PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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1MEN	complex structure of human GAR Tfase and substrate beta-GAR 分子名称: GLYCINAMIDE RIBONUCLEOTIDE, Phosphoribosylglycinamide formyltransferase 著者 Zhang, Y, Desharnais, J, Greasley, S.E, Beardsley, G.P, Boger, D.L, Wilson, I.A. 登録日 2002-08-08 公開日 2002-12-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Crystal structures of human GAR Tfase of low and high pH and with substrate beta-GAR Biochemistry, 41, 2002
8C3W	Crystal structure of a computationally designed heme binding protein, dnHEM1 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, ... 著者 Ortmayer, M, Levy, C. 登録日 2022-12-29 公開日 2023-07-05 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Design of Heme Enzymes with a Tunable Substrate Binding Pocket Adjacent to an Open Metal Coordination Site. J.Am.Chem.Soc., 145, 2023
3LTD	X-ray structure of a non-biological ATP binding protein determined at 2.8 A by multi-wavelength anomalous dispersion 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ... 著者 Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C. 登録日 2010-02-15 公開日 2010-09-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry, 49, 2010
3LTC	X-ray structure of a non-biological ATP binding protein determined in the presence of 10 mM ATP at 2.0 A by multi-wavelength anomalous dispersion 分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ... 著者 Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C. 登録日 2010-02-15 公開日 2010-09-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry, 49, 2010
3LTA	Crystal structure of a non-biological ATP binding protein with a TYR-PHE mutation within the ligand binding domain 分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP BINDING PROTEIN-DX, CHLORIDE ION, ... 著者 Simmons, C.R, Magee, C.L, Allen, J.P, Chaput, J.C. 登録日 2010-02-15 公開日 2010-09-22 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Three-dimensional structures reveal multiple ADP/ATP binding modes for a synthetic class of artificial proteins. Biochemistry, 49, 2010
7SMJ	F2N structure, protein design with deep learning 分子名称: AI-designed TIM-barrel F2N 著者 Mathews, I.I, Anand-Achim, N, Huang, P. 登録日 2021-10-26 公開日 2022-03-16 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Protein sequence design with a learned potential. Nat Commun, 13, 2022
8TNO	UNC_239 from Chroma generative model 分子名称: UNC_239 著者 Ng-Thow-Hing, C, Van Vlack, E.R, Lord, D.M. 登録日 2023-08-02 公開日 2023-11-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Illuminating protein space with a programmable generative model. Nature, 623, 2023
8TNM	UNC_079 from Chroma generative model 分子名称: UNC_079 著者 Ng-Thow-Hing, C, Van Vlack, E.R, Lord, D.M. 登録日 2023-08-02 公開日 2023-11-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Illuminating protein space with a programmable generative model. Nature, 623, 2023
8CUS	Accurate computational design of genetically encoded 3D protein crystals 分子名称: I432-1(NaCl) Chain A, I432-1(NaCl) Chain B 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-05-17 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.98 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUT	Accurate computational design of genetically encoded 3D protein crystals 分子名称: I432-1(Imd) Chain A, I432-1(Imd) Chain B 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-05-17 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CUX	Accurate computational design of genetically encoded 3D protein crystals 分子名称: R3-1 Chain B 著者 Bera, A.K, Natterman, U, Baker, D. 登録日 2022-05-17 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CWZ	Accurate computational design of genetically encoded 3D protein crystals 分子名称: I432-1-X3 Chain A, I432-1-X3 Chain B 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-05-19 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (5.53 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CWS	Accurate computational design of genetically encoded 3D protein crystals 分子名称: F4132-2 Chain A, F4132-2 Chain B 著者 Bera, A.K, Li, Z, Baker, D. 登録日 2022-05-19 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (4.4 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
8CWY	Accurate computational design of genetically encoded 3D protein crystals 分子名称: T32-15-1, T32-15-2 著者 Li, Z, Borst, A.J, Baker, D. 登録日 2022-05-19 公開日 2023-11-01 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (3.34 Å) 主引用文献 Accurate computational design of three-dimensional protein crystals. Nat Mater, 22, 2023
7FAO	Top7 surface mutant K42A Q43A K46A K57S K58S, and I68R 分子名称: MAGNESIUM ION, Top7 Surface mutant 著者 Ito, Y, Makabe, K. 登録日 2021-07-07 公開日 2022-05-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Surface Engineering of Top7 to Facilitate Structure Determination. Int J Mol Sci, 23, 2022
2HYZ	Crystal structure of an 8 repeat consensus TPR superhelix (orthorombic crystal form) 分子名称: SAMARIUM (III) ION, SYNTHETIC CONSENSUS TPR PROTEIN 著者 Kajander, T, Cortajarena, A.L, Regan, L. 登録日 2006-08-08 公開日 2008-02-19 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and stability of designed TPR protein superhelices: unusual crystal packing and implications for natural TPR proteins. Acta Crystallogr.,Sect.D, 63, 2007
8C5U	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG (IC8) 分子名称: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Goovaerts, Q, Shen, J, Patel, S.S, Das, K. 登録日 2023-01-10 公開日 2023-08-30 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.62 Å) 主引用文献 Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8C5S	Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex with 7-mer RNA, pppGpGpUpApApApU (IC7) 分子名称: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Goovaerts, Q, Shen, J, Patel, S.S, Das, K. 登録日 2023-01-10 公開日 2023-08-30 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
2P6J	Full-sequence computational design and solution structure of a thermostable protein variant 分子名称: designed engrailed homeodomain variant UVF 著者 Shah, P.S, Hom, G.K, Ross, S.A, Lassila, J.K, Crowhurst, K.A, Mayo, S.L. 登録日 2007-03-18 公開日 2007-08-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Full-sequence Computational Design and Solution Structure of a Thermostable Protein Variant. J.Mol.Biol., 372, 2007
5WKP	Crystal Structure of the Human mitochondrial Cysteine Desulfurase in complex with ISD11 and Iron-Sulfur Cluster Scaffold Protein ISCU1, and E. coli ACP1 protein at 3.15A 分子名称: Acyl carrier protein, Cysteine desulfurase, mitochondrial, ... 著者 Boniecki, M.T, Cygler, M. 登録日 2017-07-25 公開日 2017-11-15 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Structure and functional dynamics of the mitochondrial Fe/S cluster synthesis complex. Nat Commun, 8, 2017
7L5M	Crystal Structure of the DiB-RM-split Protein 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lipocalin family protein, SODIUM ION, ... 著者 Bozhanova, N.G, Harp, J.M, Meiler, J. 登録日 2020-12-22 公開日 2021-10-27 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 Computational redesign of a fluorogen activating protein with Rosetta. Plos Comput.Biol., 17, 2021
7L5L	Crystal structure of the DiB-RM protein 分子名称: Lipocalin family protein, SULFATE ION 著者 Bozhanova, N.G, Harp, J.M, Meiler, J. 登録日 2020-12-22 公開日 2021-10-27 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 Computational redesign of a fluorogen activating protein with Rosetta. Plos Comput.Biol., 17, 2021
7L5K	Crystal structure of the DiB-RM protein 分子名称: DODECYL-BETA-D-MALTOSIDE, ISOPROPYL ALCOHOL, Lipocalin family protein, ... 著者 Bozhanova, N.G, Harp, J.M, Meiler, J. 登録日 2020-12-22 公開日 2021-10-27 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Computational redesign of a fluorogen activating protein with Rosetta. Plos Comput.Biol., 17, 2021
2LR2	Designed IgG and lanthanide binding probe for solution NMR, MRI and luminescence microscopy 分子名称: Immunoglobulin G-binding protein A 著者 Barb, A.W, Ho, T.G, Prestegard, J.H. 登録日 2012-03-21 公開日 2012-09-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Lanthanide binding and IgG affinity construct: Potential applications in solution NMR, MRI, and luminescence microscopy. Protein Sci., 21, 2012
7ONE	Crystal structure of the self-assembled SAKe6BE designer protein 分子名称: SAKe6BE 著者 Wouters, S.M.L, Noguchi, H, Velpula, G, Clarke, D.E, Voet, A.R.D, De Feyter, S. 登録日 2021-05-25 公開日 2022-12-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 SAKe: Computationally Designed Modular Protein Building Blocks for Macromolecular Assemblies To be published

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