PDB: 97310 件ウェブページステータス検索Chemie searchBIRD

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8BTR	Giardia Ribosome in PRE-T Hybrid State (D2) 分子名称: 5.8S rRNA, 5S rRNA, Large Subunit rRNA, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-29 公開日 2023-03-22 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
8BR8	Giardia ribosome in POST-T state (A1) 分子名称: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-22 公開日 2023-03-15 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
8BRM	Giardia ribosome in POST-T state, no E-site tRNA (A6) 分子名称: 5.8S rRNA, 5S rRNA, Large Subunit rRNA, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-23 公開日 2023-03-15 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
1EFK	STRUCTURE OF HUMAN MALIC ENZYME IN COMPLEX WITH KETOMALONATE 分子名称: ALPHA-KETOMALONIC ACID, MAGNESIUM ION, MALIC ENZYME, ... 著者 Yang, Z, Floyd, D.L, Loeber, G, Tong, L. 登録日 2000-02-09 公開日 2000-03-08 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of a closed form of human malic enzyme and implications for catalytic mechanism. Nat.Struct.Biol., 7, 2000
8BSI	Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1) 分子名称: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... 著者 Majumdar, S, Emmerich, A.G, Sanyal, S. 登録日 2022-11-25 公開日 2023-03-15 最終更新日 2023-05-03 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
4B1V	Structure of the Phactr1 RPEL-N domain bound to G-actin 分子名称: 1,2-ETHANEDIOL, ACTIN, ALPHA SKELETAL MUSCLE, ... 著者 Mouilleron, S, Wiezlak, M, O'Reilly, N, Treisman, R, McDonald, N.Q. 登録日 2012-07-12 公開日 2012-11-07 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structures of the Phactr1 RPEL domain and RPEL motif complexes with G-actin reveal the molecular basis for actin binding cooperativity. Structure, 20, 2012
4B1W	Structure of the Phactr1 RPEL-2 domain bound to actin 分子名称: ACTIN, ALPHA SKELETAL MUSCLE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Mouilleron, S, Wiezlak, M, O'Reilly, N, Treisman, R, McDonald, N.Q. 登録日 2012-07-12 公開日 2013-07-31 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structures of the Phactr1 RPEL domain and RPEL motif complexes with G-actin reveal the molecular basis for actin binding cooperativity. Structure, 20, 2012
1EPH	THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS 分子名称: EPIDERMAL GROWTH FACTOR 著者 Kohda, D, Inagaki, F. 登録日 1992-03-24 公開日 1994-01-31 最終更新日 2017-11-29 実験手法 SOLUTION NMR 主引用文献 Three-dimensional nuclear magnetic resonance structures of mouse epidermal growth factor in acidic and physiological pH solutions. Biochemistry, 31, 1992
6XIR	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress 分子名称: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Zhou, Y, Bartesaghi, A, Silva, G.M. 登録日 2020-06-21 公開日 2020-08-26 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proc.Natl.Acad.Sci.USA, 117, 2020
4B1X	Structure of the Phactr1 RPEL-2 bound to G-actin 分子名称: ACTIN, ALPHA SKELETAL MUSCLE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Mouilleron, S, Wiezlak, M, O'Reilly, N, Treisman, R, McDonald, N.Q. 登録日 2012-07-12 公開日 2013-07-31 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of the Phactr1 RPEL domain and RPEL motif complexes with G-actin reveal the molecular basis for actin binding cooperativity. Structure, 20, 2012
1RW9	Crystal structure of the Arthrobacter aurescens chondroitin AC lyase 分子名称: PHOSPHATE ION, SODIUM ION, chondroitin AC lyase 著者 Lunin, V.V, Li, Y, Linhardt, R.J, Miyazono, H, Kyogashima, M, Kaneko, T, Bell, A.W, Cygler, M. 登録日 2003-12-16 公開日 2004-04-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism J.Mol.Biol., 337, 2004
1E5C	Internal xylan binding domain from C. fimi Xyn10A, R262G mutant 分子名称: XYLANASE D 著者 Simpson, P.J, Hefang, X, Bolam, D.N, Gilbert, H.J, Williamson, M.P. 登録日 2000-07-24 公開日 2001-05-25 最終更新日 2018-10-24 実験手法 SOLUTION NMR 主引用文献 The Structural Basis for the Ligand Specificity of Family 2 Carbohydrate Binding Nodules J.Biol.Chem., 275, 2000
1ESY	NMR STRUCTURE OF STEM LOOP SL2 OF THE HIV-1 PSI RNA PACKAGING SIGNAL REVEALS A NOVEL A-U-A BASE-TRIPLE PLATFORM 分子名称: RNA (5'-R(P*GP*GP*CP*GP*AP*CP*UP*GP*GP*UP*GP*AP*GP*UP*AP*CP*GP*CP*C)-3') 著者 Amarasinghe, G.K, De Guzman, R.N, Turner, R.B, Summers, M.F. 登録日 2000-04-11 公開日 2000-05-31 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform. J.Mol.Biol., 299, 2000
5ADH	INTERDOMAIN MOTION IN LIVER ALCOHOL DEHYDROGENASE. STRUCTURAL AND ENERGETIC ANALYSIS OF THE HINGE BENDING MODE 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5-DIPHOSPHORIBOSE, APO-LIVER ALCOHOL DEHYDROGENASE, ... 著者 Eklund, H, Jones, T.A. 登録日 1984-01-16 公開日 1984-07-18 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode. J.Biol.Chem., 261, 1986
4B1Y	Structure of the Phactr1 RPEL-3 bound to G-actin 分子名称: ACTIN, ALPHA SKELETAL MUSCLE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Mouilleron, S, Wiezlak, M, O'Reilly, N, Treisman, R, McDonald, N.Q. 登録日 2012-07-12 公開日 2013-07-31 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Structures of the Phactr1 RPEL domain and RPEL motif complexes with G-actin reveal the molecular basis for actin binding cooperativity. Structure, 20, 2012
1RWF	Crystal structure of Arthrobacter aurescens chondroitin AC lyase in complex with chondroitin tetrasaccharide 分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-2,6-anhydro-3-deoxy-L-xylo-hexonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, PHOSPHATE ION, SODIUM ION, ... 著者 Lunin, V.V, Li, Y, Miyazono, H, Kyogashima, M, Bell, A.W, Cygler, M. 登録日 2003-12-16 公開日 2004-04-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism J.Mol.Biol., 337, 2004
1RWG	Crystal structure of Arthrobacter aurescens chondroitin AC lyase in complex with chondroitin tetrasaccharide 分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-2,6-anhydro-3-deoxy-L-xylo-hexonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, PHOSPHATE ION, SODIUM ION, ... 著者 Lunin, V.V, Li, Y, Miyazono, H, Kyogashima, M, Bell, A.W, Cygler, M. 登録日 2003-12-16 公開日 2004-04-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism J.Mol.Biol., 337, 2004
8EVT	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (2.2 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
5MQF	Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ATP-dependent RNA helicase DHX8, Cell division cycle 5-like protein, ... 著者 Bertram, K, Hartmuth, K, Kastner, B. 登録日 2016-12-20 公開日 2017-03-22 最終更新日 2018-11-21 実験手法 ELECTRON MICROSCOPY (5.9 Å) 主引用文献 Cryo-EM structure of a human spliceosome activated for step 2 of splicing. Nature, 542, 2017
5XY3	Large subunit of Trichomonas vaginalis ribosome 分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Li, Z, Guo, Q, Zheng, L, Ji, Y, Xie, Y, Lai, D, Lun, Z, Suo, X, Gao, N. 登録日 2017-07-06 公開日 2017-08-30 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii Cell Res., 27, 2017
6XIQ	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress 分子名称: 18S ribosomal RNA, 35S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Zhou, Y, Bartesaghi, A, Silva, G.M. 登録日 2020-06-21 公開日 2020-08-26 最終更新日 2020-09-23 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress. Proc.Natl.Acad.Sci.USA, 117, 2020
8EVP	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-20 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.38 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8EWC	Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II 分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... 著者 Zhao, Y, Rai, J, Li, H. 登録日 2022-10-22 公開日 2023-09-06 実験手法 ELECTRON MICROSCOPY (2.45 Å) 主引用文献 Regulation of translation by ribosomal RNA pseudouridylation. Sci Adv, 9, 2023
8G83	Structure of NAD+ consuming protein Acinetobacter baumannii TIR domain 分子名称: NAD(+) hydrolase AbTIR 著者 Klontz, E.H, Wang, Y, Glendening, G, Carr, J, Tsibouris, T, Buddula, S, Nallar, S, Soares, A, Snyder, G.A. 登録日 2023-02-17 公開日 2023-10-11 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.03 Å) 主引用文献 The structure of NAD + consuming protein Acinetobacter baumannii TIR domain shows unique kinetics and conformations. J.Biol.Chem., 299, 2023
5YZG	The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Zhan, X, Yan, C, Zhang, X, Lei, J, Shi, Y. 登録日 2017-12-14 公開日 2018-08-08 最終更新日 2020-10-14 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Structure of a human catalytic step I spliceosome Science, 359, 2018

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