PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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4OSH	Crystal structure of the TAL effector dHax3 with NI RVD at 2.2 angstrom resolution 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.201 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
8H02	Crystal structure of Synechococcus elongatus PCC 7942 RNA polymerase SI3-tail 分子名称: DNA-directed RNA polymerase subunit beta' 著者 Shen, L.Q, Zhang, Y. 登録日 2022-09-27 公開日 2023-04-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.552 Å) 主引用文献 An SI3-sigma arch stabilizes cyanobacteria transcription initiation complex. Proc.Natl.Acad.Sci.USA, 120, 2023
7N8N	Melbournevirus nucleosome like particle 分子名称: DNA (147-MER), Histone H2B-H2A doublet, Histone H4-H3 doublet 著者 Liu, Y, Toner, C.M, Zhou, K, Bowerman, S, Luger, K. 登録日 2021-06-15 公開日 2021-08-04 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.89 Å) 主引用文献 Virus-encoded histone doublets are essential and form nucleosome-like structures. Cell, 184, 2021
1E0J	gp4d helicase from phage T7 ADPNP complex 分子名称: DNA HELICASE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Singleton, M.R, Sawaya, M.R, Ellenberger, T, Wigley, D.B. 登録日 2000-03-30 公開日 2000-06-09 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal Structure of T7 Gene 4 Ring Helicase Indicates a Mechanism for Sequential Hydrolysis of Nucleotides Cell(Cambridge,Mass.), 101, 2000
6PX3	Set2 bound to nucleosome 分子名称: DNA (145-MER), Histone H2B 1.1, Histone H3, ... 著者 Halic, M, Bilokapic, S. 登録日 2019-07-24 公開日 2019-08-28 最終更新日 2019-09-04 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Nucleosome and ubiquitin position Set2 to methylate H3K36. Nat Commun, 10, 2019
5OPH	G-quadruplex structure of DNA oligonucleotide containing GGGGCC repeats linked to ALS and FTD 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3') 著者 Brcic, J, Plavec, J. 登録日 2017-08-09 公開日 2018-08-29 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism. Nucleic Acids Res., 46, 2018
5OXV	Structure of the 4_601_157 tetranucleosome (C2 form) 分子名称: DNA STRAND 1 (601-based sequence model), DNA STRAND 2 (601-based sequence model), Histone H2A, ... 著者 Ekundayo, B, Schalch, T. 登録日 2017-09-07 公開日 2017-10-11 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (6.721 Å) 主引用文献 Capturing Structural Heterogeneity in Chromatin Fibers. J. Mol. Biol., 429, 2017
8IEJ	RNF20-RNF40/hRad6A-Ub/nucleosome complex 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B, ... 著者 Ai, H, Deng, Z, Sun, M, Du, Y, Pan, M, Liu, L. 登録日 2023-02-15 公開日 2023-09-06 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (3.12 Å) 主引用文献 Mechanistic insights into nucleosomal H2B monoubiquitylation mediated by yeast Bre1-Rad6 and its human homolog RNF20/RNF40-hRAD6A. Mol.Cell, 83, 2023
8SMW	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 1) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-04-26 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8SMX	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 2) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-04-26 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8SMY	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 3) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-04-26 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8SMZ	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (Class 4) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-04-26 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8SN0	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 5) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-04-26 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8SN1	Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5c chemically conjugated to histone H2A. No density for Ub.) (class 6) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-04-26 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
3WVH	Time-Resolved Crystal Structure of HindIII with 25sec soaking 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, MANGANESE (II) ION, ... 著者 Kawamura, T, Kobayashi, T, Watanabe, N. 登録日 2014-05-21 公開日 2015-04-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Analysis of the HindIII-catalyzed reaction by time-resolved crystallography Acta Crystallogr.,Sect.D, 71, 2015
4OSM	Crystal structure of the S505H mutant of TAL effector dHax3 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.454 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
4OSI	Crystal structure of the TAL effector dHax3 with NI RVD at 2.8 angstrom resolution 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.849 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
3WVI	Time-Resolved Crystal Structure of HindIII with 40 sec soaking 分子名称: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'), GLYCEROL, MANGANESE (II) ION, ... 著者 Kawamura, T, Kobayashi, T, Watanabe, N. 登録日 2014-05-21 公開日 2015-04-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Analysis of the HindIII-catalyzed reaction by time-resolved crystallography Acta Crystallogr.,Sect.D, 71, 2015
4OST	Crystal structure of the S505C mutant of TAL effector dHax3 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.996 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
8IHL	Overlapping tri-nucleosome 分子名称: DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H. 登録日 2023-02-23 公開日 2024-01-17 最終更新日 2024-01-24 実験手法 ELECTRON MICROSCOPY (7.64 Å) 主引用文献 Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties. Commun Biol, 7, 2024
4OSK	Crystal structure of TAL effector reveals the recognition between asparagine and guanine 分子名称: DNA (5'-D(*AP*GP*TP*CP*TP*AP*GP*TP*AP*GP*TP*TP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*AP*AP*CP*TP*AP*CP*TP*AP*GP*AP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.398 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
4OT0	Crystal structure of the S505T mutant of TAL effector dHax3 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.491 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
4OSS	Crystal structure of the S505Q mutant of TAL effector dHax3 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*CP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*GP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.397 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
4OSL	Crystal structure of TAL effector reveals the recognition between histidine and guanine 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*CP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*GP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3, ... 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.447 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014
4OT3	Crystal structure of the S505L mutant of TAL effector dHax3 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*TP*AP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*TP*AP*TP*CP*TP*CP*TP*CP*T)-3'), Hax3 著者 Deng, D, Wu, J.P, Yan, C.Y, Pan, X.J, Yan, N. 登録日 2014-02-13 公開日 2014-05-28 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.944 Å) 主引用文献 Revisiting the TALE repeat Protein Cell, 5, 2014

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