PDB: 13413 件ウェブページステータス検索Chemie searchBIRD

---

8B8A	Multimerization domain of borna disease virus 1 phosphoprotein 分子名称: Phosphoprotein 著者 Tarbouriech, N, Legrand, P, Bourhis, J.M, Chenavier, F, Freslon, L, Kawasaki, J, Horie, M, Tomonaga, K, Bachiri, K, Coyaud, E, Gonzalez-Dunia, D, Ruigrok, R.W.H, Crepin, T. 登録日 2022-10-04 公開日 2022-11-23 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Borna Disease Virus 1 Phosphoprotein Forms a Tetramer and Interacts with Host Factors Involved in DNA Double-Strand Break Repair and mRNA Processing. Viruses, 14, 2022
5M1S	Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode 分子名称: DNA Primer Strand, DNA Template Strand, DNA polymerase III subunit alpha, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2016-10-10 公開日 2017-01-18 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (6.7 Å) 主引用文献 Self-correcting mismatches during high-fidelity DNA replication. Nat. Struct. Mol. Biol., 24, 2017
1ESH	THE SOLUTION STRUCTURE OF THE STEM LOOP C 5'AUA3' TRILOOP OF BROME MOSAIC VIRUS (+) STRAND RNA 分子名称: RNA (5'-R(*GP*GP*UP*GP*CP*AP*UP*AP*GP*CP*AP*CP*C)-3') 著者 Kim, C.-H, Kao, C.C, Tinoco Jr, I. 登録日 2000-04-10 公開日 2000-04-24 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 RNA motifs that determine specificity between a viral replicase and its promoter. Nat.Struct.Biol., 7, 2000
2N3Q	NMR structure of the II-III-VI three-way junction from the VS ribozyme 分子名称: RNA (62-MER) 著者 Bonneau, E, Girard, N, Lemieux, S, Legault, P. 登録日 2015-06-09 公開日 2015-07-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure. Rna, 21, 2015
1DUH	CRYSTAL STRUCTURE OF THE CONSERVED DOMAIN IV OF E. COLI 4.5S RNA 分子名称: 4.5S RNA DOMAIN IV, LUTETIUM (III) ION, MAGNESIUM ION, ... 著者 Jovine, L, Hainzl, T, Oubridge, C, Scott, W.G, Li, J, Sixma, T.K, Wonacott, A, Skarzynski, T, Nagai, K. 登録日 2000-01-17 公開日 2000-05-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of the ffh and EF-G binding sites in the conserved domain IV of Escherichia coli 4.5S RNA. Structure Fold.Des., 8, 2000
5IP9	Structure of RNA Polymerase II-TFIIF complex 分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... 著者 Plaschka, C, Hantsche, M, Dienemann, C, Burzinski, C, Plitzko, J, Cramer, P. 登録日 2016-03-09 公開日 2016-05-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Transcription initiation complex structures elucidate DNA opening. Nature, 533, 2016
4MEY	Crystal structure of Escherichia coli RNA polymerase holoenzyme 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Feng, Y, Zhang, Y, Arnold, E, Ebright, R.H. 登録日 2013-08-27 公開日 2014-05-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.948 Å) 主引用文献 Transcription inhibition by the depsipeptide antibiotic salinamide A. Elife, 3, 2014
6XEZ	Structure of SARS-CoV-2 replication-transcription complex bound to nsp13 helicase - nsp13(2)-RTC 分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, CHAPSO, ... 著者 Chen, J, Malone, B, Llewellyn, E.C, Campbell, E.A, Darst, S.A. 登録日 2020-06-14 公開日 2020-07-29 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural Basis for Helicase-Polymerase Coupling in the SARS-CoV-2 Replication-Transcription Complex. Cell, 182, 2020
7RWI	Mycobacterium tuberculosis RNA polymerase sigma L holoenzyme open promoter complex containing TNP-2198 分子名称: (3aM,9S,10bP,14S,15R,16S,17R,18R,19R,20S,21S,25R)-6,18,20-trihydroxy-14-methoxy-7,9,15,17,19,21,25-heptamethyl-1'-[2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl]-5,10,26-trioxo-3,5,9,10-tetrahydrospiro[9,4-(epoxypentadecanoimino)furo[2',3':7,8]naphtho[1,2-d]imidazole-2,4'-piperidin]-16-yl acetate, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Molodtsov, V, Ebright, R.H. 登録日 2021-08-19 公開日 2022-03-02 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Design, Synthesis, and Characterization of TNP-2198, a Dual-Targeted Rifamycin-Nitroimidazole Conjugate with Potent Activity against Microaerophilic and Anaerobic Bacterial Pathogens. J.Med.Chem., 65, 2022
4MIA	Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with RG7109 (N-{4-[6-tert-butyl-5-methoxy-8-(6-methoxy-2-oxo-2,5-dihydropyridin-3-yl)quinolin-3-yl]phenyl}methanesulfonamide) 分子名称: N-{4-[6-tert-butyl-5-methoxy-8-(6-methoxy-2-oxo-2,5-dihydropyridin-3-yl)quinolin-3-yl]phenyl}methanesulfonamide, RNA-directed RNA polymerase, ZINC ION 著者 Harris, S.F, Villasenor, A.G. 登録日 2013-08-30 公開日 2014-05-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Discovery of N-[4-[6-tert-butyl-5-methoxy-8-(6-methoxy-2-oxo-1H-pyridin-3-yl)-3-quinolyl]phenyl]methanesulfonamide (RG7109), a potent inhibitor of the hepatitis C virus NS5B polymerase. J.Med.Chem., 57, 2014
4MIB	Hepatitis C Virus polymerase NS5B genotype 1b (BK) in complex with Compound 48 (N-({(3S)-1-[6-tert-butyl-5-methoxy-8-(2-oxo-1,2-dihydropyridin-3-yl)quinolin-3-yl]pyrrolidin-3-yl}methyl)methanesulfonamide) 分子名称: DIMETHYL SULFOXIDE, N-({(3S)-1-[6-tert-butyl-5-methoxy-8-(2-oxo-1,2-dihydropyridin-3-yl)quinolin-3-yl]pyrrolidin-3-yl}methyl)methanesulfonamide, RNA-DIRECTED RNA POLYMERASE 著者 Harris, S.F, Villasenor, A.G. 登録日 2013-08-30 公開日 2014-05-07 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Discovery of N-[4-[6-tert-butyl-5-methoxy-8-(6-methoxy-2-oxo-1H-pyridin-3-yl)-3-quinolyl]phenyl]methanesulfonamide (RG7109), a potent inhibitor of the hepatitis C virus NS5B polymerase. J.Med.Chem., 57, 2014
7D7C	CryoEM structure of gp55-dependent RNA polymerase-promoter open complex 分子名称: DNA (nontemplate strand), DNA (template strand), DNA-directed RNA polymerase subunit alpha, ... 著者 Shi, J, Wen, A, Jin, S, Feng, Y. 登録日 2020-10-03 公開日 2021-01-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Transcription activation by a sliding clamp. Nat Commun, 12, 2021
2P1D	Crystal structure of dengue methyltransferase in complex with GTP and S-Adenosyl-L-homocysteine 分子名称: GUANOSINE-5'-MONOPHOSPHATE, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ... 著者 Egloff, M.P, Benarooch, D, Marseilles Structural Genomics Program @ AFMB (MSGP) 登録日 2007-03-05 公開日 2007-03-20 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 An RNA cap (nucleoside-2'-O)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization EMBO J., 21, 2002
6M6B	Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Shi, J, Wen, A, Feng, Y. 登録日 2020-03-14 公開日 2020-10-14 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structural basis of Mfd-dependent transcription termination. Nucleic Acids Res., 48, 2020
6XJF	X-ray crystal structure of Pyrococcus furiosus general transcription factor TFE-alpha (SeMet labeled protein) 分子名称: Transcription factor E 著者 Murakami, K.S, Jun, S.H. 登録日 2020-06-23 公開日 2020-07-08 最終更新日 2021-01-20 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
2P4V	Crystal structure of the transcript cleavage factor, GreB at 2.6A resolution 分子名称: Transcription elongation factor greB 著者 Vassylyeva, M.N, Svetlov, V, Dearborn, A.D, Klyuyev, S, Artsimovitch, I, Vassylyev, D.G. 登録日 2007-03-13 公開日 2008-01-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors. Embo Rep., 8, 2007
6KUJ	Structure of influenza D virus polymerase bound to cRNA promoter in class 1 分子名称: 3'-cRNA promoter, 5'-cRNA promoter, Polymerase 3, ... 著者 Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. 登録日 2019-09-02 公開日 2019-10-02 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of influenza D virus polymerase bound to cRNA promoter in Mode A conformation NAT NANOTECHNOL, 2019
6L4R	Crystal structure of Enterovirus D68 RdRp 分子名称: RdRp 著者 Wang, M.L, Li, L, Zhang, Y, Chen, Y.P, Su, D. 登録日 2019-10-21 公開日 2020-06-10 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.147 Å) 主引用文献 Structure of the enterovirus D68 RNA-dependent RNA polymerase in complex with NADPH implicates an inhibitor binding site in the RNA template tunnel. J.Struct.Biol., 211, 2020
7DG7	DPBB domain of VCP-like ATPase from Methanopyrus kandleri 分子名称: ATPase of the AAA+ class, IMIDAZOLE, ZINC ION 著者 Yagi, S, Tagami, S. 登録日 2020-11-11 公開日 2021-09-29 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.604 Å) 主引用文献 Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021
7DG9	DPBB domain of VCP-like ATPase from Aeropyrum pernix 分子名称: Cell division control protein 48, AAA family, ZINC ION 著者 Yagi, S, Tagami, S. 登録日 2020-11-11 公開日 2021-09-29 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.602 Å) 主引用文献 Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021
7DBO	DPBB domain of VCP-like ATPase from Thermoplasma acidophilum 分子名称: SULFATE ION, VCP-like ATPase 著者 Yagi, S, Tagami, S. 登録日 2020-10-21 公開日 2021-09-29 最終更新日 2021-11-17 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021
7YOT	Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus 分子名称: NDV P protein, RNA-directed RNA polymerase L 著者 Chen, Y, Jingyuan, C. 登録日 2022-08-02 公開日 2023-02-15 最終更新日 2023-08-30 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023
7YOU	Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus 分子名称: NDV P protein, RNA-directed RNA polymerase L 著者 Chen, Y, Jingyuan, C, Xiaoying, F. 登録日 2022-08-02 公開日 2023-02-15 最終更新日 2023-08-30 実験手法 ELECTRON MICROSCOPY (3.41 Å) 主引用文献 Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023
7YOV	Cryo-EM structure of RNA polymerase in complex with P protein tetramer of Newcastle disease virus 分子名称: NDV P protein, RNA-directed RNA polymerase L 著者 Chen, Y, Jingyuan, C, Xiaoying, F. 登録日 2022-08-02 公開日 2023-02-15 最終更新日 2023-08-30 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Structure of the Newcastle Disease Virus L protein in complex with tetrameric phosphoprotein. Nat Commun, 14, 2023
7DI1	Crystal structure of the rationally designed mkDPBB_sym_86 protein 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, mkDPBB_sym_86 protein 著者 Yagi, S, Tagami, S. 登録日 2020-11-18 公開日 2021-09-29 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.097 Å) 主引用文献 Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J.Am.Chem.Soc., 143, 2021

<53545556575859606162636465666768>