PDB: 195 件ウェブページステータス検索Chemie searchBIRD

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7KQ0	PCNA bound to peptide mimetic 分子名称: LYS-ARG-ARG-GLN-THR-SER-MET-THR-ASP-TYR-TYR-HIS-SER-LYS-ARG, Proliferating cell nuclear antigen 著者 Vandborg, B.A, Bruning, J.B. 登録日 2020-11-13 公開日 2021-05-19 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Unlocking the PIP-box: A peptide library reveals interactions that drive high-affinity binding to human PCNA. J.Biol.Chem., 296, 2021
7NV1	Human Pol Kappa holoenzyme with Ub-PCNA 分子名称: DNA Primer, DNA Template, DNA polymerase kappa, ... 著者 Lancey, C, De Biasio, A, Hamdan, S.M. 登録日 2021-03-15 公開日 2021-11-03 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA. Nat Commun, 12, 2021
7NV0	Human Pol Kappa holoenzyme with wt PCNA 分子名称: DNA Primer, DNA Template, DNA polymerase kappa, ... 著者 Lancey, C, De Biasio, A, Hamdan, S.M. 登録日 2021-03-15 公開日 2021-11-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA. Nat Commun, 12, 2021
7EFA	Crystal structure of the complex between the C-terminal domain of mouse MUTYH and human PCNA 分子名称: Adenine DNA glycosylase, Proliferating cell nuclear antigen 著者 Nakamura, T, Nakabeppu, Y, Yamagata, Y. 登録日 2021-03-21 公開日 2021-06-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure of the mammalian adenine DNA glycosylase MUTYH: insights into the base excision repair pathway and cancer. Nucleic Acids Res., 49, 2021
7M5M	PCNA bound to peptide mimetic 分子名称: N-BUTANE, Peptide mimetic (ACE)RQCSMTCFYHSK(NH2) with linker, Proliferating cell nuclear antigen 著者 Vandborg, B.A, Bruning, J.B. 登録日 2021-03-24 公開日 2021-08-11 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A cell permeable bimane-constrained PCNA-interacting peptide. Rsc Chem Biol, 2, 2021
7M5L	PCNA bound to peptide mimetic with linker 分子名称: PROPANE, Peptide mimetic (ACE)RQCSMTCFYHSK(NH2) with linker, Proliferating cell nuclear antigen 著者 Vandborg, B.A, Bruning, J.B. 登録日 2021-03-24 公開日 2021-08-11 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A cell permeable bimane-constrained PCNA-interacting peptide. Rsc Chem Biol, 2, 2021
7M5N	PCNA bound to peptide mimetic with linker 分子名称: 1,3-dimethylbenzene, Peptide mimetic (ACE)RQCSMTCFYHSK(NH2) with linker, Proliferating cell nuclear antigen 著者 Vandborg, B.A, Bruning, J.B. 登録日 2021-03-24 公開日 2021-08-11 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 A cell permeable bimane-constrained PCNA-interacting peptide. Rsc Chem Biol, 2, 2021
7O1E	Crystal structure of PCNA from Chaetomium thermophilum 分子名称: Proliferating cell nuclear antigen 著者 Alphey, M.A, MacNeill, S, Yang, D. 登録日 2021-03-29 公開日 2022-04-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
7O1F	PCNA from Chaetomium thermophilum in complex with PolD4 PIP peptide 分子名称: Peptide fragment from PolD4, Proliferating cell nuclear antigen, SODIUM ION 著者 Alphey, M.A, MacNeill, S, Yang, D. 登録日 2021-03-29 公開日 2022-04-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Non-canonical binding of the Chaetomium thermophilum PolD4 N-terminal PIP motif to PCNA involves Q-pocket and compact 2-fork plug interactions but no 3 10 helix. Febs J., 290, 2023
7EP8	Crystal structure of PCNA from Neurospora crassa 分子名称: Proliferating cell nuclear antigen 著者 Sundaram, R, Vasudevan, D. 登録日 2021-04-26 公開日 2021-06-30 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Interdomain connecting loop and J loop structures determine cross-species compatibility of PCNA. J.Biol.Chem., 297, 2021
7N5L	PCNA from Thermococcus gammatolerans: crystal II, collection 20, 3.07 A, 77.0 MGy 分子名称: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION 著者 Marin-Tovar, Y, Rudino-Pinera, E. 登録日 2021-06-05 公開日 2022-05-04 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.07 Å) 主引用文献 PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
7N5K	PCNA from Thermococcus gammatolerans: crystal II, collection 1, 1.98 A, 3.84 MGy 分子名称: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION 著者 Marin-Tovar, Y, Rudino-Pinera, E. 登録日 2021-06-05 公開日 2022-05-04 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
7N5M	PCNA from Thermococcus gammatolerans: crystal III, collection 1, 2.00 A, 1.91 MGy 分子名称: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION 著者 Marin-Tovar, Y, Rudino-Pinera, E. 登録日 2021-06-05 公開日 2022-05-04 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
7N5I	PCNA from Thermococcus gammatolerans: crystal I, collection 1, 1.95 A, 5.22 MGy 分子名称: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION 著者 Marin-Tovar, Y, Rudino-Pinera, E. 登録日 2021-06-05 公開日 2022-05-04 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
7N5N	PCNA from Thermococcus gammatolerans: crystal III, collection 15, 2.20 A, 28.7 MGy 分子名称: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION 著者 Marin-Tovar, Y, Rudino-Pinera, E. 登録日 2021-06-05 公開日 2022-05-04 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
7N5J	PCNA from Thermococcus gammatolerans: crystal I, collection 5, 2.82 A, 89.1 MGy 分子名称: DNA polymerase sliding clamp, GLYCEROL, SULFATE ION 著者 Marin-Tovar, Y, Rudino-Pinera, E. 登録日 2021-06-05 公開日 2022-05-04 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 PCNA from Thermococcus gammatolerans: A protein involved in chromosomal DNA metabolism intrinsically resistant at high levels of ionizing radiation. Proteins, 90, 2022
7RPO	Archaeal DNA ligase and heterotrimeric PCNA in complex with non-ligatable DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-03 公開日 2021-11-17 最終更新日 2022-03-16 実験手法 ELECTRON MICROSCOPY (4.16 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
7RPX	Archaeal DNA ligase and heterotrimeric PCNA in complex with end-joined DNA 分子名称: DNA ligase, DNA polymerase sliding clamp 1, DNA polymerase sliding clamp 2, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-04 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
7RPW	Archaeal DNA ligase and heterotrimeric PCNA in complex with adenylated DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-04 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.38 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
7QNZ	human Lig1-DNA-PCNA complex reconstituted in absence of ATP 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase 1, Oligo13P, ... 著者 Blair, K, Tehseen, M, Raducanu, V.S, Shahid, T, Lancey, C, Cruehet, R, Hamdan, S, De Biasio, A. 登録日 2021-12-23 公開日 2023-01-11 実験手法 ELECTRON MICROSCOPY (4.58 Å) 主引用文献 Mechanism of human Lig1 regulation by PCNA in Okazaki fragment sealing. Nat Commun, 13, 2022
7QO1	complex of DNA ligase I and FEN1 on PCNA and DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase 1, Flap endonuclease 1, ... 著者 Blair, K, Tehseen, M, Raducanu, V.S, Shahid, T, Lancey, C, Cruehet, R, Hamdan, S, De Biasio, A. 登録日 2021-12-23 公開日 2023-01-11 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Mechanism of human Lig1 regulation by PCNA in Okazaki fragment sealing. Nat Commun, 13, 2022
7TFI	Atomic model of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with an open clamp 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2022-01-06 公開日 2022-11-16 実験手法 ELECTRON MICROSCOPY (3.41 Å) 主引用文献 Cryo-EM structures reveal that RFC recognizes both the 3'- and 5'-DNA ends to load PCNA onto gaps for DNA repair. Elife, 11, 2022
7TFJ	Atomic model of S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with a closed clamp ring 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2022-01-06 公開日 2022-11-16 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryo-EM structures reveal that RFC recognizes both the 3'- and 5'-DNA ends to load PCNA onto gaps for DNA repair. Elife, 11, 2022
7TFH	Atomic model of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to two DNA molecules, one at the 5'-recessed end and the other at the 3'-recessed end 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2022-01-06 公開日 2022-11-16 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 Cryo-EM structures reveal that RFC recognizes both the 3'- and 5'-DNA ends to load PCNA onto gaps for DNA repair. Elife, 11, 2022
7THJ	Structure of the yeast clamp loader (Replication Factor C RFC) bound to the sliding clamp (Proliferating Cell Nuclear Antigen PCNA) in an autoinhibited conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Gaubitz, C, Liu, X, Pajak, J, Stone, N, Hayes, J, Demo, G, Kelch, B.A. 登録日 2022-01-11 公開日 2022-02-16 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Cryo-EM structures reveal high-resolution mechanism of a DNA polymerase sliding clamp loader. Elife, 11, 2022

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