7UID
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![BU of 7uid by Molmil](/molmil-images/mine/7uid) | Thyclotides peptide nucleic acid in complex with DNA | 分子名称: | CHLORIDE ION, DNA (5'-D(*GP*AP*TP*GP*TP*GP*AP*TP*A)-3'), Thyclotide, ... | 著者 | Botos, I, Appella, D.H. | 登録日 | 2022-03-29 | 公開日 | 2023-04-05 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Variation of Tetrahydrofurans in Thyclotides Enhances Oligonucleotide Binding and Cellular Uptake of Peptide Nucleic Acids. Jacs Au, 3, 2023
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6JYK
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2KCA
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![BU of 2kca by Molmil](/molmil-images/mine/2kca) | GP16 | 分子名称: | Bacteriophage SPP1 complete nucleotide sequence | 著者 | Gallopin, M, Gilquin, B, Zinn-Justin, S. | 登録日 | 2008-12-18 | 公開日 | 2009-06-02 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating. Proc.Natl.Acad.Sci.USA, 106, 2009
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7QD5
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![BU of 7qd5 by Molmil](/molmil-images/mine/7qd5) | Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 48 bp long transposon end DNA | 分子名称: | IR48 DNA substrate, non transferred strand, IR48 transferred strand, ... | 著者 | Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G. | 登録日 | 2021-11-26 | 公開日 | 2022-10-26 | 最終更新日 | 2024-07-17 | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | 主引用文献 | Structural insight into Tn3 family transposition mechanism. Nat Commun, 13, 2022
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2KBZ
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1RRR
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![BU of 1rrr by Molmil](/molmil-images/mine/1rrr) | RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES | 分子名称: | RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3') | 著者 | Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T. | 登録日 | 1997-10-21 | 公開日 | 1998-04-22 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. Biochemistry, 37, 1998
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1RZ9
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![BU of 1rz9 by Molmil](/molmil-images/mine/1rz9) | Crystal Structure of AAV Rep complexed with the Rep-binding sequence | 分子名称: | 26-MER, Rep protein | 著者 | Hickman, A.B, Ronning, D.R, Perez, Z.N, Kotin, R.M, Dyda, F. | 登録日 | 2003-12-24 | 公開日 | 2004-02-17 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces. Mol.Cell, 13, 2004
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454D
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![BU of 454d by Molmil](/molmil-images/mine/454d) | INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' | 分子名称: | 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3', DELTA-ALPHA-RH[2R,9R-DIAMINO-4,7-DIAZADECANE]9,10-PHENANTHRENEQUINONE DIIMINE | 著者 | Kielkopf, C.L, Erkkila, K.E, Hudson, B.P, Barton, J.K, Rees, D.C. | 登録日 | 1999-03-03 | 公開日 | 2000-02-21 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Structure of a photoactive rhodium complex intercalated into DNA. Nat.Struct.Biol., 7, 2000
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2P6U
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8BT1
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![BU of 8bt1 by Molmil](/molmil-images/mine/8bt1) | YdaT transcription regulator (CII functional analog) | 分子名称: | CHLORIDE ION, GLYCEROL, SULFATE ION, ... | 著者 | Prolic-Kalinsek, M, Loris, R. | 登録日 | 2022-11-27 | 公開日 | 2023-02-22 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.39788437 Å) | 主引用文献 | Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7. Acta Crystallogr D Struct Biol, 79, 2023
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1GXC
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![BU of 1gxc by Molmil](/molmil-images/mine/1gxc) | FHA domain from human Chk2 kinase in complex with a synthetic phosphopeptide | 分子名称: | SERINE/THREONINE-PROTEIN KINASE CHK2, SYNTHETIC PHOSPHOPEPTIDE | 著者 | Li, J, Williams, B.L, Haire, L.F, Goldberg, M, Wilker, E, Durocher, D, Yaffe, M.B, Jackson, S.P, Smerdon, S.J. | 登録日 | 2002-04-02 | 公開日 | 2002-06-13 | 最終更新日 | 2016-12-21 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Structural and Functional Versatility of the Fha Domain in DNA-Damage Signaling by the Tumor Suppressor Kinase Chk2 Mol.Cell, 9, 2002
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3HKM
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![BU of 3hkm by Molmil](/molmil-images/mine/3hkm) | Crystal Structure of rice(Oryza sativa) Rrp46 | 分子名称: | Os03g0854200 protein | 著者 | Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Yuan, H.S. | 登録日 | 2009-05-25 | 公開日 | 2010-01-26 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.9845 Å) | 主引用文献 | Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation Rna, 16, 2010
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5DAZ
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2GYX
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![BU of 2gyx by Molmil](/molmil-images/mine/2gyx) | Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution. | 分子名称: | 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, N,N'-(1H-PYRROLE-2,5-DIYLDI-4,1-PHENYLENE)DIBENZENECARBOXIMIDAMIDE | 著者 | Lee, M.P.H, Neidle, S. | 登録日 | 2006-05-10 | 公開日 | 2007-05-22 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (1.86 Å) | 主引用文献 | Induced fit conformational changes of a "reversed amidine" heterocycle: optimized interactions in a DNA minor groove complex. J.Am.Chem.Soc., 129, 2007
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1T05
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![BU of 1t05 by Molmil](/molmil-images/mine/1t05) | HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate | 分子名称: | GLYCEROL, MAGNESIUM ION, POL polyprotein, ... | 著者 | Tuske, S, Sarafianos, S.G, Ding, J, Arnold, E. | 登録日 | 2004-04-07 | 公開日 | 2004-05-11 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structures of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir Nat.Struct.Mol.Biol., 11, 2004
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3KTZ
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![BU of 3ktz by Molmil](/molmil-images/mine/3ktz) | Structure of GAP31 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome-inactivating protein gelonin | 著者 | Kong, X.-P. | 登録日 | 2009-11-26 | 公開日 | 2010-01-26 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions. Biochem.Biophys.Res.Commun., 391, 2010
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2K97
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![BU of 2k97 by Molmil](/molmil-images/mine/2k97) | Dimeric solution structure of the cyclic octamer d(pCGCTCCGT) | 分子名称: | 5'-D(P*CP*GP*CP*TP*CP*CP*GP*T)-3' | 著者 | Viladoms, J, Escaja, N, Frieden, M, Gomez-Pinto, I, Pedroso, E, Gonzalez, C. | 登録日 | 2008-09-30 | 公開日 | 2009-04-28 | 最終更新日 | 2024-05-08 | 実験手法 | SOLUTION NMR | 主引用文献 | Self-association of short DNA loops through minor groove C:G:G:C tetrads. Nucleic Acids Res., 37, 2009
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2ET0
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![BU of 2et0 by Molmil](/molmil-images/mine/2et0) | The structure of a three-way DNA junction in complex with a metallo-supramolecular helicate reveals a new target for drugs | 分子名称: | 5'-D(*CP*GP*TP*AP*CP*G)-3', FE (II) ION, N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE | 著者 | Oleksi, A, Blanco, A.G, Boer, R, Uson, I, Aymami, J, Coll, M. | 登録日 | 2005-10-27 | 公開日 | 2006-03-14 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Molecular Recognition of a Three-Way DNA Junction by a Metallosupramolecular Helicate ANGEW.CHEM.INT.ED.ENGL., 45, 2006
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1R05
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![BU of 1r05 by Molmil](/molmil-images/mine/1r05) | Solution Structure of Max B-HLH-LZ | 分子名称: | Max protein | 著者 | Sauv, S, Tremblay, L, Lavigne, P. | 登録日 | 2003-09-19 | 公開日 | 2003-10-21 | 最終更新日 | 2021-10-27 | 実験手法 | SOLUTION NMR | 主引用文献 | The NMR solution structure of a mutant of the Max b/HLH/LZ free of DNA: insights into the specific and reversible DNA binding mechanism of dimeric transcription factors J.Mol.Biol., 342, 2004
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3GOM
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1SP2
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1SP1
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3GPL
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![BU of 3gpl by Molmil](/molmil-images/mine/3gpl) | Crystal structure of the ternary complex of RecD2 with DNA and ADPNP | 分子名称: | 5'-D(*T*TP*TP*TP*TP*TP*TP*T)-3', Exodeoxyribonuclease V, subunit RecD, ... | 著者 | Saikrishnan, K, Cook, N, Wigley, D.B. | 登録日 | 2009-03-23 | 公開日 | 2009-06-16 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Mechanistic basis of 5'-3' translocation in SF1B helicases. Cell(Cambridge,Mass.), 137, 2009
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1SXQ
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3V9W
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![BU of 3v9w by Molmil](/molmil-images/mine/3v9w) | |