PDB: 2705 件ウェブページステータス検索Chemie searchBIRD

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1YIT	Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui 分子名称: 23S RIBOSOMAL RNA, 50S RIBOSOMAL PROTEIN L10E, 50S RIBOSOMAL PROTEIN L11P, ... 著者 Tu, D, Blaha, G, Moore, P.B, Steitz, T.A. 登録日 2005-01-13 公開日 2005-04-26 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance. Cell(Cambridge,Mass.), 121, 2005
8EUG	Ytm1 associated nascent 60S ribosome State 3 分子名称: 60S ribosomal protein L10-A, 60S ribosomal protein L11-A, 60S ribosomal protein L13, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-18 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ESQ	Ytm1 associated nascent 60S ribosome State 2 分子名称: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... 著者 Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. 登録日 2022-10-14 公開日 2022-11-30 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
7S0A	Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain variant, H786A 分子名称: Terpene synthase 著者 Ronnebaum, T.A, Christianson, D.W. 登録日 2021-08-30 公開日 2021-10-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Engineering the Prenyltransferase Domain of a Bifunctional Assembly-Line Terpene Synthase. Biochemistry, 60, 2021
6JJ8	Crystal structure of OsHXK6-ATP-Mg2+ complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... 著者 He, C, Wei, P, Chen, J, Wang, H, Wan, Y, Zhou, J, Zhu, Y, Huang, W, Yin, L. 登録日 2019-02-25 公開日 2019-07-03 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of OsHXK6-ATP-Mg2+ complex To Be Published
4U27	Crystal structure of the E. coli ribosome bound to flopristin and linopristin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D. 登録日 2014-07-16 公開日 2014-07-30 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Synergy of streptogramin antibiotics occurs independently of their effects on translation. Antimicrob.Agents Chemother., 58, 2014
8G7R	Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rybak, M.Y, Gagnon, M.G. 登録日 2023-02-16 公開日 2024-03-06 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8I9X	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
7ZJW	Rabbit 80S ribosome as it decodes the Sec-UGA codon 分子名称: 18S rRNA, 28S rRNA, 40S Ribosomal protein eS19, ... 著者 Hilal, T, Simonovic, M, Spahn, C.M.T. 登録日 2022-04-12 公開日 2022-10-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon. Science, 376, 2022
8IDT	human nuclear pre-60S ribosomal particle - State G 分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ... 著者 Zhang, Y, Gao, N. 登録日 2023-02-14 公開日 2023-08-09 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
1YJ9	Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22 分子名称: 23S Ribosomal RNA, 50S RIBOSOMAL PROTEIN L10E, 50S RIBOSOMAL PROTEIN L11P, ... 著者 Tu, D, Blaha, G, Moore, P.B, Steitz, T.A. 登録日 2005-01-13 公開日 2005-04-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance. Cell(Cambridge,Mass.), 121, 2005
5J5B	Structure of the WT E coli ribosome bound to tetracycline 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Cocozaki, A, Ferguson, A. 登録日 2016-04-01 公開日 2016-07-27 最終更新日 2018-08-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors. Proc.Natl.Acad.Sci.USA, 113, 2016
8WHX	Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Kumar, N, Sharma, S, Kaushal, P.S. 登録日 2023-09-23 公開日 2024-02-28 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
2AZL	Crystal structure for the mutant F117E of Thermotoga maritima octaprenyl pyrophosphate synthase 分子名称: octoprenyl-diphosphate synthase 著者 Sun, H.Y, Ko, T.P, Kuo, C.J, Guo, R.T, Chou, C.C, Liang, P.H, Wang, A.H. 登録日 2005-09-12 公開日 2006-03-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Homodimeric hexaprenyl pyrophosphate synthase from the thermoacidophilic crenarchaeon Sulfolobus solfataricus displays asymmetric subunit structures J.Bacteriol., 187, 2005
7VYF	Matrix arm of active state CI from Rotenone dataset 分子名称: (2R,6aS,12aS)-8,9-dimethoxy-2-(prop-1-en-2-yl)-1,2,12,12a-tetrahydrofuro[2',3':7,8][1]benzopyrano[2,3-c][1]benzopyran-6(6aH)-one, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ... 著者 Gu, J.K, Yang, M.J. 登録日 2021-11-14 公開日 2022-11-23 最終更新日 2023-06-28 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022
7VXU	Matrix arm of deactive state CI from Q10 dataset 分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Acyl carrier protein, ... 著者 Gu, J.K, Yang, M.J. 登録日 2021-11-13 公開日 2022-11-23 最終更新日 2023-06-07 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022
7VYA	Matrix arm of deactive state CI from Q10-NADH dataset 分子名称: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ... 著者 Gu, J.K, Yang, M.J. 登録日 2021-11-13 公開日 2022-12-14 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol., 29, 2022
3RFZ	Crystal structure of the FimD usher bound to its cognate FimC:FimH substrate 分子名称: Chaperone protein fimC, Outer membrane usher protein, type 1 fimbrial synthesis, ... 著者 Phan, G, Remaut, H, Lebedev, A, Geibel, S, Waksman, G. 登録日 2011-04-07 公開日 2011-06-01 最終更新日 2012-03-28 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of the FimD usher bound to its cognate FimC-FimH substrate. Nature, 474, 2011
4JVJ	Crystal structure of human FPPS in complex with magnesium, CL01131, and sulfate 分子名称: ({[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methanediyl)bis(phosphonic acid), Farnesyl pyrophosphate synthase, MAGNESIUM ION, ... 著者 Park, J, Leung, C.-Y, Tsantrizos, Y.S, Berghuis, A.M. 登録日 2013-03-25 公開日 2014-01-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Thienopyrimidine Bisphosphonate (ThPBP) Inhibitors of the Human Farnesyl Pyrophosphate Synthase: Optimization and Characterization of the Mode of Inhibition. J.Med.Chem., 56, 2013
1HKC	RECOMBINANT HUMAN HEXOKINASE TYPE I COMPLEXED WITH GLUCOSE AND PHOSPHATE 分子名称: D-GLUCOSE 6-PHOSPHOTRANSFERASE, PHOSPHATE ION, POTASSIUM ION, ... 著者 Aleshin, A.E, Honzatko, R.B. 登録日 1998-07-01 公開日 1998-11-11 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Regulation of hexokinase I: crystal structure of recombinant human brain hexokinase complexed with glucose and phosphate. J.Mol.Biol., 282, 1998
1YGP	PHOSPHORYLATED FORM OF YEAST GLYCOGEN PHOSPHORYLASE WITH PHOSPHATE BOUND IN THE ACTIVE SITE. 分子名称: PHOSPHATE ION, PYRIDOXAL-5'-PHOSPHATE, YEAST GLYCOGEN PHOSPHORYLASE 著者 Lin, K, Rath, V.L, Dai, S.C, Fletterick, R.J, Hwang, P.K. 登録日 1996-05-30 公開日 1996-12-23 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A protein phosphorylation switch at the conserved allosteric site in GP. Science, 273, 1996
3O1B	CRYSTAL STRUCTURE OF DIMERIC KLHXK1 IN CRYSTAL FORM II 分子名称: Hexokinase 著者 Kuettner, E.B, Kettner, K, Keim, A, Kriegel, T.M, Strater, N. 登録日 2010-07-21 公開日 2010-10-13 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal Structure of Hexokinase KlHxk1 of Kluyveromyces lactis: A MOLECULAR BASIS FOR UNDERSTANDING THE CONTROL OF YEAST HEXOKINASE FUNCTIONS VIA COVALENT MODIFICATION AND OLIGOMERIZATION. J.Biol.Chem., 285, 2010
1V4H	Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima F52A mutant 分子名称: SULFATE ION, octoprenyl-diphosphate synthase 著者 Guo, R.T, Kuo, C.J, Chou, C.C, Ko, T.P, Shr, H.L, Liang, P.H, Wang, A.H.-J. 登録日 2003-11-14 公開日 2004-03-02 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal Structure of Octaprenyl Pyrophosphate Synthase from Hyperthermophilic Thermotoga maritima and Mechanism of Product Chain Length Determination J.Biol.Chem., 279, 2004
3JCS	2.8 Angstrom cryo-EM structure of the large ribosomal subunit from the eukaryotic parasite Leishmania 分子名称: 26S alpha ribosomal RNA, 26S delta ribosomal RNA, 26S epsilon ribosomal RNA, ... 著者 Shalev-Benami, M, Zhang, Y, Matzov, D, Halfon, Y, Zackay, A, Rozenberg, H, Zimmerman, E, Bashan, A, Jaffe, C.L, Yonath, A, Skiniotis, G. 登録日 2016-01-21 公開日 2016-07-20 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 2.8- angstrom Cryo-EM Structure of the Large Ribosomal Subunit from the Eukaryotic Parasite Leishmania. Cell Rep, 16, 2016
3F6L	Structure of the F4 fimbrial chaperone FaeE 分子名称: Chaperone protein faeE 著者 Van Molle, I, Moonens, K, Buts, L, Garcia-Pino, A, Wyns, L, De Greve, H, Bouckaert, J. 登録日 2008-11-06 公開日 2009-05-19 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.801 Å) 主引用文献 The F4 fimbrial chaperone FaeE is stable as a monomer that does not require self-capping of its pilin-interactive surfaces Acta Crystallogr.,Sect.D, 65, 2009

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