PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1SQ8	a variant 434 repressor DNA binding domain devoid of hydroxyl groups, NMR, 20 STRUCTURES 分子名称: dh434 著者 Iwai, H, Wider, G, Wuthrich, K. 登録日 2004-03-18 公開日 2004-07-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 NMR Structure of a Variant 434 Repressor DNA-binding Domain Devoid of Hydroxyl Groups J.Biomol.Nmr, 29, 2004
4IC1	Crystal structure of SSO0001 分子名称: IRON/SULFUR CLUSTER, MANGANESE (II) ION, Uncharacterized protein 著者 Nocek, B, Skarina, T, Lemak, S, Beloglazova, N, Flick, R, Brown, G, Savchenko, A, Joachimiak, A, Yakunin, A.F, Midwest Center for Structural Genomics (MCSG) 登録日 2012-12-09 公開日 2013-01-16 最終更新日 2014-07-02 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus. J.Am.Chem.Soc., 135, 2013
2QTQ	Crystal structure of a predicted dna-binding transcriptional regulator (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 A resolution 分子名称: 1,2-ETHANEDIOL, NITRATE ION, Transcriptional regulator, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2007-08-02 公開日 2007-08-21 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal structure of predicted DNA-binding transcriptional regulator (YP_496351.1) from Novosphingobium aromaticivorans DSM 12444 at 1.85 A resolution To be published
6XJF	X-ray crystal structure of Pyrococcus furiosus general transcription factor TFE-alpha (SeMet labeled protein) 分子名称: Transcription factor E 著者 Murakami, K.S, Jun, S.H. 登録日 2020-06-23 公開日 2020-07-08 最終更新日 2021-01-20 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
1DFA	CRYSTAL STRUCTURE OF PI-SCEI IN C2 SPACE GROUP 分子名称: PI-SCEI ENDONUCLEASE 著者 Hu, D, Crist, M, Duan, X, Quiocho, F.A, Gimble, F.S. 登録日 1999-11-18 公開日 1999-12-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking. J.Biol.Chem., 275, 2000
8HEY	One CVSC-binding penton vertex in HCMV B-capsid 分子名称: Capsid vertex component 1, Capsid vertex component 2, Major capsid protein, ... 著者 Li, Z, Yu, X. 登録日 2022-11-09 公開日 2023-11-01 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Cryo-electron microscopy structures of capsids and in situ portals of DNA-devoid capsids of human cytomegalovirus. Nat Commun, 14, 2023
8HEX	C5 portal vertex in HCMV B-capsid 分子名称: Capsid vertex component 1, Capsid vertex component 2, Major capsid protein, ... 著者 Li, Z, Yu, X. 登録日 2022-11-08 公開日 2023-11-01 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Cryo-electron microscopy structures of capsids and in situ portals of DNA-devoid capsids of human cytomegalovirus. Nat Commun, 14, 2023
4KIS	Crystal Structure of a LSR-DNA Complex 分子名称: CALCIUM ION, DNA (26-MER), Putative integrase [Bacteriophage A118], ... 著者 Rutherford, K, Yuan, P, Perry, K, Van Duyne, G.D. 登録日 2013-05-02 公開日 2013-07-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Attachment site recognition and regulation of directionality by the serine integrases. Nucleic Acids Res., 41, 2013
2MB7	Solution structure of MBD3 methylcytosine binding domain 分子名称: Methyl-CpG-binding domain protein 3 著者 Williams Jr, D.C, Scarsdale, J.N. 登録日 2013-07-26 公開日 2013-12-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Probing the Dynamic Distribution of Bound States for Methylcytosine-binding Domains on DNA. J.Biol.Chem., 289, 2014
1SD4	Crystal Structure of a SeMet derivative of BlaI at 2.0 A 分子名称: PENICILLINASE REPRESSOR, SULFATE ION 著者 Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L. 登録日 2004-02-13 公開日 2004-08-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
1SD6	Crystal Structure of Native MecI at 2.65 A 分子名称: Methicillin resistance regulatory protein mecI 著者 Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L. 登録日 2004-02-13 公開日 2004-02-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
5MMP	E. coli DNA Gyrase B 24 kDa ATPase domain in complex with 1-ethyl-3-[5-pyridin-4-yl-8-(pyridin-3-ylamino)-isoquinolin-3-yl]-urea 分子名称: 1-ethyl-3-[5-pyridin-4-yl-8-(pyridin-3-ylamino)isoquinolin-3-yl]urea, DNA gyrase subunit B 著者 Panchaud, P, Bruyere, T, Blumstein, A.-C, Bur, D, Chambovey, A, Ertel, E.A, Gude, M, Hubschwerlen, C, Jacob, L, Kimmerlin, T, Pfeifer, T, Prade, L, Seiler, P, Ritz, D, Rueedi, G. 登録日 2016-12-12 公開日 2017-04-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents. J. Med. Chem., 60, 2017
5MMN	E. coli DNA Gyrase B 24 kDa ATPase domain in complex with 1-ethyl-3-[8-methyl-5-(2-methyl-pyridin-4-yl)-isoquinolin-3-yl]-urea 分子名称: 1-ethyl-3-[8-methyl-5-(2-methylpyridin-4-yl)isoquinolin-3-yl]urea, DNA gyrase subunit B 著者 Panchaud, P, Bruyere, T, Blumstein, A.-C, Bur, D, Chambovey, A, Ertel, E.A, Gude, M, Hubschwerlen, C, Jacob, L, Kimmerlin, T, Pfeifer, T, Prade, L, Seiler, P, Ritz, D, Rueedi, G. 登録日 2016-12-12 公開日 2017-04-26 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents. J. Med. Chem., 60, 2017
7F45	Structure of an Anti-CRISPR protein 分子名称: AcrIF5 著者 Feng, Y. 登録日 2021-06-17 公開日 2022-03-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.52 Å) 主引用文献 AcrIF5 specifically targets DNA-bound CRISPR-Cas surveillance complex for inhibition. Nat.Chem.Biol., 18, 2022
7NRP	The crystal structure of a DNA:RNA hybrid duplex sequence CTTTTCTTTG 分子名称: CACODYLATE ION, DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'), RNA (5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3') 著者 Thorpe, C, Hardwick, J, McDonough, M.A, Hall, J.P, Baker, Y.R, El-Sagheer, A.H, Brown, T. 登録日 2021-03-04 公開日 2022-06-22 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 An LNA-amide modification that enhances the cell uptake and activity of phosphorothioate exon-skipping oligonucleotides. Nat Commun, 13, 2022
1MUS	crystal structure of Tn5 transposase complexed with resolved outside end DNA 分子名称: 1,2-ETHANEDIOL, DNA non-transferred strand, DNA transferred strand, ... 著者 Holden, H.M, Thoden, J.B, Steiniger-White, M, Reznikoff, W.S, Lovell, S, Rayment, I. 登録日 2002-09-24 公開日 2002-09-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure/function insights into Tn5 transposition. Curr.Opin.Struct.Biol., 14, 2004
4FW2	Crystal structure of RSV three-domain integrase with disordered N-terminal domain 分子名称: Integrase 著者 Shi, K, Aihara, H. 登録日 2012-06-29 公開日 2013-05-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 A possible role for the asymmetric C-terminal domain dimer of Rous sarcoma virus integrase in viral DNA binding. Plos One, 8, 2013
5ZJ4	Guanine-specific ADP-ribosyltransferase 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADP-ribosyltransferase 著者 Yoshida, T, Tsuge, H. 登録日 2018-03-19 公開日 2018-08-08 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.49739277 Å) 主引用文献 Substrate N2atom recognition mechanism in pierisin family DNA-targeting, guanine-specific ADP-ribosyltransferase ScARP. J. Biol. Chem., 293, 2018
1L3A	Structure of the plant transcriptional regulator PBF-2 分子名称: p24: plant transcriptional regulator PBF-2 著者 Desveaux, D, Allard, J, Brisson, N, Sygusch, J. 登録日 2002-02-26 公開日 2002-06-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 A new family of plant transcription factors displays a novel ssDNA-binding surface. Nat.Struct.Biol., 9, 2002
8Q40	Crystal structure of cA4 activated Can2 in complex with a cleaved DNA substrate 分子名称: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*TP*CP*A)-3'), DUF1887 family protein, ... 著者 Jungfer, K, Sigg, A, Jinek, M. 登録日 2023-08-04 公開日 2023-11-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q42	Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-A DNA 分子名称: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*AP*AP*AP*A)-3'), DUF1887 family protein, ... 著者 Jungfer, K, Sigg, A, Jinek, M. 登録日 2023-08-04 公開日 2023-11-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
8Q43	Crystal structure of cA4-bound Can2 (E341A) in complex with oligo-C DNA 分子名称: Cyclic tetraadenosine monophosphate (cA4), DNA (5'-D(*CP*CP*CP*CP*C)-3'), DUF1887 family protein, ... 著者 Jungfer, K, Sigg, A, Jinek, M. 登録日 2023-08-04 公開日 2023-11-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Substrate selectivity and catalytic activation of the type III CRISPR ancillary nuclease Can2. Nucleic Acids Res., 52, 2024
3NKD	Structure of CRISP-associated protein Cas1 from Escherichia coli str. K-12 分子名称: CRISPR-associated protein Cas1 著者 Nocek, B, Skarina, T, Beloglazova, N, Savchenko, A, Joachimiak, A, Yakunin, A. 登録日 2010-06-18 公開日 2010-08-25 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol.Microbiol., 79, 2011
2OZE	The Crystal structure of Delta protein of pSM19035 from Streptoccocus pyogenes 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, Orf delta', ... 著者 Cicek, A, Weihofen, W, Saenger, W. 登録日 2007-02-26 公開日 2008-03-11 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Streptococcus pyogenes pSM19035 requires dynamic assembly of ATP-bound ParA and ParB on parS DNA during plasmid segregation. Nucleic Acids Res., 36, 2008
7T31	X-ray Structure of Clostridiodies difficile PilW 分子名称: Maltose/maltodextrin-binding periplasmic protein,Putative pilin protein chimera 著者 Ronish, L.A, Piepenbrink, K.H. 登録日 2021-12-06 公開日 2022-10-19 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Recognition of extracellular DNA by type IV pili promotes biofilm formation by Clostridioides difficile. J.Biol.Chem., 298, 2022

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