PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4RZL	DNA recognition domain of the cytosine modification-dependent restriction endonuclease LpnPI 分子名称: PENTAETHYLENE GLYCOL, Restriction endonuclease LpnPI 著者 Sasnauskas, G, Tamulaitiene, G, Siksnys, V. 登録日 2014-12-22 公開日 2015-06-10 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure-guided sequence specificity engineering of the modification-dependent restriction endonuclease LpnPI. Nucleic Acids Res., 43, 2015
8OZE	cryoEM structure of SPARTA complex dimer high resolution 分子名称: DNA (5'-D(P*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*C)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*G)-3'), ... 著者 Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. 登録日 2023-05-09 公開日 2023-08-16 最終更新日 2023-08-23 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZI	cryoEM structure of SPARTA complex pre-NAD cleavage 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Piwi domain-containing protein, ... 著者 Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. 登録日 2023-05-09 公開日 2023-08-16 最終更新日 2023-08-23 実験手法 ELECTRON MICROSCOPY (3.22 Å) 主引用文献 Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZG	cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-1 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), MAGNESIUM ION, Piwi domain-containing protein, ... 著者 Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. 登録日 2023-05-09 公開日 2023-08-16 最終更新日 2023-08-23 実験手法 ELECTRON MICROSCOPY (3.37 Å) 主引用文献 Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZ6	cryoEM structure of SPARTA complex ligand-free 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), ... 著者 Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. 登録日 2023-05-08 公開日 2023-08-16 最終更新日 2023-08-23 実験手法 ELECTRON MICROSCOPY (3.97 Å) 主引用文献 Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
8OZF	cryoEM structure of SPARTA complex Tetramer Post-NAD cleavage-2 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), Piwi domain-containing protein, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), ... 著者 Babatunde, E, Dong, C.N, Xu, H.L, Henning, S. 登録日 2023-05-09 公開日 2023-08-16 最終更新日 2023-08-23 実験手法 ELECTRON MICROSCOPY (3.73 Å) 主引用文献 Activation mechanism of a short argonaute-TIR prokaryotic immune system. Sci Adv, 9, 2023
7ECH	Crystal Structure of d(G4C2)2-K in F222 space group 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*C)-3'), POTASSIUM ION 著者 Geng, Y, Liu, C, Cai, Q, Luo, Z, Zhu, G. 登録日 2021-03-12 公開日 2021-06-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Crystal structure of parallel G-quadruplex formed by the two-repeat ALS- and FTD-related GGGGCC sequence. Nucleic Acids Res., 49, 2021
3WBM	Crystal Structure of protein-RNA complex 分子名称: DNA/RNA-binding protein Alba 1, RNA (25-MER) 著者 Ding, J, Wang, D.C. 登録日 2013-05-20 公開日 2013-12-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Biochemical and structural insights into RNA binding by Ssh10b, a member of the highly conserved Sac10b protein family in Archaea. J.Biol.Chem., 289, 2014
7V6V	trimolecular G-quadruplexes consists of a hairpin motif and two short chains 分子名称: DNA (5'-D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), DNA (5'-D(*TP*GP*GP*GP*A)-3') 著者 Zhang, N, Jing, H.T, Hu, W.X. 登録日 2021-08-20 公開日 2023-02-08 最終更新日 2024-05-15 実験手法 SOLID-STATE NMR 主引用文献 Conversion to Trimolecular G-Quadruplex by Spontaneous Hoogsteen Pairing-Based Strand Displacement Reaction between Bimolecular G-Quadruplex and Double G-Rich Probes. J.Am.Chem.Soc., 2023
5W7G	An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation 分子名称: DNA (253-MER), ORF132, ORF140 著者 Kasson, P, DiMaio, F, Yu, X, Lucas-Staat, S, Krupovic, M, Schouten, S, Prangishvili, D, Egelman, E. 登録日 2017-06-19 公開日 2017-07-19 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Model for a novel membrane envelope in a filamentous hyperthermophilic virus. Elife, 6, 2017
1A83	INTRAMOLECULAR I-MOTIF, NMR, 6 STRUCTURES 分子名称: DNA (5'-(MCY)CTTTCCTTTACCTTTCC-3') 著者 Han, X, Leroy, J.L, Gueron, M. 登録日 1998-04-01 公開日 1998-06-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 An intramolecular i-motif: the solution structure and base-pair opening kinetics of d(5mCCT3CCT3ACCT3CC). J.Mol.Biol., 278, 1998
1BQJ	CRYSTAL STRUCTURE OF D(ACCCT) 分子名称: DNA (5'-D(*AP*CP*CP*CP*T)-3') 著者 Weil, J, Min, T, Yang, C, Wang, S, Sutherland, C, Sinha, N, Kang, C.H. 登録日 1998-08-17 公開日 1999-03-18 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Stabilization of the i-motif by intramolecular adenine-adenine-thymine base triple in the structure of d(ACCCT). Acta Crystallogr.,Sect.D, 55, 1999
7V6E	DREP3 分子名称: DNAation factor-related protein 3, isoform A 著者 Lee, S.Y, Park, H.H. 登録日 2021-08-20 公開日 2022-08-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Helical filament structure of the DREP3 CIDE domain reveals a unified mechanism of CIDE-domain assembly. Acta Crystallogr D Struct Biol, 77, 2021
2JPZ	Human telomere DNA quadruplex structure in K+ solution hybrid-2 form 分子名称: DNA (26-MER) 著者 Dai, J, Carver, M, Punchihewa, C, Jones, R, Yang, D. 登録日 2007-05-25 公開日 2007-12-04 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence Nucleic Acids Res., 35, 2007
3Q0A	X-ray crystal structure of the transcription initiation complex of the N4 mini-vRNAP with P2 promoter: Mismatch complex 分子名称: DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*A*GP*TP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), GUANOSINE-5'-TRIPHOSPHATE, PHOSPHATE ION, ... 著者 Murakami, K.S. 登録日 2010-12-15 公開日 2011-02-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA, 108, 2011
2KEM	Extended structure of citidine deaminase domain of APOBEC3G 分子名称: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION 著者 Harjes, E, Gross, P.J, Chen, K, Lu, Y, Shindo, K, Nowarski, R, Gross, J.D, Kotler, M, Harris, R.S, Matsuo, H. 登録日 2009-01-30 公開日 2009-06-02 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 An extended structure of the APOBEC3G catalytic domain suggests a unique holoenzyme model J.Mol.Biol., 389, 2009
2KN8	NMR structure of the C-terminal domain of pUL89 分子名称: DNA cleavage and packaging protein large subunit, UL89 著者 Couvreux, A, Hantz, S, Marquant, R, Champier, G, Alain, S, Morellet, N, Bouaziz, S. 登録日 2009-08-18 公開日 2010-06-09 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Insight into the structure of the pUL89 C-terminal domain of the human cytomegalovirus terminase complex. Proteins, 78, 2010
6D5F	Cryo-EM reconstruction of membrane-enveloped filamentous virus SFV1 (Sulfolobus filamentous virus 1) 分子名称: DNA (336-MER), Fimbrial protein 著者 Wang, F, Osinski, T, Liu, Y, Krupovic, M, Prangishvili, D, Egelman, E.H. 登録日 2018-04-19 公開日 2018-08-29 最終更新日 2020-01-08 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile. Nat Commun, 9, 2018
3G7E	Crystal structure of E. coli Gyrase B co-complexed with PROP-2-YN-1-YL {[5-(4-PIPERIDIN-1-YL-2-PYRIDIN-3-YL-1,3-THIAZOL-5-YL)-1H-PYRAZOL-3-YL]METHYL}CARBAMATE inhibitor 分子名称: DNA gyrase subunit B, prop-2-yn-1-yl {[5-(4-piperidin-1-yl-2-pyridin-3-yl-1,3-thiazol-5-yl)-1H-pyrazol-3-yl]methyl}carbamate 著者 Wei, Y, Charifson, P. 登録日 2009-02-09 公開日 2010-02-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Discovery of pyrazolthiazoles as novel and potent inhibitors of bacterial gyrase. Bioorg.Med.Chem.Lett., 20, 2010
3G7B	Staphylococcus aureus Gyrase B co-complex with METHYL ({5-[4-(4-HYDROXYPIPERIDIN-1-YL)-2-PHENYL-1,3-THIAZOL-5-YL]-1H-PYRAZOL-3-YL}METHYL)CARBAMATE inhibitor 分子名称: DNA gyrase subunit B, methyl ({5-[4-(4-hydroxypiperidin-1-yl)-2-phenyl-1,3-thiazol-5-yl]-1H-pyrazol-3-yl}methyl)carbamate 著者 Wei, Y, Charisfon, P. 登録日 2009-02-09 公開日 2010-02-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Discovery of pyrazolthiazoles as novel and potent inhibitors of bacterial gyrase. Bioorg.Med.Chem.Lett., 20, 2010
7YQH	Cryo-EM structure of 8-subunit Smc5/6 分子名称: DNA repair protein KRE29, E3 SUMO-protein ligase MMS21, Non-structural maintenance of chromosome element 3, ... 著者 Qian, L, Jun, Z, Xiang, Z, Tong, C, Zhaoning, W, Duo, J, Zhenguo, C, Lanfeng, W. 登録日 2022-08-07 公開日 2024-01-31 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (5.6 Å) 主引用文献 Cryo-EM structures of Smc5/6 in multiple states reveal its assembly and functional mechanisms. Nat.Struct.Mol.Biol., 2024
8HR1	Cryo-EM structure of SSX1 bound to the unmodified nucleosome at a resolution of 3.02 angstrom 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-K, ... 著者 Zebin, T, Ai, H.S, Ziyu, X, Man, P, Liu, L. 登録日 2022-12-14 公開日 2023-09-13 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.02 Å) 主引用文献 Synovial sarcoma X breakpoint 1 protein uses a cryptic groove to selectively recognize H2AK119Ub nucleosomes. Nat.Struct.Mol.Biol., 31, 2024
1XU4	ATPASE IN COMPLEX WITH AMP-PNP, MAGNESIUM AND POTASSIUM CO-F 分子名称: DNA repair and recombination protein radA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Wu, Y, Qian, X, He, Y, Moya, I.A, Luo, Y. 登録日 2004-10-25 公開日 2004-11-16 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of an ATPase-active form of Rad51 homolog from Methanococcus voltae. Insights into potassium dependence J.Biol.Chem., 280, 2005
5A6D	Proliferating Cell Nuclear Antigen, PCNA, from Thermococcus gammatolerans 分子名称: DNA POLYMERASE SLIDING CLAMP 著者 Venancio-Landeros, A, Cardona-Felix, C.S, Rudino-Pinera, E. 登録日 2015-06-25 公開日 2016-07-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Cloning, recombinant production and crystallographic structure of Proliferating Cell Nuclear Antigen from radioresistant archaeon Thermococcus gammatolerans. Biochem Biophys Rep, 8, 2016
2JWQ	G-quadruplex recognition by quinacridines: a SAR, NMR and Biological study 分子名称: DNA (5'-D(*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3'), N,N'-(dibenzo[b,j][1,7]phenanthroline-2,10-diyldimethanediyl)dipropan-1-amine 著者 Hounsou, C, Guittat, L, Monchaud, D, Jourdan, M, Saettel, N, Mergny, J.L, Teulade-Fichou, M. 登録日 2007-10-23 公開日 2008-03-25 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 G-Quadruplex Recognition by Quinacridines: a SAR, NMR, and Biological Study ChemMedChem, 2, 2007

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