PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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6GLD	Intercalation of [Ru(TAP)2(11-Br-dppz)]2+ bound to d(TCGGCGCCGA)2 分子名称: BARIUM ION, Ruthenium (bis-(tetraazaphenanthrene)) (11-bromo-dipyridophenazine), d(TCGGCGCCGA)2 著者 McQuaid, K.T, Hall, J.P, Cardin, C.J. 登録日 2018-05-23 公開日 2019-06-19 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.061 Å) 主引用文献 X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes. Chemistry, 24, 2018
6JDE	crystal structure of a DNA repair protein 分子名称: Putative DNA repair helicase RadD, ZINC ION 著者 Yan, X.X, Tang, Q. 登録日 2019-02-01 公開日 2019-06-26 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of a novel ATPase RadD from Escherichia coli. Proteins, 87, 2019
2VL7	Structure of S. tokodaii Xpd4 分子名称: PHOSPHATE ION, XPD 著者 Naismith, J.H, Johnson, K.A, Oke, M, McMahon, S.A, Liu, L, White, M.F, Zawadski, M, Carter, L.G. 登録日 2008-01-08 公開日 2008-05-13 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structure of the DNA Repair Helicase Xpd. Cell(Cambridge,Mass.), 133, 2008
4BE7	MUTANT (K220R) OF THE HSDR SUBUNIT OF THE ECOR124I RESTRICTION ENZYME IN COMPLEX WITH ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... 著者 Csefalvay, E, Lapkouski, M, Guzanova, A, Csefalvay, L, Baikova, T, Shevelev, I, Janscak, P, Smatanova, I.K, Panjikar, S, Carey, J, Weiserova, M, Ettrich, R. 登録日 2013-03-06 公開日 2014-03-26 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.744 Å) 主引用文献 Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme. Plos One, 10, 2015
5CV2	Structural implications of homo-pyrimidine base pairs on the parallel-stranded d(GAY) motif 分子名称: DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*CP*GP*AP*CP*GP*AP*T)-3'), STRONTIUM ION 著者 Tripathi, S, Paukstelis, P. 登録日 2015-07-25 公開日 2015-12-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.693 Å) 主引用文献 Structural Implications of Homopyrimidine Base Pairs in the Parallel-Stranded d(YGA) Motif. Chembiochem, 17, 2016
3I3Q	Crystal Structure of AlkB in complex with Mn(II) and 2-oxoglutarate 分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, MANGANESE (II) ION 著者 Yu, B, Hunt, J.F. 登録日 2009-06-30 公開日 2009-08-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB. Proc.Natl.Acad.Sci.USA, 106, 2009
1ZBB	Structure of the 4_601_167 Tetranucleosome 分子名称: DNA STRAND 1 (ARBITRARY MODEL SEQUENCE), DNA STRAND 2 (ARBITRARY MODEL SEQUENCE), HISTONE H3, ... 著者 Schalch, T, Duda, S, Sargent, D.F, Richmond, T.J. 登録日 2005-04-08 公開日 2005-07-12 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (9 Å) 主引用文献 X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature, 436, 2005
4RGH	Human DNA Damage-Inducible Protein: From Protein Chemistry and 3D Structure to Deciphering its Cellular Role 分子名称: CHLORIDE ION, Protein DDI1 homolog 2 著者 Brynda, J, Grantz Saskova, K. 登録日 2014-09-30 公開日 2016-02-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Human DNA Damage-Inducible Protein: From Protein Chemistry and 3D Structure to Deciphering its Cellular Role To be Published
1D4B	CIDE-N DOMAIN OF HUMAN CIDE-B 分子名称: HUMAN CELL DEATH-INDUCING EFFECTOR B 著者 Lugovskoy, A, Zhou, P, Chou, J, McCarty, J, Li, P, Wagner, G. 登録日 1999-10-02 公開日 1999-12-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the CIDE-N domain of CIDE-B and a model for CIDE-N/CIDE-N interactions in the DNA fragmentation pathway of apoptosis. Cell(Cambridge,Mass.), 99, 1999
2Y3M	Structure of the extra-membranous domain of the secretin HofQ from Actinobacillus actinomycetemcomitans 分子名称: FORMIC ACID, GLYCEROL, PROTEIN TRANSPORT PROTEIN HOFQ 著者 Tarry, M, Jaaskelainen, M, Tuominen, H, Ihalin, R, Hogbom, M. 登録日 2010-12-21 公開日 2011-04-27 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The Extra-Membranous Domains of the Competence Protein Hofq Show DNA Binding, Flexibility and a Shared Fold with Type I Kh Domains. J.Mol.Biol., 409, 2011
5BOC	Crystal structure of topoisomerase ParE inhibitor 分子名称: 3-methyl-4-({3-[3-methyl-5-(trifluoromethyl)phenyl]-1H-pyrazol-5-yl}carbamoyl)benzoic acid, DNA topoisomerase 4 subunit B 著者 Tan, Y.W, Chen, G.Y, Hung, A.W, Hill, J. 登録日 2015-05-27 公開日 2015-06-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Application of Fragment-based Drug Discovery against DNA GyraseB To be published
5BOD	Crystal structure of Streptococcus pneumonia ParE inhibitor 分子名称: (2R)-N-[3-(3,5-dimethylphenyl)-1H-pyrazol-5-yl]-1,4-dioxane-2-carboxamide, DNA topoisomerase 4 subunit B 著者 Tan, Y.W, Chen, G, Hung, A.W, Hill, J. 登録日 2015-05-27 公開日 2015-06-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Application of Fragment-based Drug Discovery against DNA GyraseB to be published
1XCI	Mispair Aligned N3T-Butyl-N3T Interstrand Crosslink 分子名称: 5'-D(*CP*GP*AP*AP*AP*(TTM)P*TP*TP*TP*CP*G)-3' 著者 da Silva, M.W, Bierbryer, R.G, Wilds, C.J, Noronha, A.M, Colvin, O.M, Miller, P.S, Gamcsik, M.P. 登録日 2004-09-02 公開日 2005-08-16 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Intrastrand base-stacking buttresses widening of major groove in interstrand cross-linked B-DNA. Bioorg.Med.Chem., 13, 2005
1JUA	Solution Structure of the Deoxyribose HIV-1Lai Initiation Sequence Stable Dimer 分子名称: 5'-D(*CP*TP*TP*GP*CP*TP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3' 著者 Barbault, F, Huynh-Dinh, T, Paoletti, J, Lancelot, G. 登録日 2001-08-24 公開日 2004-01-20 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 A new peculiar DNA structure: NMR solution structure of a DNA kissing complex. J.Biomol.Struct.Dyn., 19, 2002
4BEC	MUTANT (K220A) OF THE HSDR SUBUNIT OF THE ECOR124I RESTRICTION ENZYME IN COMPLEX WITH ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, TYPE I RESTRICTION ENZYME HSDR 著者 Csefalvay, E, Lapkouski, M, Guzanova, A, Csefalvay, L, Baikova, T, Shevelev, I, Janscak, P, Smatanova, I.K, Panjikar, S, Carey, J, Weiserova, M, Ettrich, R. 登録日 2013-03-07 公開日 2014-03-26 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.84 Å) 主引用文献 Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme. Plos One, 10, 2015
4BEB	MUTANT (K220E) OF THE HSDR SUBUNIT OF THE ECOR124I RESTRICTION ENZYME IN COMPLEX WITH ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, TYPE I RESTRICTION ENZYME HSDR 著者 Csefalvay, E, Lapkouski, M, Guzanova, A, Csefalvay, L, Baikova, T, Shevelev, I, Janscak, P, Smatanova, I.K, Panjikar, S, Carey, J, Weiserova, M, Ettrich, R. 登録日 2013-03-07 公開日 2014-03-26 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.989 Å) 主引用文献 Functional Coupling of Duplex Translocation to DNA Cleavage in a Type I Restriction Enzyme. Plos One, 10, 2015
1MUY	CATALYTIC DOMAIN OF MUTY FROM ESCHERICHIA COLI 分子名称: ADENINE GLYCOSYLASE, GLYCEROL, IMIDAZOLE, ... 著者 Guan, Y, Tainer, J.A. 登録日 1998-08-20 公開日 1999-08-20 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily. Nat.Struct.Biol., 5, 1998
1FUF	CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE 分子名称: (5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3'), MAGNESIUM ION, SPERMINE 著者 Deng, J, Xiong, Y, Sudarsanakumar, C, Shi, K, Sundaralingam, M. 登録日 2000-09-15 公開日 2001-11-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple. RNA, 7, 2001
2KJN	pH dependent structures of LAH4 in micellar environmnet:mode of acting 分子名称: lah4 著者 Georgescu, J, Bechinger, B. 登録日 2009-06-04 公開日 2010-06-23 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR structures of the histidine-rich peptide LAH4 in micellar environments: membrane insertion, pH-dependent mode of antimicrobial action, and DNA transfection. Biophys.J., 99, 2010
1Z5Z	Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain 分子名称: Helicase of the snf2/rad54 family 著者 Duerr, H, Koerner, C, Mueller, M, Hickmann, V, Hopfner, K.P. 登録日 2005-03-21 公開日 2005-05-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA Cell(Cambridge,Mass.), 121, 2005
2KJO	pH dependent structures of LAH4 in micellar environment: mode of acting 分子名称: lah4 著者 Georgescu, J, Bechinger, B. 登録日 2009-06-04 公開日 2010-06-23 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 NMR structures of the histidine-rich peptide LAH4 in micellar environments: membrane insertion, pH-dependent mode of antimicrobial action, and DNA transfection. Biophys.J., 99, 2010
4E8U	Crystal structure of Arabidopsis IDN2 XS domain along with a small segment of adjacent coiled-coil region 分子名称: Putative uncharacterized protein T8P19.180, SULFATE ION 著者 Simanshu, D.K, Patel, D.J. 登録日 2012-03-20 公開日 2012-06-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.701 Å) 主引用文献 INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc.Natl.Acad.Sci.USA, 109, 2012
2WKD	Crystal structure of a double Ile-to-Met mutant of protein ORF34 from lactococcus phage p2 分子名称: ORF34P2 著者 Scaltriti, E, Cambillau, C, Ortiz-Lombardia, M. 登録日 2009-06-09 公開日 2009-09-15 最終更新日 2019-05-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure and Function of Phage P2 Orf34(P2), a New Type of Single-Stranded DNA Binding Protein. Mol.Microbiol., 73, 2009
1MUN	CATALYTIC DOMAIN OF MUTY FROM ESCHERICHIA COLI D138N MUTANT 分子名称: ADENINE GLYCOSYLASE, GLYCEROL, IMIDAZOLE, ... 著者 Guan, Y, Tainer, J.A. 登録日 1998-08-26 公開日 1999-08-26 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily. Nat.Struct.Biol., 5, 1998
2JUH	Solution structure of DNA binding domain of ngTRF1 分子名称: Telomere binding protein TBP1 著者 Lee, N, Ko, S. 登録日 2007-08-27 公開日 2008-09-16 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Solution structure of DNA binding domain of ngTRF1 To be Published

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