 分子名称: DNA (215-mer), E3 ubiquitin-protein ligase RING2, Histone H2A, ... 著者 Ciapponi, M, Benda, C, Mueller, J. 登録日 2023-07-06 公開日 2024-03-27 最終更新日 2024-07-31 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Structural basis of the histone ubiquitination read-write mechanism of RYBP-PRC1. Nat.Struct.Mol.Biol., 31, 2024
6NEO	Crystal structure of PprA filament from Deinococcus radiodurans 分子名称: DNA repair protein PprA 著者 Szabla, R, Junop, M.S, Rok, M. 登録日 2018-12-18 公開日 2019-02-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (5.94 Å) 主引用文献 Crystal structure of PprA filament from Deinococcus radiodurans To Be Published
4Z66	Nucleosome disassembly by RSC and SWI/SNF is enhanced by H3 acetylation near the nucleosome dyad axis 分子名称: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... 著者 Dechassa, M.L, Luger, K, Chatterjee, N, North, J.A, Manohar, M, Prasad, R, Ottessen, J.J, Poirier, M.G, Bartholomew, B. 登録日 2015-04-03 公開日 2015-10-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF. Mol.Cell.Biol., 35, 2015
6RWL	SIVrcm intasome 分子名称: DNA (5'-D(*AP*AP*CP*TP*GP*GP*TP*AP*GP*AP*GP*AP*TP*TP*TP*TP*TP*CP*TP*TP*AP*GP*C)-3'), DNA (5'-D(P*GP*CP*TP*AP*AP*GP*AP*AP*AP*AP*AP*TP*CP*TP*CP*TP*AP*CP*CP*A)-3'), Pol protein, ... 著者 Cherepanov, P, Nans, A, Cook, N. 登録日 2019-06-05 公開日 2020-02-05 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Structural basis of second-generation HIV integrase inhibitor action and viral resistance. Science, 367, 2020
1AM9	HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER 分子名称: DNA (5'-D(*CP*AP*TP*GP*AP*GP*AP*TP*CP*AP*CP*CP*CP*CP*AP*CP*T P*GP*CP*AP*A)-3'), DNA (5'-D(*TP*TP*GP*CP*AP*GP*TP*GP*GP*GP*GP*TP*GP*AP*TP*CP*T )-3'), MAGNESIUM ION, ... 著者 Parraga, A, Burley, S.K. 登録日 1997-06-25 公開日 1998-07-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure, 6, 1998
1HHT	RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template 分子名称: DNA (5'-(*TP*TP*TP*CP*C)-3'), MANGANESE (II) ION, P2 PROTEIN 著者 Grimes, J.M, Butcher, S.J, Makeyev, E.V, Bamford, D.H, Stuart, D.I. 登録日 2000-12-28 公開日 2001-03-27 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 A Mechanism for Initiating RNA-Dependent RNA Polymerization Nature, 410, 2001
8T9C	Zophobas morio black wasting virus strain UT-morio virion structure 分子名称: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*A)-3'), DNA (5'-D(P*CP*G)-3'), DNA (5'-D(P*CP*GP*A)-3'), ... 著者 Penzes, J.J, Kaelber, J.T. 登録日 2023-06-23 公開日 2023-08-23 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles To Be Published
8TJE	Zophobas morio black wasting virus strain OR-molitor virion structure 分子名称: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*AP*A)-3'), DNA (5'-D(P*CP*G)-3'), DNA (5'-D(P*TP*CP*GP*AP*A)-3'), ... 著者 Penzes, J.J, Kaelber, J.T. 登録日 2023-07-20 公開日 2023-08-23 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles To Be Published
5XM0	The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4 分子名称: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Taguchi, H, Horikoshi, N, Kurumizaka, H. 登録日 2017-05-12 公開日 2018-03-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.874 Å) 主引用文献 Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Nat Commun, 9, 2018
8EUJ	Class2 of the INO80-Nucleosome complex 分子名称: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Wu, H, Munoz, E, Gourdet, M, Narlikar, G, Cheng, Y.F. 登録日 2022-10-18 公開日 2023-07-12 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility. Science, 381, 2023
8EUE	Class1 of the INO80-Nucleosome complex 分子名称: DNA (147-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Wu, H, Munoz, E, Gourdet, M, Narlikar, G, Cheng, Y.F. 登録日 2022-10-18 公開日 2023-07-12 最終更新日 2024-04-03 実験手法 ELECTRON MICROSCOPY (3.48 Å) 主引用文献 Reorientation of INO80 on hexasomes reveals basis for mechanistic versatility. Science, 381, 2023
8T9X	Zophobas morio black wasting virus strain NJ2-molitor virion structure 分子名称: DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*AP*A)-3'), DNA (5'-D(P*CP*GP*A)-3'), DNA (5'-D(P*TP*CP*GP*AP*A)-3'), ... 著者 Penzes, J.J, Kaelber, J.T. 登録日 2023-06-26 公開日 2024-02-21 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (2 Å) 主引用文献 Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles To Be Published
5XM1	The mouse nucleosome structure containing H2A, H2B type3-A, H3mm7, and H4 分子名称: DNA (146-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Taguchi, H, Horikoshi, N, Kurumizaka, H. 登録日 2017-05-12 公開日 2018-03-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration. Nat Commun, 9, 2018
7EG6	Snf5 Finger Helix bound to the nucleosome 分子名称: DNA (235-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Chen, Z.C, Chen, K.J, He, Z.Y, Ye, Y.P. 登録日 2021-03-24 公開日 2022-01-12 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure of the SWI/SNF complex bound to the nucleosome and insights into the functional modularity. Cell Discov, 7, 2021
3TBI	Crystal structure of T4 gp33 bound to E. coli RNAP beta-flap domain 分子名称: DNA-directed RNA polymerase subunit beta, RNA polymerase-associated protein Gp33 著者 Twist, K.A.F, Campbell, E.A, Darst, S.A. 登録日 2011-08-06 公開日 2011-11-23 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of T4 gp33 bound to E. coli RNAP beta-flap domain To be Published
8HD5	The crystal structure of Hu protein in Staphylococcus aureus 分子名称: DNA-binding protein HU 著者 Liu, Y.H, Chen, H, Li, Y, Liu, B. 登録日 2022-11-03 公開日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.14 Å) 主引用文献 The crystal structure of Hu protein in Staphylococcus aureus To Be Published
8U17	The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-long bound to Pomalidomide 分子名称: DNA damage-binding protein 1, Protein cereblon, S-Pomalidomide, ... 著者 Clifton, M.C, Ma, X, Ornelas, E. 登録日 2023-08-30 公開日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural and biophysical comparisons of the pomalidomide- and CC-220-induced interactions of SALL4 with cereblon. Sci Rep, 13, 2023
4JXT	CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD 分子名称: DNA-directed RNA polymerase II subunit RPB1, Regulation of nuclear pre-mRNA domain-containing protein 1A, UNKNOWN ATOM OR ION 著者 Ni, Z, Xu, C, Tempel, W, El Bakkouri, M, Loppnau, P, Guo, X, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Min, J, Greenblatt, J.F, Structural Genomics Consortium (SGC) 登録日 2013-03-28 公開日 2013-11-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol., 21, 2014
7LCD	Crystal structure of human polymerase eta complexed with syn N7-acetophenoneguanine 分子名称: DNA (5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*AP*T*(T0P)P*CP*TP*CP*AP*CP*AP*CP*T)-3'), DNA polymerase eta 著者 Jung, H, Lee, S. 登録日 2021-01-10 公開日 2022-02-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Crystal structure of human polymerase eta complexed with syn N7-acetophenoneguanine To Be Published
1G60	Crystal Structure of Methyltransferase MboIIa (Moraxella bovis) 分子名称: Adenine-specific Methyltransferase MboIIA, S-ADENOSYLMETHIONINE, SODIUM ION 著者 Osipiuk, J, Walsh, M.A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2000-11-02 公開日 2002-05-01 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Crystal structure of MboIIA methyltransferase. Nucleic Acids Res., 31, 2003
3PWT	Crystal structure of mutant E.coli topoisomerase IA 分子名称: DNA topoisomerase, SULFATE ION 著者 Zhang, Z, Bokun, C, Tse-Dinh, Y.-C. 登録日 2010-12-08 公開日 2010-12-29 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of mutant E.coli topoisomerase IA To be Published
7Z42	Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 2B 分子名称: DNA-directed RNA polymerase II subunit RPB1, Polymerase acidic protein, Polymerase basic protein 2, ... 著者 Cusack, S, Drncova, P. 登録日 2022-03-03 公開日 2022-05-18 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.418 Å) 主引用文献 Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD. Plos Pathog., 18, 2022

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