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3EMT
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BU of 3emt by Molmil
Crystal structure of the mimivirus NDK +Kpn-R107G double mutant complexed with dGDP
分子名称: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-09-25
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3ETM
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BU of 3etm by Molmil
Crystal structure of the mimivirus NDK +KPN-N62L-R107G triple mutant complexed with CDP
分子名称: CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-10-08
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3ENA
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BU of 3ena by Molmil
Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dGDP
分子名称: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-09-25
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3EVO
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BU of 3evo by Molmil
Crystal structure of the Mimivirus NDK +Kpn mutant complexed with dTDP
分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-10-13
公開日2009-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3EVW
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BU of 3evw by Molmil
Crystal structure of the Mimivirus NDK R107G mutant complexed with dTDP
分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-10-13
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3FCW
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BU of 3fcw by Molmil
Crystal structure of the Mimivirus NDK N62L mutant complexed with UDP
分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, URIDINE-5'-DIPHOSPHATE
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-11-23
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3FBF
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BU of 3fbf by Molmil
Crystal structure of the Mimivirus NDK N62L mutant complexed with dTDP
分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, THYMIDINE-5'-DIPHOSPHATE
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-11-19
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3FBE
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BU of 3fbe by Molmil
Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-11-19
公開日2009-06-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3FBC
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BU of 3fbc by Molmil
Crystal structure of the Mimivirus NDK N62L-R107G double mutant complexed with dTDP
分子名称: MAGNESIUM ION, Nucleoside diphosphate kinase, PHOSPHATE ION, ...
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-11-19
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3FC9
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BU of 3fc9 by Molmil
Crystal structure of the Mimivirus NDK +Kpn-N62L double mutant complexed with CDP
分子名称: CYTIDINE-5'-DIPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-11-21
公開日2009-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
3FCV
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BU of 3fcv by Molmil
Crystal structure of the Mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with dUDP
分子名称: DEOXYURIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, Nucleoside diphosphate kinase
著者Jeudy, S, Lartigue, A, Claverie, J.M, Abergel, C.
登録日2008-11-23
公開日2009-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
1WKK
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BU of 1wkk by Molmil
Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, nucleoside diphosphate kinase
著者Takeishi, S, Nakagawa, N, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-06-01
公開日2005-08-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8
To be Published
5U9W
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BU of 5u9w by Molmil
Structure of CNTnw N149L in the intermediate 3 state
分子名称: 2-{[(4-O-alpha-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-2-octyldecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside, Nucleoside permease
著者Hirschi, M, Johnson, Z.L, Lee, S.-Y.
登録日2016-12-18
公開日2017-04-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.555 Å)
主引用文献Visualizing multistep elevator-like transitions of a nucleoside transporter.
Nature, 545, 2017
5GM6
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BU of 5gm6 by Molmil
Cryo-EM structure of the activated spliceosome (Bact complex) at 3.5 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cold sensitive U2 snRNA suppressor 1, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Yan, C, Wan, R, Bai, R, Huang, G, Shi, Y.
登録日2016-07-12
公開日2016-09-21
最終更新日2024-11-27
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structure of a yeast activated spliceosome at 3.5 angstrom resolution
Science, 353, 2016
5GMK
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BU of 5gmk by Molmil
Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution
分子名称: 5'-Exon, 5'-Splicing Site, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Wan, R, Yan, C, Bai, R, Huang, G, Shi, Y.
登録日2016-07-14
公開日2016-08-17
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of a yeast catalytic step I spliceosome at 3.4 angstrom resolution
Science, 353, 2016
5LF8
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BU of 5lf8 by Molmil
Human Nucleoside diphosphate-linked moiety X motif 17 (NUDT17)
分子名称: ETHYL MERCURY ION, Nucleoside diphosphate-linked moiety X motif 17, PHOSPHATE ION
著者Mathea, S, Tallant, C, Salah, E, Wang, D, Velupillai, S, Nowak, R, Oerum, S, Krojer, T, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Huber, K, Structural Genomics Consortium (SGC)
登録日2016-06-30
公開日2017-08-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献Human Nucleoside diphosphate-linked moiety X motif 17 (NUDT17)
To Be Published
9EOZ
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BU of 9eoz by Molmil
Human OGG1 bound to a nucleosome core particle with 8-oxodGuo lesion at SHL6.0
分子名称: Histone H2A type 1-C, Histone H2B type 1-C/E/F/G/I, Histone H3.3, ...
著者Ren, M, Gut, F, Fan, Y, Hopfner, K.-P, Zhou, C.
登録日2024-03-16
公開日2024-11-06
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for human OGG1 processing 8-oxodGuo within nucleosome core particles.
Nat Commun, 15, 2024
8TYV
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BU of 8tyv by Molmil
Crystal structure of the SPX domain of XPR1 in complex with IP8
分子名称: (1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl bis[trihydrogen (diphosphate)], Solute carrier family 53 member 1
著者Wang, H, Shears, S.B.
登録日2023-08-25
公開日2024-06-12
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Homeostatic coordination of cellular phosphate uptake and efflux requires an organelle-based receptor for the inositol pyrophosphate IP8.
Cell Rep, 43, 2024
8TYU
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BU of 8tyu by Molmil
High-resolution crystal structure of the SPX domain of XPR1 at 1.4 angstroms
分子名称: Solute carrier family 53 member 1
著者Wang, H, Shears, S.B.
登録日2023-08-25
公開日2024-06-12
最終更新日2024-12-25
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Homeostatic coordination of cellular phosphate uptake and efflux requires an organelle-based receptor for the inositol pyrophosphate IP8.
Cell Rep, 43, 2024
5WSG
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BU of 5wsg by Molmil
Cryo-EM structure of the Catalytic Step II spliceosome (C* complex) at 4.0 angstrom resolution
分子名称: 3'-exon-intron, 3'-intron-lariat, 5'-exon, ...
著者Yan, C, Wan, R, Bai, R, Huang, G, Shi, Y.
登録日2016-12-07
公開日2017-01-25
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure of a yeast step II catalytically activated spliceosome
Science, 355, 2017
6NE3
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BU of 6ne3 by Molmil
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h bound at SHL-2
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (156-MER), Histone H2A type 1, ...
著者Armache, J.-P, Gamarra, N, Johnson, S.L, Leonard, J.D, Wu, S, Narlikar, G.N, Cheng, Y.
登録日2018-12-16
公開日2019-07-17
最終更新日2025-06-04
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome.
Elife, 8, 2019
5U7P
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BU of 5u7p by Molmil
Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Trifolium repens
分子名称: Apyrase, PHOSPHATE ION
著者Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L.
登録日2016-12-12
公開日2017-05-31
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism.
Protein Sci., 26, 2017
5U7W
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BU of 5u7w by Molmil
Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Trifolium repens in complex with adenine and phosphate
分子名称: ADENINE, Apyrase, PHOSPHATE ION
著者Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L.
登録日2016-12-12
公開日2017-05-31
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism.
Protein Sci., 26, 2017
5U7X
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BU of 5u7x by Molmil
Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Vigna unguiculata subsp. cylindrica (Dolichos biflorus) in complex with phosphate and manganese
分子名称: MANGANESE (II) ION, Nod factor binding lectin-nucleotide phosphohydrolase, PHOSPHATE ION
著者Cumming, M.H, Summers, E.L, Oulavallickal, T, Roberts, N, Arcus, V.L.
登録日2016-12-12
公開日2017-05-31
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism.
Protein Sci., 26, 2017
5U2I
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BU of 5u2i by Molmil
Crystal structure of a nucleoside diphosphate kinase from Naegleria fowleri
分子名称: 1,2-ETHANEDIOL, FORMIC ACID, MAGNESIUM ION, ...
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2016-11-30
公開日2017-01-25
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal structure of a nucleoside diphosphate kinase from Naegleria fowleri
to be published

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件を2025-07-09に公開中

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