PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7UID	Thyclotides peptide nucleic acid in complex with DNA 分子名称: CHLORIDE ION, DNA (5'-D(*GP*AP*TP*GP*TP*GP*AP*TP*A)-3'), Thyclotide, ... 著者 Botos, I, Appella, D.H. 登録日 2022-03-29 公開日 2023-04-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Variation of Tetrahydrofurans in Thyclotides Enhances Oligonucleotide Binding and Cellular Uptake of Peptide Nucleic Acids. Jacs Au, 3, 2023
6JYK	Crystal Structure of C. crescentus free GapR 分子名称: UPF0335 protein CCNA_03428 著者 Xia, B, Huang, Q. 登録日 2019-04-26 公開日 2020-08-05 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 GapR binds DNA through dynamic opening of its tetrameric interface. Nucleic Acids Res., 48, 2020
2KCA	GP16 分子名称: Bacteriophage SPP1 complete nucleotide sequence 著者 Gallopin, M, Gilquin, B, Zinn-Justin, S. 登録日 2008-12-18 公開日 2009-06-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating. Proc.Natl.Acad.Sci.USA, 106, 2009
7QD5	Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 48 bp long transposon end DNA 分子名称: IR48 DNA substrate, non transferred strand, IR48 transferred strand, ... 著者 Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G. 登録日 2021-11-26 公開日 2022-10-26 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural insight into Tn3 family transposition mechanism. Nat Commun, 13, 2022
2KBZ	NMR structure of protein gp15 of bacteriophage SPP1 分子名称: 15 protein (Bacteriophage SPP1 complete nucleotide sequence) 著者 Gallopin, M, Gilquin, B, Zinn-Justin, S. 登録日 2008-12-12 公開日 2009-06-09 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating Proc.Natl.Acad.Sci.USA, 106, 2009
1RRR	RNA DUPLEX CONTAINING A PURINE-RICH STRAND, NMR, 10 STRUCTURES 分子名称: RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*AP*GP*C)-3'), RNA (5'-R(*GP*CP*UP*UP*CP*UP*CP*UP*UP*C)-3') 著者 Gyi, J.I, Lane, A.N, Conn, G.L, Brown, T. 登録日 1997-10-21 公開日 1998-04-22 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. Biochemistry, 37, 1998
1RZ9	Crystal Structure of AAV Rep complexed with the Rep-binding sequence 分子名称: 26-MER, Rep protein 著者 Hickman, A.B, Ronning, D.R, Perez, Z.N, Kotin, R.M, Dyda, F. 登録日 2003-12-24 公開日 2004-02-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces. Mol.Cell, 13, 2004
454D	INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3' 分子名称: 5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3', DELTA-ALPHA-RH[2R,9R-DIAMINO-4,7-DIAZADECANE]9,10-PHENANTHRENEQUINONE DIIMINE 著者 Kielkopf, C.L, Erkkila, K.E, Hudson, B.P, Barton, J.K, Rees, D.C. 登録日 1999-03-03 公開日 2000-02-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Structure of a photoactive rhodium complex intercalated into DNA. Nat.Struct.Biol., 7, 2000
2P6U	Apo structure of the Hel308 superfamily 2 helicase 分子名称: PHOSPHATE ION, afuHEL308 HELICASE 著者 Buettner, K, Nehring, S, Hopfner, K.P. 登録日 2007-03-19 公開日 2007-06-12 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 Structural basis for DNA duplex separation by a superfamily-2 helicase. Nat.Struct.Mol.Biol., 14, 2007
8BT1	YdaT transcription regulator (CII functional analog) 分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ... 著者 Prolic-Kalinsek, M, Loris, R. 登録日 2022-11-27 公開日 2023-02-22 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.39788437 Å) 主引用文献 Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7. Acta Crystallogr D Struct Biol, 79, 2023
1GXC	FHA domain from human Chk2 kinase in complex with a synthetic phosphopeptide 分子名称: SERINE/THREONINE-PROTEIN KINASE CHK2, SYNTHETIC PHOSPHOPEPTIDE 著者 Li, J, Williams, B.L, Haire, L.F, Goldberg, M, Wilker, E, Durocher, D, Yaffe, M.B, Jackson, S.P, Smerdon, S.J. 登録日 2002-04-02 公開日 2002-06-13 最終更新日 2016-12-21 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural and Functional Versatility of the Fha Domain in DNA-Damage Signaling by the Tumor Suppressor Kinase Chk2 Mol.Cell, 9, 2002
3HKM	Crystal Structure of rice(Oryza sativa) Rrp46 分子名称: Os03g0854200 protein 著者 Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Yuan, H.S. 登録日 2009-05-25 公開日 2010-01-26 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.9845 Å) 主引用文献 Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation Rna, 16, 2010
5DAZ	Crystal structure of Scabin, a mono-ADP-ribosyltransferase from Streptomyces scabies 分子名称: Scabin 著者 Dutta, D, Lanoue, J, Merrill, A.R. 登録日 2015-08-20 公開日 2016-03-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Scabin, a Novel DNA-acting ADP-ribosyltransferase from Streptomyces scabies. J.Biol.Chem., 291, 2016
2GYX	Crystal structure of DB884- D(CGCGAATTCGCG)2 complex at 1.86 A resolution. 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, N,N'-(1H-PYRROLE-2,5-DIYLDI-4,1-PHENYLENE)DIBENZENECARBOXIMIDAMIDE 著者 Lee, M.P.H, Neidle, S. 登録日 2006-05-10 公開日 2007-05-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Induced fit conformational changes of a "reversed amidine" heterocycle: optimized interactions in a DNA minor groove complex. J.Am.Chem.Soc., 129, 2007
1T05	HIV-1 reverse transcriptase crosslinked to template-primer with tenofovir-diphosphate bound as the incoming nucleotide substrate 分子名称: GLYCEROL, MAGNESIUM ION, POL polyprotein, ... 著者 Tuske, S, Sarafianos, S.G, Ding, J, Arnold, E. 登録日 2004-04-07 公開日 2004-05-11 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structures of HIV-1 RT-DNA complexes before and after incorporation of the anti-AIDS drug tenofovir Nat.Struct.Mol.Biol., 11, 2004
3KTZ	Structure of GAP31 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome-inactivating protein gelonin 著者 Kong, X.-P. 登録日 2009-11-26 公開日 2010-01-26 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions. Biochem.Biophys.Res.Commun., 391, 2010
2K97	Dimeric solution structure of the cyclic octamer d(pCGCTCCGT) 分子名称: 5'-D(P*CP*GP*CP*TP*CP*CP*GP*T)-3' 著者 Viladoms, J, Escaja, N, Frieden, M, Gomez-Pinto, I, Pedroso, E, Gonzalez, C. 登録日 2008-09-30 公開日 2009-04-28 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 Self-association of short DNA loops through minor groove C:G:G:C tetrads. Nucleic Acids Res., 37, 2009
2ET0	The structure of a three-way DNA junction in complex with a metallo-supramolecular helicate reveals a new target for drugs 分子名称: 5'-D(*CP*GP*TP*AP*CP*G)-3', FE (II) ION, N-[(1E)-PYRIDIN-2-YLMETHYLENE]-N-[4-(4-{[(1E)-PYRIDIN-2-YLMETHYLENE]AMINO}BENZYL)PHENYL]AMINE 著者 Oleksi, A, Blanco, A.G, Boer, R, Uson, I, Aymami, J, Coll, M. 登録日 2005-10-27 公開日 2006-03-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Molecular Recognition of a Three-Way DNA Junction by a Metallosupramolecular Helicate ANGEW.CHEM.INT.ED.ENGL., 45, 2006
1R05	Solution Structure of Max B-HLH-LZ 分子名称: Max protein 著者 Sauv, S, Tremblay, L, Lavigne, P. 登録日 2003-09-19 公開日 2003-10-21 最終更新日 2021-10-27 実験手法 SOLUTION NMR 主引用文献 The NMR solution structure of a mutant of the Max b/HLH/LZ free of DNA: insights into the specific and reversible DNA binding mechanism of dimeric transcription factors J.Mol.Biol., 342, 2004
3GOM	Barium bound to the Holliday junction sequence d(TCGGCGCCGA)4 分子名称: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3', BARIUM ION 著者 Naseer, A, Cardin, C.J. 登録日 2009-03-19 公開日 2009-04-07 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligand. Proc.Natl.Acad.Sci.USA, 108, 2011
1SP2	NMR STRUCTURE OF A ZINC FINGER DOMAIN FROM TRANSCRIPTION FACTOR SP1F2, MINIMIZED AVERAGE STRUCTURE 分子名称: SP1F2, ZINC ION 著者 Narayan, V.A, Kriwacki, R.W, Caradonna, J.P. 登録日 1996-11-21 公開日 1997-04-21 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition. J.Biol.Chem., 272, 1997
1SP1	NMR STRUCTURE OF A ZINC FINGER DOMAIN FROM TRANSCRIPTION FACTOR SP1F3, MINIMIZED AVERAGE STRUCTURE 分子名称: SP1F3, ZINC ION 著者 Narayan, V.A, Kriwacki, R.W, Caradonna, J.P. 登録日 1996-11-21 公開日 1997-04-21 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition. J.Biol.Chem., 272, 1997
3GPL	Crystal structure of the ternary complex of RecD2 with DNA and ADPNP 分子名称: 5'-D(*T*TP*TP*TP*TP*TP*TP*T)-3', Exodeoxyribonuclease V, subunit RecD, ... 著者 Saikrishnan, K, Cook, N, Wigley, D.B. 登録日 2009-03-23 公開日 2009-06-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mechanistic basis of 5'-3' translocation in SF1B helicases. Cell(Cambridge,Mass.), 137, 2009
1SXQ	BGT in complex with a 13mer DNA containing a central C:G base pair and UDP 分子名称: 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', DNA beta-glucosyltransferase, ... 著者 Lariviere, L, Morera, S. 登録日 2004-03-31 公開日 2004-06-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase J.Biol.Chem., 279, 2004
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site 分子名称: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2011-12-28 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.702 Å) 主引用文献 How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012

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