PDB: 223790 件ウェブページステータス検索Chemie searchBIRD

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7CH4	Crystal structure of the SARS-CoV-2 S RBD in complex with BD-604 Fab 分子名称: BD-604 Fab H, BD-604 Fab L, Spike protein S1 著者 Du, S, Xiao, J.Y. 登録日 2020-07-05 公開日 2020-09-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Structurally Resolved SARS-CoV-2 Antibody Shows High Efficacy in Severely Infected Hamsters and Provides a Potent Cocktail Pairing Strategy. Cell, 183, 2020
4KDP	TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*CP*GP*CP*AP*GP*CP*GP*CP*GP*CP*AP*GP*CP*CP*CP*TP*A)-3'), ... 著者 Chang, Y.M, Chen, C.K.-M, Wang, A.H.-J. 登録日 2013-04-25 公開日 2014-03-19 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 TcaR-ssDNA complex crystal structure reveals new DNA binding mechanism of the MarR family proteins. Nucleic Acids Res., 42, 2014
4KTK	Crystal structure of Mycobacterium tuberculosis CYP121 in complex with 4-(3-amino-4-(4-hydroxyphenyl)-1H-pyrazol-5-yl)benzene-1,3-diol 分子名称: 4-[3-amino-4-(4-hydroxyphenyl)-1H-pyrazol-5-yl]benzene-1,3-diol, Cytochrome P450 121, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Hudson, S.A. 登録日 2013-05-20 公開日 2013-07-03 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Overcoming the Limitations of Fragment Merging: Rescuing a Strained Merged Fragment Series Targeting Mycobacterium tuberculosis CYP121. Chemmedchem, 8, 2013
4KTQ	BINARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM T. AQUATICUS BOUND TO A PRIMER/TEMPLATE DNA 分子名称: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), PROTEIN (LARGE FRAGMENT OF DNA POLYMERASE I) 著者 Li, Y, Waksman, G. 登録日 1998-09-09 公開日 1999-01-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J., 17, 1998
4K0A	Crystal structure of CD4-mimetic miniprotein M48U7 in complex with HIV-1 YU2 gp120 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CD4-MIMETIC MINIPROTEIN M48U7, CITRATE ANION, ... 著者 Acharya, P, Kwong, P.D. 登録日 2013-04-03 公開日 2013-06-12 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Structural Basis for Highly Effective HIV-1 Neutralization by CD4-Mimetic Miniproteins Revealed by 1.5 A Cocrystal Structure of gp120 and M48U1. Structure, 21, 2013
4KGB	Structure of succinyl-CoA: 3-ketoacid CoA transferase from Drosophila melanogaster 分子名称: SULFATE ION, Succinyl-CoA:3-ketoacid-coenzyme A transferase 著者 Wang, Y.C, Shi, Z.B, Zhang, M. 登録日 2013-04-29 公開日 2013-10-23 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Structure of succinyl-CoA:3-ketoacid CoA transferase from Drosophila melanogaster. Acta Crystallogr.,Sect.F, 69, 2013
4K5E	Structure of neuronal nitric oxide synthase heme domain in complex with (R)-1,2-bis((2-amino-4-methylpyridin-6-yl)-methoxy)-propan-3-amine 分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, 6,6'-{[(2R)-3-aminopropane-1,2-diyl]bis(oxymethanediyl)}bis(4-methylpyridin-2-amine), ACETATE ION, ... 著者 Li, H, Poulos, T.L. 登録日 2013-04-14 公開日 2013-09-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.892 Å) 主引用文献 Chiral linkers to improve selectivity of double-headed neuronal nitric oxide synthase inhibitors. Bioorg.Med.Chem.Lett., 23, 2013
4K7L	Crystal structure of RNase S variant (K7C/Q11C) 分子名称: Ribonuclease pancreatic, SULFATE ION 著者 Genz, M, Straeter, N. 登録日 2013-04-17 公開日 2014-05-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Crystal structure of RNase S with a [Hg(Cys2)] metal center in the S-peptide as a template for structure-based design of artificial metalloenzymes using peptide-protein complementation To be Published
4KO4	High X-ray dose structure of anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air 分子名称: CALCIUM ION, CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, ... 著者 Volbeda, A, Cavazza, C, Fontecilla-Camps, J.C. 登録日 2013-05-11 公開日 2013-07-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural foundations for the O2 resistance of Desulfomicrobium baculatum [NiFeSe]-hydrogenase. Chem.Commun.(Camb.), 49, 2013
4KN9	High-resolution structure of H2-activated anaerobically purified Dm. baculatum [NiFeSe]-hydrogenase after crystallization under air 分子名称: CALCIUM ION, CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, ... 著者 Volbeda, A, Cavazza, C, Fontecilla-Camps, J.C. 登録日 2013-05-09 公開日 2013-07-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural foundations for the O2 resistance of Desulfomicrobium baculatum [NiFeSe]-hydrogenase. Chem.Commun.(Camb.), 49, 2013
4KQU	Crystal Structure of Farnesyl Synthase Mutant (Y204A) Complexed with Mg, Alendronate and Isopentenyl Pyrophosphate 分子名称: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE, Farnesyl pyrophosphate synthase, ... 著者 Barnett, B.L, Tsoumpra, M.K, Muniz, J.R.C, Walter, R.L. 登録日 2013-05-15 公開日 2014-04-30 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Crystal Structure of Farnesyl Synthase Mutant (Y204A) Complexed with Mg, Alendronate and Isopentenyl Pyrophosphate To be Published
7C8S	Crystal structure of DUSP22 mutant_N128A 分子名称: Dual specificity protein phosphatase 22, SULFATE ION 著者 Lai, C.H, Lyu, P.C. 登録日 2020-06-03 公開日 2020-10-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.31 Å) 主引用文献 Structural Insights into the Active Site Formation of DUSP22 in N-loop-containing Protein Tyrosine Phosphatases. Int J Mol Sci, 21, 2020
6WPC	Crystal structure of Bacillus thuringiensis Cry1A.2 tryptic core variant 分子名称: Cry1A.2 著者 Rydel, T.J, Evdokimov, A. 登録日 2020-04-27 公開日 2021-03-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 Bacillus thuringiensis chimeric proteins Cry1A.2 and Cry1B.2 to control soybean lepidopteran pests: New domain combinations enhance insecticidal spectrum of activity and novel receptor contributions. Plos One, 16, 2021
4KRG	SeMet Haemonchus contortus Phosphoethanolamine N-methyltransferase 1 in complex with phosphoethanolamine and S-adenosylhomocysteine 分子名称: PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, Phosphoethanolamine N-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, ... 著者 Lee, S.G, Jez, J.M. 登録日 2013-05-16 公開日 2013-09-25 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Evolution of structure and mechanistic divergence in di-domain methyltransferases from nematode phosphocholine biosynthesis. Structure, 21, 2013
4KPN	Plant nucleoside hydrolase - PpNRh1 enzyme 分子名称: CALCIUM ION, Nucleoside N-ribohydrolase 1 著者 Morera, S, Vigouroux, A, Kopecny, D. 登録日 2013-05-14 公開日 2013-11-27 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Structure and Function of Nucleoside Hydrolases from Physcomitrella patens and Maize Catalyzing the Hydrolysis of Purine, Pyrimidine, and Cytokinin Ribosides. Plant Physiol., 163, 2013
4KRZ	Apo crystal structure of pyruvate kinase (PYK) from Trypanosoma cruzi 分子名称: GLYCEROL, POTASSIUM ION, Pyruvate kinase 著者 Zhong, W, Morgan, H.P, McNae, I.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D. 登録日 2013-05-17 公開日 2014-11-19 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of pyruvate kinases display evolutionarily divergent allosteric strategies. R Soc Open Sci, 1, 2014
4KQX	Mutant Slackia exigua KARI DDV in complex with NAD and an inhibitor 分子名称: HISTIDINE, Ketol-acid reductoisomerase, MAGNESIUM ION, ... 著者 Brinkmann-Chen, S, Flock, T, Cahn, J.K.B, Snow, C.D, Brustad, E.M, Mcintosh, J.A, Meinhold, P, Zhang, L, Arnold, F.H. 登録日 2013-05-15 公開日 2013-06-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 General approach to reversing ketol-acid reductoisomerase cofactor dependence from NADPH to NADH. Proc.Natl.Acad.Sci.USA, 110, 2013
4KSI	Crystal Structure Analysis of the Acidic Leucine Aminopeptidase of Tomato 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, GLYCEROL, ... 著者 DuPrez, K.T, Scranton, M, Walling, L, Fan, L. 登録日 2013-05-17 公開日 2013-06-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of tomato wound-induced leucine aminopeptidase sheds light on substrate specificity. Acta Crystallogr.,Sect.D, 70, 2014
4K3G	Immunoglobulin lambda variable domain L5(L89S) fluorogen activating protein 分子名称: alpha-D-mannopyranose, immunoglobulin lambda variable domain L5(L89S) 著者 Stanfield, R.L, Szent-Gyorgyi, C, Wilson, I.A. 登録日 2013-04-10 公開日 2013-10-09 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Malachite Green Mediates Homodimerization of Antibody VL Domains to Form a Fluorescent Ternary Complex with Singular Symmetric Interfaces. J.Mol.Biol., 425, 2013
4K3V	Structure of Staphylococcus aureus MntC 分子名称: ABC superfamily ATP binding cassette transporter, binding protein, MANGANESE (II) ION 著者 Parris, K.D, Mosyak, L. 登録日 2013-04-11 公開日 2013-07-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Three-Dimensional Structure and Biophysical Characterization of Staphylococcus aureus Cell Surface Antigen-Manganese Transporter MntC. J.Mol.Biol., 425, 2013
6DS2	Crystal structure of Ni(II)-bound human calprotectin 分子名称: NICKEL (II) ION, Protein S100-A8, Protein S100-A9, ... 著者 Nolan, E.M, Drennan, C.L, Nakashige, T.G. 登録日 2018-06-13 公開日 2018-07-04 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Biophysical Examination of the Calcium-Modulated Nickel-Binding Properties of Human Calprotectin Reveals Conformational Change in the EF-Hand Domains and His3Asp Site. Biochemistry, 57, 2018
4KB0	Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC ) 分子名称: DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.004 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
4KBF	two different open conformations of the helicase core of the RNA helicase Hera 分子名称: ADENOSINE MONOPHOSPHATE, Heat resistant RNA dependent ATPase, SODIUM ION, ... 著者 Rudolph, M.G, Klostermeier, D. 登録日 2013-04-23 公開日 2013-07-31 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Rearranging RNA structures at 75C? toward the molecular mechanism and physiological function of the thermus thermophilus DEAD-box helicase hera. Biopolymers, 99, 2013
4KCJ	Structure of neuronal nitric oxide synthase heme domain in complex with N,N'-((ethane-1,2-diylbis(oxy))bis(3,1-phenylene))bis(thiophene-2-carboximidamide) 分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N,N'-[ethane-1,2-diylbis(oxybenzene-3,1-diyl)]dithiophene-2-carboximidamide, ... 著者 Li, H, Poulos, T.L. 登録日 2013-04-24 公開日 2014-02-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Potent and Selective Double-Headed Thiophene-2-carboximidamide Inhibitors of Neuronal Nitric Oxide Synthase for the Treatment of Melanoma. J.Med.Chem., 57, 2014
4KD1	CDK2 in complex with Dinaciclib 分子名称: 1,2-ETHANEDIOL, 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium, Cyclin-dependent kinase 2 著者 Martin, M.P, Schonbrunn, E. 登録日 2013-04-24 公開日 2013-09-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Cyclin-dependent kinase inhibitor dinaciclib interacts with the acetyl-lysine recognition site of bromodomains. Acs Chem.Biol., 8, 2013

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