PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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6IET	The crystal structure of TRIM66 PHD-Bromo domain 分子名称: Tripartite motif-containing protein 66, ZINC ION 著者 Chen, J. 登録日 2018-09-17 公開日 2019-09-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.101 Å) 主引用文献 TRIM66 reads unmodified H3R2K4 and H3K56ac to respond to DNA damage in embryonic stem cells. Nat Commun, 10, 2019
3ZHM	N-terminal domain of the CI repressor from bacteriophage TP901-1 in complex with the OL2 operator half-site 分子名称: 5'-D(*AP*CP*GP*TP*GP*AP*AP*CP*TP*TP*GP*CP*AP*CP *TP*TP*GP*A)-3', 5'-D(*AP*GP*TP*TP*CP*AP*CP*GP*TP*TP*CP*AP*AP*GP *TP*GP*CP*A)-3', CI 著者 Frandsen, K.H, Rasmussen, K.K, Poulsen, J.N, Lo Leggio, L. 登録日 2012-12-22 公開日 2013-12-25 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Binding of the N-Terminal Domain of the Lactococcal Bacteriophage Tp901-1 Ci Repressor to its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. Biochemistry, 52, 2013
2GK4	The Crystal Structure of the DNA/Pantothenate Metabolism Flavoprotein from Streptococcus pneumoniae 分子名称: GLYCEROL, conserved hypothetical protein 著者 Kim, Y, Zhou, M, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-03-31 公開日 2006-05-02 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 The Crystal Structure of the DNA/Pantothenate Metabolism Flavoprotein from Streptococcus pneumoniae To be Published
1KIJ	Crystal structure of the 43K ATPase domain of Thermus thermophilus gyrase B in complex with novobiocin 分子名称: DNA GYRASE SUBUNIT B, FORMIC ACID, NOVOBIOCIN 著者 Lamour, V, Hoermann, L, Jeltsch, J.-M, Oudet, P, Moras, D. 登録日 2001-12-03 公開日 2002-06-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 An open conformation of the Thermus thermophilus gyrase B ATP-binding domain. J.Biol.Chem., 277, 2002
3ZHI	N-terminal domain of the CI repressor from bacteriophage TP901-1 分子名称: CI 著者 Frandsen, K.H, Rasmussen, K.K, Poulsen, J.N, Lo Leggio, L. 登録日 2012-12-21 公開日 2013-12-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Binding of the N-Terminal Domain of the Lactococcal Bacteriophage Tp901-1 Ci Repressor to its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. Biochemistry, 52, 2013
6H09	HIV capsid hexamer with IP6 ligand 分子名称: Gag polyprotein, INOSITOL HEXAKISPHOSPHATE 著者 James, L.C. 登録日 2018-07-06 公開日 2018-08-15 最終更新日 2020-10-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis. Elife, 7, 2018
2KFP	Solution NMR structure of PSPTO_3016 from Pseudomonas syringae. Northeast Structural Genomics Consortium target PsR293. 分子名称: PSPTO_3016 protein 著者 Feldmann, E.A, Ramelot, T.A, Zhao, L, Hamilton, K, Ciccosanti, C, Xiao, R, Nair, R, Everett, J.K, Swapna, G, Acton, T.B, Rost, B, Montelione, G.T, Kennedy, M.A, Northeast Structural Genomics Consortium (NESG) 登録日 2009-02-24 公開日 2009-03-24 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Solution NMR and X-ray crystal structures of Pseudomonas syringae Pspto_3016 from protein domain family PF04237 (DUF419) adopt a "double wing" DNA binding motif. J.Struct.Funct.Genom., 13, 2012
427D	5'-D(*CP*GP*CP*(CH2-DM1)GP*CP*G)-3' 分子名称: DAUNOMYCIN, DNA (5'-D(*CP*GP*CP*(G49)P*CP*G)-3') 著者 Schuerman, G, Van Meervelt, L. 登録日 1998-09-21 公開日 2000-01-24 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Conformational Flexibility of the DNA Backbone. J.Am.Chem.Soc., 122, 2000
3H5K	Crystal structure of the ribosome inactivating protein PDL1 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome-inactivating protein PD-L1/PD-L2 著者 Ruggiero, A, Di Maro, A, Severino, V, Chambery, A, Berisio, R. 登録日 2009-04-22 公開日 2009-10-13 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Crystal structure of PD-L1, a ribosome inactivating protein from Phytolacca dioica L. Leaves with the property to induce DNA cleavage Biopolymers, 91, 2009
3KDK	Structure of the C-terminal domain of Bacillus subtilis MutL bound to Zn2+ 分子名称: DNA mismatch repair protein mutL, ZINC ION 著者 Guarne, A, Pillon, M.C. 登録日 2009-10-23 公開日 2010-07-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Structure of the endonuclease domain of MutL: unlicensed to cut. Mol.Cell, 39, 2010
3KDG	C-terminal domain of Bacillus subtilis MutL crystal form II 分子名称: DNA mismatch repair protein mutL 著者 Guarne, A, Pillon, M.C. 登録日 2009-10-22 公開日 2010-07-21 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the endonuclease domain of MutL: unlicensed to cut. Mol.Cell, 39, 2010
2LQ6	Solution structure of BRD1 PHD2 finger 分子名称: Bromodomain-containing protein 1, ZINC ION 著者 Liu, L, Wu, J. 登録日 2012-02-25 公開日 2012-10-24 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of an atypical PHD finger in BRPF2 and its interaction with DNA J.Struct.Biol., 180, 2012
1U6O	Mispairing of a Site-Specific Major Groove (2S,3S)-N6-(2,3,4-Trihydroxybutyl)-2-deoxyadenosyl DNA Adduct of Butadiene Diol Epoxide with Deoxyguanosine: Formation of a dA(anti)dG(anti) Pairing Interaction 分子名称: 5'-D(*CP*GP*GP*AP*CP*(2BU)P*AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*GP*GP*TP*CP*CP*G)-3' 著者 Scholdberg, T.A, Nechev, L.N, Merritt, W.K, Harris, T.M, Harris, C.M, Lloyd, R.S, Stone, M.P. 登録日 2004-07-30 公開日 2004-08-10 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Mispairing of a Site Specific Major Groove (2S,3S)-N6-(2,3,4-Trihydroxybutyl)-2'-deoxyadenosyl DNA Adduct of Butadiene Diol Epoxide with Deoxyguanosine: Formation of a dA(anti)dG(anti) Pairing Interaction. CHEM.RES.TOXICOL., 18, 2005
7YRD	histone methyltransferase 分子名称: DNA (146-MER), Histone H2A.Z, Histone H2B 1.1, ... 著者 Li, H, Wang, W.Y. 登録日 2022-08-09 公開日 2023-08-16 最終更新日 2023-12-13 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural insight into H4K20 methylation on H2A.Z-nucleosome by SUV420H1. Mol.Cell, 83, 2023
3RIQ	Siphovirus 9NA tailspike receptor binding domain 分子名称: GLYCEROL, Tailspike protein 著者 Andres, D, Roske, Y, Doering, C, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2011-04-14 公開日 2012-02-29 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Tail morphology controls DNA release in two Salmonella phages with one lipopolysaccharide receptor recognition system. Mol.Microbiol., 83, 2012
7YRG	histone methyltransferase 分子名称: DNA (146-MER), Histone H2A.Z, Histone H2B 1.1, ... 著者 Li, H, Wang, W.Y. 登録日 2022-08-09 公開日 2023-12-13 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structural insight into H4K20 methylation on H2A.Z-nucleosome by SUV420H1. Mol.Cell, 83, 2023
1NGT	The Role of Minor Groove Functional Groups in DNA Hydration 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(MTR)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Woods, K.K, Lan, T, McLaughlin, L.W, Williams, L.D. 登録日 2002-12-17 公開日 2003-03-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 The Role of Minor Groove Functional Groups in DNA Hydration Nucleic Acids Res., 31, 2003
1PVE	Solution structure of XPC binding domain of hHR23B 分子名称: UV excision repair protein RAD23 homolog B 著者 Kim, B, Ryu, K.-S, Kim, H.J, Choi, B.-S. 登録日 2003-06-27 公開日 2004-08-10 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of the XPC-binding domain of the human DNA repair protein hHR23B. Febs J., 272, 2005
1SSF	Solution structure of the mouse 53BP1 fragment (residues 1463-1617) 分子名称: Transformation related protein 53 binding protein 1 著者 Charier, G, Couprie, J, Alpha-Bazin, B, Meyer, V, Quemeneur, E, Guerois, R, Callebaut, I, Gilquin, B, Zinn-Justin, S. 登録日 2004-03-24 公開日 2004-09-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The Tudor Tandem of 53BP1; A New Structural Motif Involved in DNA and RG-Rich Peptide Binding Structure, 12, 2004
1S14	Crystal structure of Escherichia coli Topoisomerase IV ParE 24kDa subunit 分子名称: NOVOBIOCIN, Topoisomerase IV subunit B 著者 Wei, Y, Gross, C.H. 登録日 2004-01-05 公開日 2004-05-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of Escherichia coli topoisomerase IV ParE subunit (24 and 43 kilodaltons): a single residue dictates differences in novobiocin potency against topoisomerase IV and DNA gyrase. Antimicrob.Agents Chemother., 48, 2004
7YEQ	Structural insight into African Swine Fever Virus CP312R protein reveals it as a single-stranded DNA binding protein 分子名称: CP312R 著者 Chen, L.F, Wu, Y.K. 登録日 2022-07-06 公開日 2023-07-26 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Structural insight into African Swine Fever Virus CP312R protein reveals it as a single-stranded DNA binding protein To Be Published
1ZUJ	The crystal structure of the Lactococcus lactis MG1363 DpsA protein 分子名称: hypothetical protein Llacc01001955 著者 Stillman, T.J, Upadhyay, M, Norte, V.A, Sedelnikova, S.E, Carradus, M, Tzokov, S, Bullough, P.A, Shearman, C.A, Gasson, M.J, Williams, C.H, Artymiuk, P.J, Green, J. 登録日 2005-05-31 公開日 2005-08-30 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The crystal structures of Lactococcus lactis MG1363 Dps proteins reveal the presence of an N-terminal helix that is required for DNA binding. Mol.Microbiol., 57, 2005
1ZS3	The crystal structure of the Lactococcus lactis MG1363 DpsB protein 分子名称: Lactococcus lactis MG1363 DpsA 著者 Stillman, T.J, Upadhyay, M, Norte, V.A, Sedelnikova, S.E, Carradus, M, Tzokov, S, Bullough, P.A, Shearman, C.A, Gasson, M.J, Williams, C.H, Artymiuk, P.J, Green, J. 登録日 2005-05-23 公開日 2005-08-30 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The crystal structures of Lactococcus lactis MG1363 Dps proteins reveal the presence of an N-terminal helix that is required for DNA binding. Mol.Microbiol., 57, 2005
1ZVU	Structure of the full-length E. coli ParC subunit 分子名称: Topoisomerase IV subunit A 著者 Corbett, K.D, Schoeffler, A.J, Thomsen, N.D, Berger, J.M. 登録日 2005-06-02 公開日 2005-07-05 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The Structural Basis for Substrate Specificity in DNA Topoisomerase IV. J.Mol.Biol., 351, 2005
1T6F	Crystal Structure of the Coiled-coil Dimerization Motif of Geminin 分子名称: Geminin 著者 Thepaut, M, Maiorano, D, Guichou, J.-F, Auge, M.-T, Dumas, C, Mechali, M, Padilla, A. 登録日 2004-05-06 公開日 2004-07-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Crystal Structure of the Coiled-coil Dimerization Motif of Geminin: Structural and Functional Insights on DNA Replication Regulation J.Mol.Biol., 342, 2004

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