PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

---

2VSF	Structure of XPD from Thermoplasma acidophilum 分子名称: CALCIUM ION, DNA REPAIR HELICASE RAD3 RELATED PROTEIN, IRON/SULFUR CLUSTER 著者 Kuper, J, Wolski, S.C, Truglio, J.J, Kisker, C. 登録日 2008-04-23 公開日 2008-07-08 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal Structure of the Fes Cluster-Containing Nucleotide Excision Repair Helicase Xpd. Plos Biol., 6, 2008
7VZ4	Cryo-EM structure of human nucleosome core particle composed of the Widom 601L DNA sequence 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Takizawa, Y, Ho, C.-H, Sato, S, Danev, R, Kurumizaka, H. 登録日 2021-11-15 公開日 2023-05-17 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (1.89 Å) 主引用文献 Methods for High Resolution Cryo-EM Analyses of Nucleosomes To Be Published
7DO1	Solution structure of a heteromolecular telomeric (3+1) G-quadruplex containing right loop progression 分子名称: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), DNA (5'-D(*TP*TP*AP*GP*GP*G)-3') 著者 Fu, W.Q, Jing, H.T, Zhang, N. 登録日 2020-12-11 公開日 2021-09-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Two coexisting pseudo-mirror heteromolecular telomeric G-quadruplexes in opposite loop progressions differentially recognized by a low equivalent of Thioflavin T. Nucleic Acids Res., 49, 2021
2B2U	Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2 分子名称: Chromodomain-helicase-DNA-binding protein 1, Histone H3 著者 Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. 登録日 2005-09-19 公開日 2005-12-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
8BV6	An i-motif domain able to undergo pH-dependent conformational transitions (neutral structure) 分子名称: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*CP*GP*T)-3') 著者 Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C. 登録日 2022-12-01 公開日 2023-02-22 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs. J.Am.Chem.Soc., 145, 2023
2B2V	Crystal structure analysis of human CHD1 chromodomains 1 and 2 bound to histone H3 resi 1-15 MeK4 分子名称: Chromodomain-helicase-DNA-binding protein 1, Histone H3 著者 Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. 登録日 2005-09-19 公開日 2005-12-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
2B2Y	Tandem chromodomains of human CHD1 分子名称: Chromodomain-helicase-DNA-binding protein 1 著者 Flanagan IV, J.F, Mi, L.-Z, Chruszcz, M, Cymborowski, M, Clines, K.L, Kim, Y, Minor, W, Rastinejad, F, Khorasanizadeh, S. 登録日 2005-09-19 公開日 2005-12-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 2005
6KN4	HUMAN PARALLEL STRANDED 7-MER G-QUADRUPLEX COMPLEXED WITH 2 ADRIAMYCIN (DM2) MOLECULES 分子名称: DNA (5'-D(*TP*TP*AP*GP*GP*GP*T)-3'), DOXORUBICIN 著者 Barthwal, R, Raje, S, Pandav, K. 登録日 2019-08-03 公開日 2020-03-18 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural basis for stabilization of human telomeric G-quadruplex [d-(TTAGGGT)] 4 by anticancer drug adriamycin. J.Biomol.Struct.Dyn., 39, 2021
6UPH	Structure of a Yeast Centromeric Nucleosome at 2.7 Angstrom resolution 分子名称: DNA (119-MER), Histone H2A, Histone H2B.1, ... 著者 Migl, D, Kschonsak, M, Arthur, C.P, Khin, Y, Harrison, S.C, Ciferri, C, Dimitrova, Y.N. 登録日 2019-10-17 公開日 2019-11-06 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Cryoelectron Microscopy Structure of a Yeast Centromeric Nucleosome at 2.7 angstrom Resolution. Structure, 28, 2020
8F5C	Mirror-image DNA containing 2'-OMe-L-dC modification 分子名称: DNA (5'-D(*(0DG))-R(P*(XE6))-D(P*(0DG)P*(0DT)P*(0DA)P*(0DC)P*(0DG)P*(0DC))-3'), MAGNESIUM ION 著者 Zhang, W, Dantsu, Y. 登録日 2022-11-13 公開日 2023-09-20 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 Synthesis and Structural Characterization of 2'-Deoxy-2'-Methoxy-L-Cytidine Nucleic Acids Chemistryselect, 2023
3WVH	Time-Resolved Crystal Structure of HindIII with 25sec soaking 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, MANGANESE (II) ION, ... 著者 Kawamura, T, Kobayashi, T, Watanabe, N. 登録日 2014-05-21 公開日 2015-04-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Analysis of the HindIII-catalyzed reaction by time-resolved crystallography Acta Crystallogr.,Sect.D, 71, 2015
6PNK	Crystal structure of the G-quadruplex formed by (GGGTT)3GGG in complex with N-methylmesoporphryin IX 分子名称: DNA (5'-D(P*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*G)-3'), FORMIC ACID, N-METHYLMESOPORPHYRIN, ... 著者 Yatsunyk, L.A, Lin, L.Y. 登録日 2019-07-02 公開日 2020-07-08 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Biophysical and X-ray structural studies of the (GGGTT)3GGG G-quadruplex in complex with N-methyl mesoporphyrin IX. Plos One, 15, 2020
3WVI	Time-Resolved Crystal Structure of HindIII with 40 sec soaking 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, MANGANESE (II) ION, ... 著者 Kawamura, T, Kobayashi, T, Watanabe, N. 登録日 2014-05-21 公開日 2015-04-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Analysis of the HindIII-catalyzed reaction by time-resolved crystallography Acta Crystallogr.,Sect.D, 71, 2015
6FC9	The 1,8-bis(aminomethyl)anthracene and Quadruplex-duplex junction complex 分子名称: DNA (27-MER), [8-(azaniumylmethyl)anthracen-1-yl]methylazanium 著者 Santana, A, Serrano, I, Montalvillo-Jimenez, L, Corzana, F, Bastida, A, Jimenez-Barbero, J, Gonzalez, C, Asensio, J.L. 登録日 2017-12-20 公開日 2019-04-10 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 De Novo Design of Selective Quadruplex-Duplex Junction Ligands and Structural Characterisation of Their Binding Mode: Targeting the G4 Hot-Spot. Chemistry, 2020
8IQI	Structure of Full-Length AsfvPrimPol in Complex-Form 分子名称: DNA (32-MER), MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Shao, Z.W, Su, S.C, Gan, J.H. 登録日 2023-03-16 公開日 2023-07-26 最終更新日 2023-11-29 実験手法 ELECTRON MICROSCOPY (3.32 Å) 主引用文献 Structures and implications of the C962R protein of African swine fever virus. Nucleic Acids Res., 51, 2023
8I4V	Cryo-EM structure of 5-subunit Smc5/6 arm region 分子名称: DNA repair protein KRE29, E3 SUMO-protein ligase MMS21, Structural maintenance of chromosomes protein 5, ... 著者 Qian, L, Jun, Z, Xiang, Z, Cheng, T, Zhaoning, W, Zhenguo, C, Wang, L. 登録日 2023-01-21 公開日 2024-06-26 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (5.97 Å) 主引用文献 Cryo-EM structures of Smc5/6 in multiple states reveal its assembly and functional mechanisms. Nat.Struct.Mol.Biol., 2024
8I4W	Cryo-EM structure of 5-subunit Smc5/6 head region 分子名称: DNA repair protein KRE29, Non-structural maintenance of chromosome element 5, Structural maintenance of chromosomes protein 5, ... 著者 Qian, L, Jun, Z, Xiang, Z, Zhaoning, W, Cheng, T, Duo, J, Zhenguo, C, Wang, L. 登録日 2023-01-21 公開日 2024-06-26 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (6.01 Å) 主引用文献 Cryo-EM structures of Smc5/6 in multiple states reveal its assembly and functional mechanisms. Nat.Struct.Mol.Biol., 2024
419D	OCTAMER 5'-R(*GP*UP*AP*UP*AP*CP*A)-D(P*C)-3' WITH SIX WATSON-CRICK BASE-PAIRS AND TWO 3' OVERHANG RESIDUES 分子名称: DNA/RNA (5'-R(*GP*UP*AP*UP*AP*CP*A)-D(P*C)-3') 著者 Mitra, S.M, Shi, K, Biswas, R, Sundaralingam, M. 登録日 1998-08-12 公開日 2000-05-29 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structure of the octamer [r(guauaca)dC]2 with six Watson-Crick base-pairs and two 3' overhang residues. J.Mol.Biol., 299, 2000
8BQY	An i-motif domain able to undergo pH-dependent conformational transitions (acidic structure) 分子名称: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*(DNR)P*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*(DNR)P*CP*GP*T)-3') 著者 Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C. 登録日 2022-11-22 公開日 2023-02-22 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs. J.Am.Chem.Soc., 145, 2023
3WVG	Time-Resolved Crystal Structure of HindIII with 0sec soaking 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, SODIUM ION, ... 著者 Kawamura, T, Kobayashi, T, Watanabe, N. 登録日 2014-05-21 公開日 2015-04-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Analysis of the HindIII-catalyzed reaction by time-resolved crystallography Acta Crystallogr.,Sect.D, 71, 2015
2L5U	Structure of the first PHD finger (PHD1) from CHD4 (Mi2b) 分子名称: Chromodomain-helicase-DNA-binding protein 4, ZINC ION 著者 Mansfield, R.E, Kwan, A.H, Mackay, J.P. 登録日 2010-11-08 公開日 2011-01-19 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Plant Homeodomain (PHD) Fingers of CHD4 Are Histone H3-binding Modules with Preference for Unmodified H3K4 and Methylated H3K9 J.Biol.Chem., 286, 2011
4CGY	Crystal structure of the human topoisomerase III alpha-RMI1 complex 分子名称: DNA TOPOISOMERASE 3-ALPHA, MAGNESIUM ION, RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 著者 Bocquet, N, Bunker, R.D, Thoma, N.H. 登録日 2013-11-27 公開日 2014-02-12 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Structural and Mechanistic Insight Into Holliday-Junction Dissolution by Topoisomerase Iiialpha and Rmi1 Nat.Struct.Mol.Biol., 21, 2014
8HQS	Cryo-EM structure of 8-subunit Smc5/6 head region 分子名称: DNA repair protein KRE29, Non-structural maintenance of chromosome element 3, Non-structural maintenance of chromosome element 4, ... 著者 Qian, L, Jun, Z, Xiang, Z, Tong, C, Wang, Z, Duo, J, Zhenguo, C, Wang, L. 登録日 2022-12-14 公開日 2024-06-19 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structures of Smc5/6 in multiple states reveal its assembly and functional mechanisms. Nat.Struct.Mol.Biol., 2024
7VBM	The mouse nucleosome structure containing H3mm18 aided by PL2-6 scFv 分子名称: DNA (126-MER), Histone H2A type 1-B, Histone H2B type 3-A, ... 著者 Hirai, S, Takizawa, Y, Kujirai, T, Kurumizaka, H. 登録日 2021-08-31 公開日 2022-01-19 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant. Nucleic Acids Res., 50, 2022
1SZP	A Crystal Structure of the Rad51 Filament 分子名称: DNA repair protein RAD51, SULFATE ION 著者 Conway, A.B, Lynch, T.W, Zhang, Y, Fortin, G.S, Symington, L.S, Rice, P.A. 登録日 2004-04-06 公開日 2004-07-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.25 Å) 主引用文献 Crystal structure of a Rad51 filament. Nat.Struct.Mol.Biol., 11, 2004

<534535536537538539540541542543544545546547548549>