PDB: 217686 件ウェブページステータス検索Chemie searchBIRD

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1BIZ	HIV-1 INTEGRASE CORE DOMAIN 分子名称: CACODYLATE ION, HIV-1 INTEGRASE 著者 Goldgur, Y, Dyda, F, Hickman, A.B, Jenkins, T.M, Craigie, R, Davies, D.R. 登録日 1998-06-21 公開日 1998-08-19 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium. Proc.Natl.Acad.Sci.USA, 95, 1998
5F8J	Enterovirus 71 Polymerase Elongation Complex (C1S4 Form) 分子名称: GLYCEROL, Genome polyprotein, MAGNESIUM ION, ... 著者 Shu, B, Gong, P. 登録日 2015-12-09 公開日 2016-06-22 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.675 Å) 主引用文献 Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation Proc.Natl.Acad.Sci.USA, 113, 2016
8DID	Virtual screening for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors 分子名称: 3C-like proteinase nsp5, 5-bromo-3-[(5-bromo-2-chlorophenyl)methoxy]pyridine-2-carbaldehyde 著者 Singh, I, Shoichet, B.K. 登録日 2022-06-29 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Large library docking for novel SARS-CoV-2 main protease non-covalent and covalent inhibitors. Protein Sci., 32, 2023
1C0R	COMPLEX OF VANCOMYCIN WITH D-LACTIC ACID 分子名称: CHLORIDE ION, LACTIC ACID, VANCOMYCIN, ... 著者 Loll, P.J, Kaplan, J, Selinsky, B, Axelsen, P.H. 登録日 1999-07-20 公開日 1999-07-30 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Vancomycin Binding to Low-Affinity Ligands: Delineating a Minimum Set of Interactions Necessary for High-Affinity Binding. J.Med.Chem., 42, 1999
1C24	E. COLI METHIONINE AMINOPEPTIDASE: METHIONINE PHOSPHINATE COMPLEX 分子名称: (1-AMINO-3-METHYLSULFANYL-PROPYL)-PHOSPHINIC ACID, COBALT (II) ION, METHIONINE AMINOPEPTIDASE, ... 著者 Lowther, W.T, Zhang, Y, Sampson, P.B, Honek, J.F, Matthews, B.W. 登録日 1999-07-22 公開日 1999-11-17 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Insights into the mechanism of Escherichia coli methionine aminopeptidase from the structural analysis of reaction products and phosphorus-based transition-state analogues. Biochemistry, 38, 1999
6HIJ	Cryo-EM structure of the human ABCG2-MZ29-Fab complex with cholesterol and PE lipids docked 分子名称: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, ATP-binding cassette sub-family G member 2, CHOLESTEROL, ... 著者 Jackson, S.M, Manolaridis, I, Kowal, J, Zechner, M, Taylor, N.M.I, Bause, M, Bauer, S, Bartholomaeus, R, Stahlberg, H, Bernhardt, G, Koenig, B, Buschauer, A, Altmann, K.H, Locher, K.P. 登録日 2018-08-30 公開日 2018-09-19 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (3.56 Å) 主引用文献 Structural basis of small-molecule inhibition of human multidrug transporter ABCG2. Nat.Struct.Mol.Biol., 25, 2018
5ACO	Cryo-EM structure of PGT128 Fab in complex with BG505 SOSIP.664 Env trimer 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HIV-1 ENVELOPE GLYCOPROTEIN, ... 著者 Lee, J.H, Ward, A.B. 登録日 2015-08-17 公開日 2015-09-30 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (4.36 Å) 主引用文献 Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy. Structure, 23, 2015
5LVT	Structure of HU protein from Lactococcus lactis 分子名称: ACETATE ION, DNA-binding protein HU, SULFATE ION 著者 Le Meur, R, Coste, F, Castaing, B. 登録日 2016-09-14 公開日 2017-10-25 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of HU protein from Lactococcus lactis To Be Published
8FUH	Rubrerythrin from B. pseudomallei: apo form 分子名称: DI(HYDROXYETHYL)ETHER, Rubrerythrin 著者 Monteiro, D.C.F, Snell, M.E, Budziszewski, G.R, Bowman, S.E.J. 登録日 2023-01-17 公開日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.852 Å) 主引用文献 Rubrerythrin from B. pseudomallei: apo form To Be Published
5LY0	Crystal structure of LOB domain of Ramosa2 from Wheat 分子名称: LOB family transfactor Ramosa2.1, ZINC ION 著者 Wei, X.-B, Zhang, B, Chen, W.-F, Fan, S.-H, Rety, S, Xi, X.-G. 登録日 2016-09-23 公開日 2017-10-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.877 Å) 主引用文献 Structural analysis reveals a "molecular calipers" mechanism for a LATERAL ORGAN BOUNDARIES DOMAIN transcription factor protein from wheat. J. Biol. Chem., 294, 2019
6SZU	Bat Influenza A polymerase pre-termination complex with pyrophosphate using 44-mer vRNA template with mutated oligo(U) sequence 分子名称: 5-oxidanyl-4-oxidanylidene-1-[(1-pyrrolo[2,3-b]pyridin-1-ylcyclopentyl)methyl]pyridine-3-carboxylic acid, MAGNESIUM ION, PYROPHOSPHATE 2-, ... 著者 Wandzik, J.M, Kouba, T, Cusack, S. 登録日 2019-10-02 公開日 2020-04-15 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.41 Å) 主引用文献 A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
4XHB	Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with pentanediol and CHES 分子名称: (1R,2S)-cyclopentane-1,2-diol, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Sialidase B 著者 Brear, P. 登録日 2015-01-05 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB To be published
4XJW	Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with Optactin at pH 7.4 in PBS with DMSO as the cryoprotectant 分子名称: (1s,3R,4S)-1-[(cyclohexylamino)methyl]-3,4-dihydroxycyclopentanesulfonic acid, DIMETHYL SULFOXIDE, PHOSPHATE ION, ... 著者 Brear, P. 登録日 2015-01-09 公開日 2016-01-13 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 `The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB To be published
5LTN	Crystal structure of Lymphocytic choriomeningitis mammarenavirus endonuclease complexed with DPBA 分子名称: 2-4-DIOXO-4-PHENYLBUTANOIC ACID, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Saez-Ayala, M, Yekwa, E.L, Canard, B, Alvarez, K, Ferron, F. 登録日 2016-09-07 公開日 2017-09-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Crystal structures of Lymphocytic choriomeningitis virusendonuclease domain complexed with diketo-acid ligands. Iucrj, 5, 2018
8FVV	Rubrerythrin from B. pseudomallei: iron-bound 分子名称: FE (III) ION, Rubrerythrin 著者 Monteiro, D.C.F, Snell, M.E, Budziszewski, G.R, Bowman, S.E.J. 登録日 2023-01-19 公開日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Rubrerythrin from B. pseudomallei: iron-bound To Be Published
4XD0	X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens 分子名称: (3R,4S,5R,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl][hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate, CHLORIDE ION, N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid, ... 著者 Thoden, J.B, Woodford, C.R, Holden, H.M. 登録日 2014-12-18 公開日 2015-01-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 New Role for the Ankyrin Repeat Revealed by a Study of the N-Formyltransferase from Providencia alcalifaciens. Biochemistry, 54, 2015
8FXD	Rubrerythrin from B. pseudomallei: manganese-bound 分子名称: DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, Rubrerythrin 著者 Monteiro, D.C.F, Snell, M.E, Budziszewski, G.R, Bowman, S.E.J. 登録日 2023-01-24 公開日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Rubrerythrin from B. pseudomallei: manganese-bound To Be Published
1AUA	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P FROM SACCHAROMYCES CEREVISIAE 分子名称: PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P, octyl beta-D-glucopyranoside 著者 Sha, B, Phillips, S.E, Bankaitis, V.A, Luo, M. 登録日 1997-08-20 公開日 1997-12-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the Saccharomyces cerevisiae phosphatidylinositol-transfer protein. Nature, 391, 1998
6SNV	DNA mismatch repair proteins MLH1 and MLH3 分子名称: DNA mismatch repair protein MLH1, DNA mismatch repair protein MLH3, ZINC ION 著者 Dai, J, Chervy, P, Legrand, P, Ropars, V, Charbonnier, J.B. 登録日 2019-08-27 公開日 2021-05-19 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Molecular basis of the dual role of the Mlh1-Mlh3 endonuclease in MMR and in meiotic crossover formation. Proc.Natl.Acad.Sci.USA, 118, 2021
5FIC	Open form of murine Acid Sphingomyelinase in presence of lipid 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Gorelik, A, Illes, K, Heinz, L.X, Superti-Furga, G, Nagar, B. 登録日 2015-12-22 公開日 2016-07-06 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of mammalian acid sphingomyelinase. Nat Commun, 7, 2016
8G1M	Lectin domain of SasG (Staphylococcus aureus Surface protein G) 分子名称: CALCIUM ION, E domain-containing protein 著者 Maciag, J.J, Herr, A.B. 登録日 2023-02-02 公開日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Mechanistic basis of staphylococcal interspecies competition for skin colonization To Be Published
8BO1	ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, bound to Latrunculin-B-ATP-Mg-actin, and 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE and 2 Mg ions 分子名称: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, AZIDE ION, ... 著者 Teixeira-Nunes, M, Renault, L, Retailleau, P. 登録日 2022-11-14 公開日 2023-09-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin. Plos Pathog., 19, 2023
4XJ9	Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with Optactin at pH 5.0 in 50mM Sodium Acetate with DMSO as the cryoprotectant 分子名称: (1s,3R,4S)-1-[(cyclohexylamino)methyl]-3,4-dihydroxycyclopentanesulfonic acid, DIMETHYL SULFOXIDE, Sialidase B 著者 Brear, P. 登録日 2015-01-08 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 `The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB To be published
8G1L	Lectin domain of Aap (Staphylococcus epidermidis Accumulation Associated Protein) 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, Accumulation associated protein, CALCIUM ION, ... 著者 Maciag, J.J, Herr, A.B. 登録日 2023-02-02 公開日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.06 Å) 主引用文献 Mechanistic basis of staphylococcal interspecies competition for skin colonization To Be Published
4XJZ	Crystal structure of apo NanB sialidase from streptococcus pneumoniae at pH 7.4 in PBS with DMSO 分子名称: DIMETHYL SULFOXIDE, PHOSPHATE ION, Sialidase B 著者 Brear, P. 登録日 2015-01-09 公開日 2016-01-13 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB To be published

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