PDB: 47065 件ウェブページステータス検索Chemie searchBIRD

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8HL4	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome 分子名称: 16s rRNA (1493-MER), 23s rRNA (3000-MER), 30S ribosomal protein S10, ... 著者 Wang, Y.H, Zhou, J. 登録日 2022-11-28 公開日 2023-11-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.62 Å) 主引用文献 Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome. Nucleic Acids Res., 51, 2023
6OM7	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Li, W, Cate, J.H.D. 登録日 2019-04-18 公開日 2019-06-19 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule. Nat.Struct.Mol.Biol., 26, 2019
8C01	Enp1TAP_A population of yeast small ribosomal subunit precursors 分子名称: 18S rRNA precursor, 20S-pre-rRNA D-site endonuclease NOB1, 40S ribosomal protein S0-A, ... 著者 Milkereit, P, Poell, G. 登録日 2022-12-15 公開日 2022-12-28 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Impact of the yeast S0/uS2-cluster ribosomal protein rpS21/eS21 on rRNA folding and the architecture of small ribosomal subunit precursors. Plos One, 18, 2023
8C00	Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21 分子名称: 18S rRNA precursor, 40S ribosomal protein S1-A, 40S ribosomal protein S11-A, ... 著者 Milkereit, P, Poell, G. 登録日 2022-12-15 公開日 2022-12-28 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Impact of the yeast S0/uS2-cluster ribosomal protein rpS21/eS21 on rRNA folding and the architecture of small ribosomal subunit precursors. Plos One, 18, 2023
6OY7	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 7 min 分子名称: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*TP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Shin, Y, Murakami, K.S. 登録日 2019-05-14 公開日 2019-07-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.04 Å) 主引用文献 Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OY5	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min 分子名称: DNA (5'-D(*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*CP*TP*CP*TP*GP*AP*TP*GP*CP*AP*G)-3'), DNA (5'-D(P*CP*CP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*AP*T)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Shin, Y, Murakami, K.S. 登録日 2019-05-14 公開日 2019-06-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6P67	Crystal Structure of a Complex of human IL-7Ralpha with an anti-IL-7Ralpha 2B8 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-IL-7R 2B8 Fab heavy chain, ... 著者 Walsh, S.T.R, Kashi, L, Kohnhorst, C.L. 登録日 2019-06-03 公開日 2019-09-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 New anti-IL-7R alpha monoclonal antibodies show efficacy against T cell acute lymphoblastic leukemia in pre-clinical models. Leukemia, 34, 2020
8HL1	Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome 分子名称: 16s rRNA (1493-MER), 23s rRNA (3000-MER), 30S ribosomal protein S10, ... 著者 Wang, Y.H, Zhou, J. 登録日 2022-11-28 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (3.93 Å) 主引用文献 Cryo-electron microscopy structure and translocation mechanism of the crenarchaeal ribosome. Nucleic Acids Res., 51, 2023
6PAM	Structure of a bacterial Atm1-family ABC transporter with MgADP bound 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATM1-type heavy metal exporter, MAGNESIUM ION 著者 Fan, C, Kaiser, J.T, Rees, D.C. 登録日 2019-06-11 公開日 2020-06-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 A structural framework for unidirectional transport by a bacterial ABC exporter. Proc.Natl.Acad.Sci.USA, 117, 2020
6P18	Q21 transcription antitermination complex: loading complex 分子名称: DNA (67-MER) fragment carrying phage-21 pR' promoter and pause element, nontemplate strand, template strand, ... 著者 Yin, Z, Ebright, R.H. 登録日 2019-05-19 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis of Q-dependent antitermination. Proc.Natl.Acad.Sci.USA, 116, 2019
6P4H	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2) 分子名称: 18S rRNA, IAPV-IRES, RACK1, ... 著者 Acosta-Reyes, F.J, Neupane, R, Frank, J, Fernandez, I.S. 登録日 2019-05-27 公開日 2019-09-18 最終更新日 2020-01-08 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. Embo J., 38, 2019
6P4G	Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1) 分子名称: 18S rRNA, IAPV-IRES, RACK1, ... 著者 Acosta-Reyes, F.J, Neupane, R, Frank, J, Fernandez, I.S. 登録日 2019-05-27 公開日 2019-09-18 最終更新日 2020-01-08 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. Embo J., 38, 2019
6P70	X-ray crystal structure of bacterial RNA polymerase and pyrBI promoter complex 分子名称: DNA (5'-D(*TP*AP*TP*AP*AP*TP*CP*GP*AP*TP*CP*TP*TP*TP*GP*CP*CP*GP*GP*G)-3'), DNA (5'-D(P*TP*CP*CP*CP*GP*GP*CP*AP*AP*AP*TP*TP*GP*TP*CP*CP*G)-3'), DNA-directed RNA polymerase subunit alpha, ... 著者 Shin, Y, Murakami, K.S. 登録日 2019-06-04 公開日 2019-06-19 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.052 Å) 主引用文献 Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
8I9T	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1 分子名称: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9P	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16 分子名称: 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, 60S ribosomal protein L16-like protein, ... 著者 Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. 登録日 2023-02-07 公開日 2023-05-17 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
6P7B	Crystal structure of Fowlpox virus resolvase and substrate Holliday junction DNA complex 分子名称: DNA (29-MER), Holliday junction resolvase 著者 Li, N, Shi, K, Rao, T, Banerjee, S, Aihara, H. 登録日 2019-06-05 公開日 2020-04-29 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.317 Å) 主引用文献 Structural insights into the promiscuous DNA binding and broad substrate selectivity of fowlpox virus resolvase. Sci Rep, 10, 2020
8CEP	Kasugamycin bound to the 30S body 分子名称: (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE, 16S rRNA, 23S rRNA, ... 著者 Paternoga, H, Beckert, B, Wilson, D.N. 登録日 2023-02-02 公開日 2023-07-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.04 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CAI	Streptomycin and Hygromycin B bound to the 30S body 分子名称: 16S rRNA, 30S ribosomal protein S16, 30S ribosomal protein S2, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. 登録日 2023-01-24 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.08 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CGK	Lincomycin and Avilamycin bound to the 50S subunit 分子名称: (2R,3S,4R,6S)-4-hydroxy-6-{[(2R,3aR,4R,4'R,5'S,6S,6'R,7aR)-4'-hydroxy-6-{[(2S,3R,4R,5S,6R)-3-hydroxy-2-{[(2R,3S,4S,5S,6S)-4-hydroxy-6-({(2R,3aS,3a'R,6S,6'R,7R,7'R,7aR,7a'R)-7'-hydroxy-7'-[(1S)-1-hydroxyethyl]-6'-methyl-7-[(2-methylpropanoyl)oxy]octahydro-4H-2,4'-spirobi[[1,3]dioxolo[4,5-c]pyran]-6-yl}oxy)-5-methoxy-2-(methoxymethyl)tetrahydro-2H-pyran-3-yl]oxy}-5-methoxy-6-methyltetrahydro-2H-pyran-4-yl]oxy}-4,6',7a-trimethyloctahydro-4H-spiro[1,3-dioxolo[4,5-c]pyran-2,2'-pyran]-5'-yl]oxy}-2-methyltetrahydro-2H-pyran-3-yl 3,5-dichloro-4-hydroxy-2-methoxy-6-methylbenzoate (non-preferred name), 23S rRNA, 50S ribosomal protein L15, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. 登録日 2023-02-05 公開日 2023-07-19 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.64 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CGD	Clindamycin bound to the 50S subunit 分子名称: 23S rRNA, 50S ribosomal protein L15, 50S ribosomal protein L25, ... 著者 Paternoga, H, Koller, T.O, Beckert, B, Wilson, D.N. 登録日 2023-02-03 公開日 2023-07-26 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.98 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CMI	Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Omicron (BA.1) Spike peptide S761-775 分子名称: 1,2-ETHANEDIOL, HLA class II histocompatibility antigen, DR alpha chain, ... 著者 MacLachlan, B.J, Mason, G.H, Sourfield, D.O, Godkin, A.J, Rizkallah, P.J. 登録日 2023-02-19 公開日 2023-07-26 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural definition of HLA class II-presented SARS-CoV-2 epitopes reveals a mechanism to escape pre-existing CD4 + T cell immunity. Cell Rep, 42, 2023
8CEU	Retapamulin and Capreomycin bound to the 50S subunit 分子名称: 23S rRNA, 50S ribosomal protein L15, 50S ribosomal protein L25, ... 著者 Paternoga, H, Beckert, B, Wilson, D.N. 登録日 2023-02-02 公開日 2023-07-26 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.83 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CGJ	Streptomycin bound to the 30S body 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Beckert, B, Wilson, D.N. 登録日 2023-02-05 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.79 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CGR	Apramycin bound to the 30S body 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S16, ... 著者 Paternoga, H, Koller, T.O, Beckert, B, Wilson, D.N. 登録日 2023-02-06 公開日 2023-07-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.12 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023
8CAM	Evernimicin bound to the 50S subunit 分子名称: 23S rRNA, 50S ribosomal protein L15, 50S ribosomal protein L25, ... 著者 Paternoga, H, Crowe-McAuliffe, C, Novacek, J, Wilson, D.N. 登録日 2023-01-24 公開日 2023-07-26 最終更新日 2023-11-15 実験手法 ELECTRON MICROSCOPY (1.86 Å) 主引用文献 Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol., 30, 2023

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