PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4JLZ	Structure of porcine cGAS in complex with bound UTP 分子名称: MAGNESIUM ION, URIDINE 5'-TRIPHOSPHATE, Uncharacterized protein, ... 著者 Civril, F, Hopfner, K.P. 登録日 2013-03-13 公開日 2013-06-12 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Structural mechanism of cytosolic DNA sensing by cGAS Nature, 498, 2013
7V5Y	Crystal structure of hexameric complex of Sa2YoeB-Sa2YefM toxin-antitoxin from Staphylococcus aureus 分子名称: Antitoxin, Putative mRNA interferase YoeB 著者 Xue, L, Khan, M.H, Yue, J. 登録日 2021-08-18 公開日 2021-12-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 The two paralogous copies of the YoeB-YefM toxin-antitoxin module in Staphylococcus aureus differ in DNA binding and recognition patterns. J.Biol.Chem., 298, 2022
7V5Z	Crystal structure of heterotetrameric complex of Sa2YoeB-Sa2YefM toxin-antitoxin from Staphylococcus aureus 分子名称: Antitoxin, Putative mRNA interferase YoeB 著者 Xue, L, Khan, M.H, Yue, J. 登録日 2021-08-18 公開日 2021-12-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 The two paralogous copies of the YoeB-YefM toxin-antitoxin module in Staphylococcus aureus differ in DNA binding and recognition patterns. J.Biol.Chem., 298, 2022
1STZ	Crystal structure of a hypothetical protein at 2.2 A resolution 分子名称: Heat-inducible transcription repressor hrcA homolog 著者 Liu, J, Adams, P.D, Shin, D.-H, Huang, C, Yokota, H, Jancarik, J, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC) 登録日 2004-03-25 公開日 2004-08-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization. J.Mol.Biol., 350, 2005
4ODU	Unliganded Fab structure of lipid A-specific antibody S1-15 分子名称: S1-15 Fab (IgG2b kappa) light chain, S1-15 Fab (IgG2b) heavy chain, SULFATE ION 著者 Haji-Ghassemi, O, Evans, S.V. 登録日 2014-01-10 公開日 2015-06-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem., 290, 2015
4Q2D	Crystal Structure of CRISPR-Associated protein in complex with 2'-Deoxyadenosine 5'-Triphosphate 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CRISPR-associated helicase Cas3, MAGNESIUM ION, ... 著者 Gong, B, Shin, M, Sun, J, van der Oost, J, Kim, J.-S. 登録日 2014-04-07 公開日 2014-11-19 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.771 Å) 主引用文献 Molecular insights into DNA interference by CRISPR-associated nuclease-helicase Cas3. Proc.Natl.Acad.Sci.USA, 111, 2014
6B0B	Crystal structure of human APOBEC3H 分子名称: APOBEC3H, MCherry, RNA (5'-R(*UP*AP*AP*AP*AP*AP*AP*A)-3'), ... 著者 Shaban, N.M, Shi, K, Banerjee, S, Harris, R.S, Aihara, H. 登録日 2017-09-14 公開日 2017-10-25 最終更新日 2019-12-04 実験手法 X-RAY DIFFRACTION (3.2800622 Å) 主引用文献 The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism. Mol. Cell, 69, 2018
6BBO	Crystal structure of human APOBEC3H/RNA complex 分子名称: APOBEC3H, GLYCEROL, MCherry fluorescent protein, ... 著者 Shaban, N.M, Shi, K, Banerjee, S, Harris, R.S, Aihara, H. 登録日 2017-10-19 公開日 2018-01-10 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.428 Å) 主引用文献 The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism. Mol. Cell, 69, 2018
2CO5	F93 FROM STIV, a winged-helix DNA-binding protein 分子名称: VIRAL PROTEIN F93 著者 Larson, E.T, Reiter, D, Lawrence, C.M. 登録日 2006-05-25 公開日 2006-05-31 最終更新日 2019-05-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A Winged-Helix Protein from Sulfolobus Turreted Icosahedral Virus Points Toward Stabilizing Disulfide Bonds in the Intracellular Proteins of a Hyperthermophilic Virus. Virology, 368, 2007
7FEO	Crystal structure of AtMBD5 MBD domain 分子名称: Methyl-CpG-binding domain-containing protein 5, SULFATE ION 著者 Zhou, M.Q, Wu, Z.B, Liu, K, Min, J.R, Structural Genomics Consortium (SGC) 登録日 2021-07-21 公開日 2021-12-29 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Family-wide Characterization of Methylated DNA Binding Ability of Arabidopsis MBDs. J.Mol.Biol., 434, 2022
5TS1	Crystal structure of MHC-I H2-KD complexed with peptides of Mycobacterial tuberculosis (YYQSGLSIV) 分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, GLYCEROL, ... 著者 Jiang, J, Natarajan, K, Margulies, D. 登録日 2016-10-27 公開日 2018-05-09 最終更新日 2020-02-05 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 MHC-restricted Ag85B-specific CD8+T cells are enhanced by recombinant BCG prime and DNA boost immunization in mice. Eur.J.Immunol., 2019
4P5U	Crystal structure of TatD 分子名称: Tat-linked quality control protein TatD 著者 Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S. 登録日 2014-03-20 公開日 2014-08-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and function of TatD exonuclease in DNA repair. Nucleic Acids Res., 42, 2014
6JQ1	Crystal Structure of DdrO from Deinococcus geothermalis 分子名称: LITHIUM ION, Transcriptional regulator, XRE family 著者 Lu, H, Hua, Y, Zhao, Y. 登録日 2019-03-28 公開日 2019-08-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and DNA damage-dependent derepression mechanism for the XRE family member DG-DdrO. Nucleic Acids Res., 47, 2019
6WC0	Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNTC-3' PAM 分子名称: CRISPR-associated endonuclease, Csn1 family, DNA (30-MER), ... 著者 Li, H, Das, A. 登録日 2020-03-28 公開日 2020-11-18 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.61 Å) 主引用文献 The molecular basis for recognition of 5'-NNNCC-3' PAM and its methylation state by Acidothermus cellulolyticus Cas9. Nat Commun, 11, 2020
5TRZ	Crystal structure of MHC-I H2-KD complexed with peptides of Mycobacterial tuberculosis (YQSGLSIVM) 分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, GLYCEROL, ... 著者 Jiang, J, Natarajan, K, Margulies, D. 登録日 2016-10-27 公開日 2018-05-09 最終更新日 2019-08-14 実験手法 X-RAY DIFFRACTION (2.247 Å) 主引用文献 MHC-restricted Ag85B-specific CD8+T cells are enhanced by recombinant BCG prime and DNA boost immunization in mice. Eur.J.Immunol., 2019
6WBR	Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM 分子名称: CRISPR-associated endonuclease, Csn1 family,CRISPR-associated endonuclease, Csn1 family, ... 著者 Li, H, Das, A. 登録日 2020-03-27 公開日 2020-11-18 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 The molecular basis for recognition of 5'-NNNCC-3' PAM and its methylation state by Acidothermus cellulolyticus Cas9. Nat Commun, 11, 2020
6X91	Crystal structure of MBP-fused human APOBEC1 分子名称: CACODYLATE ION, Maltodextrin-binding protein, C->U-editing enzyme APOBEC-1 chimera, ... 著者 Wolfe, A.D, Li, S.-X, Chen, X.S. 登録日 2020-06-02 公開日 2020-12-09 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.51 Å) 主引用文献 The structure of APOBEC1 and insights into its RNA and DNA substrate selectivity. NAR Cancer, 2, 2020
4ODT	Fab Structure of lipid A-specific antibody S1-15 in complex with lipid A carbohydrate backbone 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 2-amino-2-deoxy-4-O-phosphono-beta-D-glucopyranose-(1-6)-2-amino-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, S1-15 Fab (IgG2b kappa) light chain, ... 著者 Haji-Ghassemi, O, Evans, S.V. 登録日 2014-01-10 公開日 2015-06-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem., 290, 2015
3MX1	The structure of GIY-YIG endonuclease R.Eco29kI 分子名称: Eco29kIR 著者 Mak, A.N.S, Lambert, A.R, Stoddard, B.L. 登録日 2010-05-06 公開日 2010-09-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI. Structure, 18, 2010
4DOW	Structure of mouse ORC1 BAH domain bound to H4K20me2 分子名称: Histone H4, Origin recognition complex subunit 1 著者 Song, J, Patel, D.J. 登録日 2012-02-10 公開日 2012-03-07 最終更新日 2012-04-11 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature, 484, 2012
4Q2C	Crystal structure of CRISPR-associated protein 分子名称: CRISPR-associated helicase Cas3, NICKEL (II) ION 著者 Gong, B, Shin, M, Sun, J, van der Oost, J, Kim, J.-S. 登録日 2014-04-07 公開日 2014-11-19 最終更新日 2022-08-24 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Molecular insights into DNA interference by CRISPR-associated nuclease-helicase Cas3. Proc.Natl.Acad.Sci.USA, 111, 2014
3IHU	Crystal structure of DNA binding protein (YP_298823.1) from Ralstonia eutropha JMP134 at 1.92 A resolution 分子名称: CHLORIDE ION, GLYCEROL, Transcriptional regulator, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2009-07-30 公開日 2009-08-11 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Crystal structure of DNA binding protein (YP_298823.1) from Ralstonia eutropha JMP134 at 1.92 A resolution To be published
2Q8U	CRYSTAL STRUCTURE OF MRE11 FROM THERMOTOGA MARITIMA MSB8 (TM1635) AT 2.20 A RESOLUTION 分子名称: Exonuclease, putative 著者 Joint Center for Structural Genomics (JCSG) 登録日 2007-06-11 公開日 2007-06-26 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the first eubacterial Mre11 nuclease reveals novel features that may discriminate substrates during DNA repair. J.Mol.Biol., 397, 2010
4O66	Crystal Structure of SMARCAL1 HARP substrate recognition domain 分子名称: SODIUM ION, SULFATE ION, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 著者 Mason, A.C, Eichman, B.F. 登録日 2013-12-20 公開日 2014-05-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A structure-specific nucleic acid-binding domain conserved among DNA repair proteins. Proc.Natl.Acad.Sci.USA, 111, 2014
6TUN	Helicase domain complex 分子名称: CDK-activating kinase assembly factor MAT1, CHLORIDE ION, General transcription and DNA repair factor IIH helicase subunit XPD 著者 Sauer, F, Kisker, C. 登録日 2020-01-07 公開日 2020-11-11 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 In TFIIH the Arch domain of XPD is mechanistically essential for transcription and DNA repair. Nat Commun, 11, 2020

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