PDB: 223790 件ウェブページステータス検索Chemie searchBIRD

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6WDW	Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with Dimethylaminoethylindole Phenylhydroxamate Inhibitor 分子名称: 4-({3-[2-(dimethylamino)ethyl]-1H-indol-1-yl}methyl)-N-hydroxybenzamide, PHOSPHATE ION, POTASSIUM ION, ... 著者 Herbst-Gervasoni, C.J, Christianson, D.W. 登録日 2020-04-01 公開日 2020-07-22 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis for the Selective Inhibition of HDAC10, the Cytosolic Polyamine Deacetylase. Acs Chem.Biol., 15, 2020
4KBD	DNA STRUCTURE OF A MUTATED KB SITE 分子名称: DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*GP*AP*GP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*CP*TP*CP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3') 著者 Tisne, C, Hartmann, B, Delepierre, M. 登録日 1998-11-30 公開日 1999-10-14 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 NF-kappa B binding mechanism: a nuclear magnetic resonance and modeling study of a GGG --> CTC mutation. Biochemistry, 38, 1999
8ZN2	Structure of Phosphopantetheine adenylyltransferase (PPAT) from Enterobacter sp. with the expression tag bound in the substrate binding site of a neighbouring molecule at 2.65 A resolution. 分子名称: 1,2-ETHANEDIOL, GLYCEROL, PHOSPHONOACETIC ACID, ... 著者 Ahmad, N, Sharma, P, Bhushan, A, Sharma, S, Singh, T.P. 登録日 2024-05-25 公開日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.651 Å) 主引用文献 Structure of Phosphopantetheine adenylyltransferase (PPAT) from Enterobacter sp. with the expression tag bound in the substrate binding site of a neighbouring molecule at 2.65 A resolution. To Be Published
4K8Z	KOD Polymerase in binary complex with dsDNA 分子名称: 1,2-ETHANEDIOL, COBALT HEXAMMINE(III), DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3'), ... 著者 Bergen, K, Betz, K, Welte, W, Diederichs, K, Marx, A. 登録日 2013-04-19 公開日 2013-06-26 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex Chembiochem, 14, 2013
4K9M	Crystal Structure of the His281Asn mutant of Benzoylformate Decarboxylase from Pseudomonas putida 分子名称: Benzoylformate decarboxylase, CALCIUM ION, MAGNESIUM ION, ... 著者 Brodkin, H.R, McLeish, M.J. 登録日 2013-04-20 公開日 2013-05-08 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 Crystal Structure of the His281Asn mutant of Benzoylformate Decarboxylase from Pseudomonas putida To be Published
7BN3	Crystal structure of C-terminal domain of PABPC1 in complex with Nucleoprotein from Human Coronavirus 229E 分子名称: GLYCEROL, Isoform 2 of Polyadenylate-binding protein 1, Nucleoprotein from Human Coronavirus 229E, ... 著者 Badgujar, D.C, Dobritzsch, D. 登録日 2021-01-21 公開日 2022-03-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs Nat Commun, 14, 2023
4KDL	Crystal structure of p97/VCP N in complex with OTU1 UBXL 分子名称: Transitional endoplasmic reticulum ATPase, Ubiquitin thioesterase OTU1 著者 Kim, S.J, Kim, E.E. 登録日 2013-04-25 公開日 2014-03-19 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Structural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP). J.Biol.Chem., 289, 2014
8XMG	Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P), RBD-closed state 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Li, L.J, Gu, Y.H, Shi, K.Y, Qi, J.X, Gao, G.F. 登録日 2023-12-27 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants. Structure, 2024
8XNK	Cryo-EM structure of SARS-CoV-2 Omicron HV.1 spike protein(6P) in complex with human ACE2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike glycoprotein, ... 著者 Li, L.J, Gu, Y.H, Shi, K.Y, Qi, J.X, Gao, G.F. 登録日 2023-12-30 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.78 Å) 主引用文献 Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants. Structure, 2024
4KDZ	Crystal structure of tRNA/rRNA methyltransferase YibK from Escherichia coli (Target NYSGRC-012599) 分子名称: tRNA (cytidine(34)-2'-O)-methyltransferase 著者 Kim, J, Toro, R, Bhosle, R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC) 登録日 2013-04-25 公開日 2013-08-07 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Crystal structure of tRNA/rRNA methyltransferase YibK from Escherichia coli (Target NYSGRC-012599) To be Published
8XUT	XBB.1.5 Spike Trimer in complex with heparan sulfate 分子名称: 2-O-sulfo-beta-L-altropyranuronic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Yue, C, Liu, P, Mao, X. 登録日 2024-01-14 公開日 2024-07-03 最終更新日 2024-08-14 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Spike N354 glycosylation augments SARS-CoV-2 fitness for human adaptation through structural plasticity. Natl Sci Rev, 11, 2024
9IQ9	Crystal structure of Copper-bound N(omega)-hydroxy-L-arginine hydrolase with reduced Cys86 分子名称: COPPER (I) ION, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Oda, K, Matoba, Y. 登録日 2024-07-12 公開日 2024-07-24 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Copper inactivates DcsB by oxidation of the Cys86 to cysteine sulfinic aicd To Be Published
4KB1	Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) 分子名称: Bulge DNA, MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
9AYX	SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5.1) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Zhang, Q.E, Acharya, P. 登録日 2024-03-08 公開日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5.1) To Be Published
4KBG	almost closed conformation of the helicase core of the RNA helicase Hera 分子名称: Heat resistant RNA dependent ATPase, SULFATE ION 著者 Rudolph, M.G, Klostermeier, D. 登録日 2013-04-23 公開日 2013-07-31 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Rearranging RNA structures at 75C? toward the molecular mechanism and physiological function of the thermus thermophilus DEAD-box helicase hera. Biopolymers, 99, 2013
6WID	Nucleotide incorporation intermediate into quaternary complex of human Polymerase Mu on a complementary DNA double-strand break substrate 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Kaminski, A.M, Kunkel, T.A, Pedersen, L.C, Bebenek, K. 登録日 2020-04-09 公開日 2020-10-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural snapshots of human DNA polymerase mu engaged on a DNA double-strand break. Nat Commun, 11, 2020
4KFC	Crystal structure of a hyperactive mutant of response regulator KdpE complexed to its promoter DNA 分子名称: KDP operon transcriptional regulatory protein KdpE, Promoter DNA 著者 Kumar, S, Narayanan, A, Yernool, D.A. 登録日 2013-04-26 公開日 2014-02-19 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.53 Å) 主引用文献 An asymmetric heterodomain interface stabilizes a response regulator-DNA complex. Nat Commun, 5, 2014
4KBQ	Structure of the CHIP-TPR domain in complex with the Hsc70 Lid-Tail domains 分子名称: E3 ubiquitin-protein ligase CHIP, Heat shock cognate 71 kDa protein 著者 Page, R.C, Amick, J, Nix, J.C, Misra, S. 登録日 2013-04-23 公開日 2015-01-14 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 A Bipartite Interaction between Hsp70 and CHIP Regulates Ubiquitination of Chaperoned Client Proteins. Structure, 23, 2015
8XN3	SARS-CoV-2 Omicron HV.1 RBD in complex with human ACE2 (local refinement from the spike protein) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike protein S1, ... 著者 Li, L.J, Gu, Y.H, Shi, K.Y, Qi, J.X, Gao, G.F. 登録日 2023-12-28 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 ELECTRON MICROSCOPY (2.64 Å) 主引用文献 Spike structures, receptor binding, and immune escape of recently circulating SARS-CoV-2 Omicron BA.2.86, JN.1, EG.5, EG.5.1, and HV.1 sub-variants. Structure, 2024
6WRO	CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 1-PHOSPHATASE INPP1 IN COMPLEX GADOLINIUM BUT NO LITHIUM AT 3 ANGSTROM RESOLUTION 分子名称: GADOLINIUM ATOM, Inositol polyphosphate 1-phosphatase, SULFATE ION 著者 Dollins, D.E, Endo-Streeter, S, York, J.D. 登録日 2020-04-29 公開日 2020-11-18 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A structural basis for lithium and substrate binding of an inositide phosphatase. J.Biol.Chem., 296, 2020
4KGA	Crystal structure of kallikrein-related peptidase 4 分子名称: 1,2-ETHANEDIOL, Kallikrein-4, NICKEL (II) ION 著者 Ilyichova, O.V, Swedberg, J.E, de Veer, S.J, Sit, K.C, Harris, J.M, Buckle, A.M. 登録日 2013-04-29 公開日 2014-04-30 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Direct and indirect mechanisms of KLK4 inhibition revealed by structure and dynamics Sci Rep, 6, 2016
9AYY	SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5.1) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein 著者 Zhang, Q.E, Acharya, P. 登録日 2024-03-08 公開日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5.1) To Be Published
7BN1	Clathrin heavy chain N-terminal domain complexed with peptide from Protein mu-NS of Reovirus type 1 分子名称: Clathrin heavy chain 1, Protein mu-NS from Reovirus type 1, TETRAETHYLENE GLYCOL 著者 Badgujar, D.C, Dobritzsch, D. 登録日 2021-01-21 公開日 2022-03-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs Nat Commun, 14, 2023
4KCK	Structure of neuronal nitric oxide synthase heme domain in complex with N-(3-(2-((3-(thiophene-2-carboximidamido)benzyl)amino)ethyl)phenyl)thiophene-2-carboximidamide 分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, ACETATE ION, N-(3-{2-[(3-{[(Z)-imino(thiophen-2-yl)methyl]amino}benzyl)amino]ethyl}phenyl)thiophene-2-carboximidamide, ... 著者 Li, H, Poulos, T.L. 登録日 2013-04-24 公開日 2014-02-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Potent and Selective Double-Headed Thiophene-2-carboximidamide Inhibitors of Neuronal Nitric Oxide Synthase for the Treatment of Melanoma. J.Med.Chem., 57, 2014
7BH8	3H4-Fab HLA-E-VL9 co-complex 分子名称: 3H4 Fab heavy chain, 3H4 Fab light chain, Beta-2-microglobulin, ... 著者 Walters, L.C, Rozbesky, D. 登録日 2021-01-10 公開日 2022-04-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Mouse and human antibodies bind HLA-E-leader peptide complexes and enhance NK cell cytotoxicity. Commun Biol, 5, 2022

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