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3PD2
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Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with seryl-3'-aminoadenosine
分子名称: SERINE-3'-AMINOADENOSINE, Threonyl-tRNA synthetase
著者Hussain, T, Kamarthapu, V, Kruparani, S.P, Sankaranarayanan, R.
登録日2010-10-22
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Mechanistic insights into cognate substrate discrimination during proofreading in translation
Proc.Natl.Acad.Sci.USA, 107, 2010
3PD5
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Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with an analog of threonyl-adenylate
分子名称: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE, GLYCEROL, Threonyl-tRNA synthetase
著者Hussain, T, Kamarthapu, V, Kruparani, S.P, Sankaranarayanan, R.
登録日2010-10-22
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Mechanistic insights into cognate substrate discrimination during proofreading in translation
Proc.Natl.Acad.Sci.USA, 2010
1HC8
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BU of 1hc8 by Molmil
CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
分子名称: 58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN, MAGNESIUM ION, OSMIUM ION, ...
著者Conn, G.L, Draper, D.E, Lattman, E.E, Gittis, A.G.
登録日2001-04-27
公開日2002-05-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A Compact RNA Tertiary Structure Contains a Buried Backbone-K+ Complex
J.Mol.Biol., 318, 2002
5E0L
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BU of 5e0l by Molmil
LC8 - Chica (415-424) Complex
分子名称: Dynein light chain 1, cytoplasmic, Protein Chica peptide, ...
著者Clark, S.A, Barbar, E.B, Karplus, P.A.
登録日2015-09-29
公開日2015-12-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献The Anchored Flexibility Model in LC8 Motif Recognition: Insights from the Chica Complex.
Biochemistry, 55, 2016
4B1T
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BU of 4b1t by Molmil
Structure of the factor Xa-like trypsin variant triple-Ala (TA) in complex with eglin C
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CATIONIC TRYPSIN, ...
著者Menzel, A, Neumann, P, Stubbs, M.T.
登録日2012-07-12
公開日2012-08-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Thermodynamic signatures in macromolecular interactions involving conformational flexibility.
Biol.Chem., 395, 2014
3MOS
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BU of 3mos by Molmil
The structure of human Transketolase
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, SODIUM ION, ...
著者Parthier, C, Tittmann, K.
登録日2010-04-23
公開日2010-07-28
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The crystal structure of human transketolase and new insights into its mode of action.
J.Biol.Chem., 285, 2010
4A1U
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BU of 4a1u by Molmil
Crystal structure of alpha-beta-foldamer 2c in complex with Bcl-xL
分子名称: ALPHA-BETA-FOLDAMER 2C, BCL-2-LIKE PROTEIN 1, CHLORIDE ION, ...
著者Boersma, M.D, Haase, H.S, Kaufman, K.J, Horne, W.S, Lee, E.F, Clarke, O.B, Smith, B.J, Colman, P.M, Gellman, S.H, Fairlie, W.D.
登録日2011-09-20
公開日2011-12-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Evaluation of Diverse Alpha/Beta-Backbone Patterns for Functional Alpha-Helix Mimicry: Analogues of the Bim Bh3 Domain.
J.Am.Chem.Soc., 134, 2012
3ZZY
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BU of 3zzy by Molmil
Crystal structure of a Raver1 PRI3 peptide in complex with polypyrimidine tract binding protein RRM2
分子名称: POLYPYRIMIDINE TRACT-BINDING PROTEIN 1, RIBONUCLEOPROTEIN PTB-BINDING 1
著者Joshi, A, Kotik-Kogan, O, Curry, S.
登録日2011-09-06
公開日2011-12-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystallographic Analysis of Polypyrimidine Tract-Binding Protein-Raver1 Interactions Involved in Regulation of Alternative Splicing.
Structure, 19, 2011
4B3Q
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Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface
分子名称: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, P51 RT, PRIMER DNA, ...
著者Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W.
登録日2012-07-25
公開日2013-01-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (5 Å)
主引用文献Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation
Nat.Struct.Mol.Biol., 20, 2013
3ZZZ
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Crystal structure of a Raver1 PRI4 peptide in complex with polypyrimidine tract binding protein RRM2
分子名称: IODIDE ION, POLYPYRIMIDINE TRACT-BINDING PROTEIN 1, RIBONUCLEOPROTEIN PTB-BINDING 1
著者Joshi, A, Kotik-Kogan, O, Curry, S.
登録日2011-09-06
公開日2011-12-28
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystallographic Analysis of Polypyrimidine Tract-Binding Protein-Raver1 Interactions Involved in Regulation of Alternative Splicing.
Structure, 19, 2011
4B2B
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BU of 4b2b by Molmil
Structure of the factor Xa-like trypsin variant triple-Ala (TGPA) in complex with eglin C
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CATIONIC TRYPSIN, ...
著者Menzel, A, Neumann, P, Stubbs, M.T.
登録日2012-07-13
公開日2012-08-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Thermodynamic signatures in macromolecular interactions involving conformational flexibility.
Biol.Chem., 395, 2014
4B3P
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BU of 4b3p by Molmil
Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface
分子名称: DNA, P51 RT, REVERSE TRANSCRIPTASE/RIBONUCLEASE H, ...
著者Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W.
登録日2012-07-25
公開日2013-01-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (4.839 Å)
主引用文献Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation
Nat.Struct.Mol.Biol., 20, 2013
4B3O
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BU of 4b3o by Molmil
Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface
分子名称: (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE, 5'-D(*CP*GP*TP*AP*TP*GP*CP*CP*TP*AP*TP*AP*GP*TP *TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3', 5'-R(*AP*UP*GP*AP*3DRP*GP*GP*CP*CP*AP*CP*AP*AP*UP*AP *AP*CP*UP*AP*UP*AP*GP*GP*CP*AP*UP*A)-3', ...
著者Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W.
登録日2012-07-25
公開日2013-01-16
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation
Nat.Struct.Mol.Biol., 20, 2013
4B2C
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BU of 4b2c by Molmil
Structure of the factor Xa-like trypsin variant triple-Ala (TPA) in complex with eglin C
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CATIONIC TRYPSIN, ...
著者Menzel, A, Neumann, P, Stubbs, M.T.
登録日2012-07-13
公開日2012-08-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Thermodynamic signatures in macromolecular interactions involving conformational flexibility.
Biol.Chem., 395, 2014
4B2A
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BU of 4b2a by Molmil
Structure of the factor Xa-like trypsin variant triple-Ala (TGA) in complex with eglin C
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CATIONIC TRYPSIN, ...
著者Menzel, A, Neumann, P, Stubbs, M.T.
登録日2012-07-13
公開日2012-08-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Thermodynamic signatures in macromolecular interactions involving conformational flexibility.
Biol.Chem., 395, 2014
3Q9T
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BU of 3q9t by Molmil
Crystal structure analysis of formate oxidase
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, ...
著者Doubayashi, D, Ootake, T, Maeda, Y, Oki, M, Tokunaga, Y, Sakurai, A, Nagaosa, Y, Mikami, B, Uchida, H.
登録日2011-01-09
公開日2011-09-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Formate oxidase, an enzyme of the glucose-methanol-choline oxidoreductase family, has a His-Arg pair and 8-formyl-FAD at the catalytic site.
Biosci.Biotechnol.Biochem., 75, 2011
8V9M
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BU of 8v9m by Molmil
Human Ornithine Aminotransferase cocrystallized with its inhibitor, (R)-3-amino-5,5-difluorocyclohex-1-ene-1-carboxylic acid.
分子名称: 3-fluoro-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]benzoic acid, GLYCEROL, Ornithine aminotransferase, ...
著者Vargas, A.L, Devitt, A, Kaley, N, Silverman, R, Liu, D.
登録日2023-12-08
公開日2024-05-08
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Design, Synthesis, and Mechanistic Studies of ( R )-3-Amino-5,5-difluorocyclohex-1-ene-1-carboxylic Acid as an Inactivator of Human Ornithine Aminotransferase.
Acs Chem.Biol., 19, 2024
9ILB
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BU of 9ilb by Molmil
HUMAN INTERLEUKIN-1 BETA
分子名称: PROTEIN (HUMAN INTERLEUKIN-1 BETA)
著者Yu, B, Blaber, M, Gronenborn, A.M, Clore, G.M, Caspar, D.L.D.
登録日1998-10-22
公開日1999-01-06
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography.
Proc.Natl.Acad.Sci.USA, 96, 1999
8UN8
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BU of 8un8 by Molmil
Solution conformations of a 12-mer peptide bearing a natural N-hydrophobic triangle
分子名称: ACE-LEU-ASP-ALA-ALA-LEU-LEU-ALA-ALA-ALA-LYS-ALA-TRP-NH2 peptide
著者Mi, T.X, Burgess, K.
登録日2023-10-18
公開日2024-06-05
実験手法SOLUTION NMR
主引用文献Bioinformatics leading to conveniently accessible, helix enforcing, bicyclic ASX motif mimics (BAMMs).
Nat Commun, 15, 2024
8W2W
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BU of 8w2w by Molmil
Structure of transthyretin synthetic mutation A120L
分子名称: Transthyretin
著者Yang, K, Sun, X, Ferguson, J.A, Stanfield, R.L, Wright, P.E.
登録日2024-02-21
公開日2024-02-28
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献The mispacked F87 sidechain drives aggregation-promoting conformational fluctuations in transthyretin
To Be Published
8TLX
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BU of 8tlx by Molmil
Crystal structure of MBP and AF9 AHD fusion protein 3AQA in complex with peptidomimetic inhibitor 21a
分子名称: GLYCEROL, MBP and AF9 AHD fusion protein 3AQA, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Yang, Y, Nikolovska-Coleska, Z.
登録日2023-07-27
公開日2024-05-29
実験手法X-RAY DIFFRACTION (2.097 Å)
主引用文献Structural studies of intrinsically disordered MLL-fusion protein AF9 in complex with peptidomimetic inhibitors.
Protein Sci., 33, 2024
8VRG
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BU of 8vrg by Molmil
E. coli peptidyl-prolyl cis-trans isomerase containing delta1-monofluoro-leucines
分子名称: Peptidyl-prolyl cis-trans isomerase B
著者Frkic, R.L, Jackson, C.J.
登録日2024-01-22
公開日2024-05-22
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Conformational Preferences of the Non-Canonical Amino Acids (2 S ,4 S )-5-Fluoroleucine, (2 S ,4 R )-5-Fluoroleucine, and 5,5'-Difluoroleucine in a Protein.
Biochemistry, 63, 2024
8XTH
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Thanatin PM15Y in LPS
分子名称: Thanatin
著者Swaleeha, A, Bhattacharrya, S.
登録日2024-01-10
公開日2024-03-13
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Thanatin VF16QK in LPS
To Be Published
9EO0
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BU of 9eo0 by Molmil
Small-Molecule Inhibitors of Programmed Cell Death-1/Programmed Death-Ligand 1
分子名称: Programmed cell death 1 ligand 1, SULFATE ION, ~{N}-[3-[3-[[5-[(2-hydroxyethylamino)methyl]pyridin-2-yl]carbonylamino]-2-methyl-phenyl]-2-methyl-phenyl]-5-[[3-(methylsulfonylamino)propylamino]methyl]pyridine-2-carboxamide
著者Plewka, J, Hec, A, Sitar, T, Holak, T.
登録日2024-03-14
公開日2024-06-19
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Nonsymmetrically Substituted 1,1'-Biphenyl-Based Small Molecule Inhibitors of the PD-1/PD-L1 Interaction.
Acs Med.Chem.Lett., 15, 2024
8VRH
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BU of 8vrh by Molmil
E. coli peptidyl-prolyl cis-trans isomerase containing delta2-monofluoro-leucines
分子名称: 1,2-ETHANEDIOL, 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL, DI(HYDROXYETHYL)ETHER, ...
著者Frkic, R.L, Jackson, C.J.
登録日2024-01-22
公開日2024-05-22
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Conformational Preferences of the Non-Canonical Amino Acids (2 S ,4 S )-5-Fluoroleucine, (2 S ,4 R )-5-Fluoroleucine, and 5,5'-Difluoroleucine in a Protein.
Biochemistry, 63, 2024

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件を2024-07-17に公開中

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