PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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3GGI	Locating monovalent cations in one turn of G/C rich B-DNA 分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, THALLIUM (I) ION 著者 Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D. 登録日 2009-02-28 公開日 2010-03-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (0.98 Å) 主引用文献 Locating monovalent cations in one turn of G/C rich B-DNA To be Published
3BD3	Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, catalytic antibody 著者 Park, S.K, Kim, J.S. 登録日 2007-11-14 公開日 2008-04-01 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals Proteins, 71, 2008
2H8E	Structure RusA D70N 分子名称: Crossover junction endodeoxyribonuclease rusA 著者 Macmaster, R.A. 登録日 2006-06-07 公開日 2007-04-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity. Nucleic Acids Res., 34, 2006
3GGK	Locating monovalent cations in one turn of G/C rich B-DNA 分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION, RUBIDIUM ION 著者 Maehigashi, T, Moulaei, T, Watkins, D, Komeda, S, Williams, L.D. 登録日 2009-02-28 公開日 2010-03-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (0.87 Å) 主引用文献 Locating monovalent cations in one turn of G/C rich B-DNA To be Published
6PIG	V. cholerae TniQ-Cascade complex, closed conformation 分子名称: RNA (60-MER), TniQ monomer 1, TniQ monomer 2, ... 著者 Halpin-Healy, T, Klompe, S, Sternberg, S.H. 登録日 2019-06-26 公開日 2019-10-02 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system. Nature, 577, 2020
1STZ	Crystal structure of a hypothetical protein at 2.2 A resolution 分子名称: Heat-inducible transcription repressor hrcA homolog 著者 Liu, J, Adams, P.D, Shin, D.-H, Huang, C, Yokota, H, Jancarik, J, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC) 登録日 2004-03-25 公開日 2004-08-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization. J.Mol.Biol., 350, 2005
2GAJ	Structure of Full Length Topoisomerase I from Thermotoga maritima in monoclinic crystal form 分子名称: DNA topoisomerase I 著者 Hansen, G. 登録日 2006-03-09 公開日 2006-04-25 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal Structure of Full Length Topoisomerase I from Thermotoga maritima J.Mol.Biol., 358, 2006
3EH8	Crystal structure of Y2 I-AniI variant (F13Y/S111Y)/DNA complex with calcium 分子名称: 31-MER, CALCIUM ION, Intron-encoded DNA endonuclease I-AniI 著者 Takeuchi, R, Stoddard, B.L. 登録日 2008-09-11 公開日 2009-01-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Optimization of in vivo activity of a bifunctional homing endonuclease and maturase reverses evolutionary degradation. Nucleic Acids Res., 37, 2009
3P87	Structure of human PCNA bound to RNASEH2B PIP box peptide 分子名称: Proliferating cell nuclear antigen, Ribonuclease H2 subunit B 著者 Bubeck, D, Reijns, M.A, Graham, S.C, Astell, K.R, Jones, E.Y, Jackson, A.P. 登録日 2010-10-13 公開日 2011-02-02 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 PCNA directs type 2 RNase H activity on DNA replication and repair substrates. Nucleic Acids Res., 39, 2011
6IMC	Crystal Structure of ALKBH1 in complex with Mn(II) and N-Oxalylglycine 分子名称: MANGANESE (II) ION, N-OXALYLGLYCINE, Nucleic acid dioxygenase ALKBH1 著者 Zhang, M, Yang, S, Zhao, W, Li, H. 登録日 2018-10-22 公開日 2020-01-22 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA. Cell Res., 30, 2020
2IVN	Structure of UP1 protein 分子名称: GLYCEROL, MAGNESIUM ION, O-SIALOGLYCOPROTEIN ENDOPEPTIDASE, ... 著者 Hecker, A, Leulliot, N, Graille, M, Dorlet, P, Quevillon-Cheruel, S, Ulryck, N, Van Tilbeurgh, H, Forterre, P. 登録日 2006-06-14 公開日 2007-07-31 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 An Archaeal Orthologue of the Universal Protein Kae1 is an Iron Metalloprotein which Exhibits Atypical DNA-Binding Properties and Apurinic-Endonuclease Activity in Vitro. Nucleic Acids Res., 35, 2007
6PIF	V. cholerae TniQ-Cascade complex, open conformation 分子名称: Cas7, type I-F CRISPR-associated protein, TniQ monomer 1, ... 著者 Halpin-Healy, T, Klompe, S, Sternberg, S.H. 登録日 2019-06-26 公開日 2019-10-02 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system. Nature, 577, 2020
5FPO	Structure of Bacterial DNA Ligase with small-molecule ligand 1H- indazol-7-amine (AT4213) in an alternate binding site. 分子名称: 1H-indazol-7-amine, DNA LIGASE 著者 Jhoti, H, Ludlow, R.F, Pathuri, P, Saini, H.K, Tickle, I.J, Tisi, D, Verdonk, M, Williams, P.A. 登録日 2015-12-02 公開日 2015-12-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA, 112, 2015
6RJA	Cryo-EM structure of St1Cas9-sgRNA-tDNA20-AcrIIA6 dimeric assembly. 分子名称: AcrIIA6, CRISPR-associated endonuclease Cas9 1, RNA (78-MER), ... 著者 Goulet, A, Cambillau, C, Chaves-Sanjuan, A. 登録日 2019-04-26 公開日 2019-10-02 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Cas9 Allosteric Inhibition by the Anti-CRISPR Protein AcrIIA6. Mol.Cell, 76, 2019
8V9N	Human PU.1 ETS-Domain (165-270) Bound to d(AATAGAAGGAAGTGGG) 分子名称: DNA (5'-D(*AP*AP*TP*AP*GP*AP*AP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*TP*TP*CP*TP*AP*T)-3'), Transcription factor PU.1 著者 Terrell, J.R, Ogbonna, E.N, Poon, G.M.K, Wilson, W.D. 登録日 2023-12-08 公開日 2024-10-02 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Structural Characterization of GC Base Pair Recognition by a Diamidine Small Molecule To Be Published
6S03	Carbonic Anhydrase CAIX mimic in complex with inhibitor I39LT379 分子名称: 4-[[4-[5,5-dimethyl-2-(6-methylpyridin-2-yl)-4,6-dihydropyrrolo[1,2-b]pyrazol-3-yl]pyridin-2-yl]amino]benzenesulfonamide, Carbonic anhydrase 2, ZINC ION 著者 Kugler, M, Brynda, J, Rezacova, P. 登録日 2019-06-13 公開日 2020-06-03 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Identification of Novel Carbonic Anhydrase IX Inhibitors Using High-Throughput Screening of Pooled Compound Libraries by DNA-Linked Inhibitor Antibody Assay (DIANA). SLAS Discov, 25, 2020
2IVO	Structure of UP1 protein 分子名称: TUNGSTATE(VI)ION, UP1 著者 Hecker, A, Leulliot, N, Graille, M, Dorlet, P, Quevillon-Cheruel, S, Ulryck, N, Van Tilbeurgh, H, Forterre, P. 登録日 2006-06-14 公開日 2007-07-31 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 An Archaeal Orthologue of the Universal Protein Kae1 is an Iron Metalloprotein which Exhibits Atypical DNA-Binding Properties and Apurinic-Endonuclease Activity in Vitro. Nucleic Acids Res., 35, 2007
1B63	MUTL COMPLEXED WITH ADPNP 分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, MUTL, ... 著者 Yang, W. 登録日 1999-01-20 公開日 1999-06-08 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Transformation of MutL by ATP binding and hydrolysis: a switch in DNA mismatch repair. Cell(Cambridge,Mass.), 97, 1999
366D	1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX 分子名称: 6-BROMO-9-AMINO-N-ETHYL(DIAMINOMETHYL)ACRIDINE-4-CARBOXAMIDE, DNA (5'-D(*CP*GP*(BRU)P*AP*CP*G)-3') 著者 Todd, A.K, Adams, A, Thorpe, J.H, Denny, W.A, Cardin, C.J. 登録日 1997-12-19 公開日 1999-04-06 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethylamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5-BrU)ACG)2 at 1.3-A resolution. J.Med.Chem., 42, 1999
2IVP	Structure of UP1 protein 分子名称: ADENOSINE-5'-TRIPHOSPHATE, FE (II) ION, O-SIALOGLYCOPROTEIN ENDOPEPTIDASE 著者 Hecker, A, Leulliot, N, Graille, M, Dorlet, P, Quevillon-Cheruel, S, Ulryck, N, Van Tilbeurgh, H, Forterre, P. 登録日 2006-06-14 公開日 2007-07-31 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 An Archaeal Orthologue of the Universal Protein Kae1 is an Iron Metalloprotein which Exhibits Atypical DNA-Binding Properties and Apurinic-Endonuclease Activity in Vitro. Nucleic Acids Res., 35, 2007
6H2J	Crystal structure of the HsdR subunit of the EcoR124I restriction enzyme with the C-terminal domain 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Type I restriction enzyme R Protein 著者 Grinkevich, P, Mesters, J.R, Ettrich, R.H. 登録日 2018-07-13 公開日 2018-08-08 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding. J. Biol. Chem., 293, 2018
7B5W	RCK_C domain of S.agalactiae BusR in ligand-free state 分子名称: GntR family transcriptional regulator 著者 Bandera, A.M, Witte, G. 登録日 2020-12-07 公開日 2021-08-11 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 BusR senses bipartite DNA binding motifs by a unique molecular ruler architecture. Nucleic Acids Res., 49, 2021
7B5U	RCK_C domain dimer of S.agalactiae BusR in complex with c-di-AMP 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, GntR family transcriptional regulator 著者 Bandera, A.M, Witte, G. 登録日 2020-12-07 公開日 2021-08-11 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 BusR senses bipartite DNA binding motifs by a unique molecular ruler architecture. Nucleic Acids Res., 49, 2021
4KFR	Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with sulfate 分子名称: Genome packaging NTPase B204, MAGNESIUM ION, SULFATE ION 著者 Happonen, L.J, Oksanen, E, Goldman, A, Kajander, T, Butcher, S. 登録日 2013-04-27 公開日 2013-05-22 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.956 Å) 主引用文献 The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2. J.Virol., 87, 2013
2VKG	COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS 分子名称: CHLORIDE ION, DODECIN, MAGNESIUM ION, ... 著者 Grininger, M, Noell, G, Trawoeger, S, Sinner, E, Oesterhelt, D. 登録日 2007-12-19 公開日 2008-09-30 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Electrochemical Switching of the Flavoprotein Dodecin at Gold Surfaces Modified by Flavin-DNA Hybrid Linkers Biointerphases, 3, 2008

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