PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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7MTT	Crystal structure of colibactin self-resistance protein ClbS in complex with two molecules of CHES 分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Colibactin self-protection protein ClbS 著者 Tripathi, P, Bruner, S.D. 登録日 2021-05-13 公開日 2021-05-26 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural Basis for the Interactions of the Colibactin Resistance Gene Product ClbS with DNA. Biochemistry, 60, 2021
4I2E	Ternary complex of mouse TdT with ssDNA and AMPcPP 分子名称: 5'-D(*AP*AP*AP*AP*A)-3', COBALT (II) ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ... 著者 Gouge, J, Delarue, M. 登録日 2012-11-21 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
8HWF	Cryo-EM Structure of D5 ADP-ssDNA form 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... 著者 Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H. 登録日 2022-12-29 公開日 2024-01-10 最終更新日 2024-01-31 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus. Nat.Struct.Mol.Biol., 31, 2024
4I2F	Binary complex of mouse TdT with ssDNA 分子名称: 5'-D(P*AP*AP*AP*AP*A)-3', DNA nucleotidylexotransferase, MAGNESIUM ION, ... 著者 Gouge, J, Delarue, M. 登録日 2012-11-21 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
7UJN	Structure of Human SAMHD1 with Non-Hydrolysable dGTP Analog 分子名称: 2'-deoxyguanosine-5'-O-(1-thiotriphosphate), Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 著者 Huynh, K.W, Ammirati, M, Han, S. 登録日 2022-03-31 公開日 2022-07-20 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 Phosphorylation of SAMHD1 Thr592 increases C-terminal domain dynamics, tetramer dissociation and ssDNA binding kinetics. Nucleic Acids Res., 50, 2022
4I28	Binary complex of mouse TdT with ssDNA and Zn++ 分子名称: 5'-D(*AP*AP*AP*AP*A)-3', DNA nucleotidylexotransferase, MAGNESIUM ION, ... 著者 Gouge, J, Delarue, M. 登録日 2012-11-21 公開日 2013-07-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism. J.Mol.Biol., 425, 2013
6Z6D	Crystal structure of the HK97 bacteriophage large terminase 分子名称: BROMIDE ION, Terminase large subunit 著者 Fung, H.K.H, Chechik, M, Baumann, C.G, Antson, A.A. 登録日 2020-05-28 公開日 2021-06-09 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis of DNA packaging by a ring-type ATPase from an archetypal viral system. Nucleic Acids Res., 50, 2022
5G48	H.pylori Beta clamp in complex with Diflunisal 分子名称: 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID, DNA POLYMERASE III SUBUNIT BETA 著者 Pandey, P, Gourinath, S. 登録日 2016-05-06 公開日 2017-06-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Targeting the beta-clamp in Helicobacter pylori with FDA-approved drugs reveals micromolar inhibition by diflunisal. FEBS Lett., 591, 2017
1GKU	Reverse gyrase from Archaeoglobus fulgidus 分子名称: REVERSE GYRASE 著者 Rodriguez, A.C, Stock, D. 登録日 2001-08-21 公開日 2002-02-11 最終更新日 2018-01-24 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of Reverse Gyrase: Insights Into the Positive Supercoiling of DNA. Embo J., 21, 2002
6GWS	Crystal structure of human PCNA in complex with three p15 peptides 分子名称: PCNA-associated factor, Proliferating cell nuclear antigen 著者 De March, M, Merino, N, Gonzalez-Magana, A, Romano-Moreno, M, Onesti, S, Blanco, F.J, De Biasio, A. 登録日 2018-06-25 公開日 2018-08-22 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 p15PAF binding to PCNA modulates the DNA sliding surface. Nucleic Acids Res., 46, 2018
7WKP	ICP1 Csy4 分子名称: 3' stem loop crRNA, Csy4 著者 Zhang, M, Peng, R. 登録日 2022-01-10 公開日 2023-04-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Mechanistic insights into DNA binding and cleavage by a compact type I-F CRISPR-Cas system in bacteriophage. Proc.Natl.Acad.Sci.USA, 120, 2023
1GL9	Archaeoglobus fulgidus reverse gyrase complexed with ADPNP 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, REVERSE GYRASE 著者 Rodriguez, A.C, Stock, D. 登録日 2001-08-30 公開日 2002-02-11 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Crystal Structure of Reverse Gyrase: Insights Into the Positive Supercoiling of DNA. Embo J., 21, 2002
7WKO	ICP1 Csy1-2 complex 分子名称: Csy1, Csy2 著者 Zhang, M, Peng, R. 登録日 2022-01-10 公開日 2023-04-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mechanistic insights into DNA binding and cleavage by a compact type I-F CRISPR-Cas system in bacteriophage. Proc.Natl.Acad.Sci.USA, 120, 2023
5XN1	HIV-1 reverse transcriptase Q151M:DNA:entecavir-triphosphate ternary complex 分子名称: 38-MER DNA aptamer, GLYCEROL, MAGNESIUM ION, ... 著者 Yasutake, Y, Tamura, N, Hayashi, H, Maeda, K. 登録日 2017-05-17 公開日 2018-02-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.446 Å) 主引用文献 HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir. Sci Rep, 8, 2018
7DUT	Structure of Sulfolobus solfataricus SegA protein 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SOJ protein (Soj) 著者 Yen, C.Y, Lin, M.G, Hsiao, C.D, Sun, Y.J. 登録日 2021-01-11 公開日 2021-12-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Chromosome segregation in Archaea: SegA- and SegB-DNA complex structures provide insights into segrosome assembly. Nucleic Acids Res., 49, 2021
7DV3	Structure of Sulfolobus solfataricus SegA-AMPPNP protein 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SOJ protein (Soj) 著者 Yen, C.Y, Lin, M.G, Wu, C.T, Hsiao, C.D, Sun, Y.J. 登録日 2021-01-12 公開日 2021-12-22 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Chromosome segregation in Archaea: SegA- and SegB-DNA complex structures provide insights into segrosome assembly. Nucleic Acids Res., 49, 2021
8JFT	Cryo-EM structure of SaCas9-AcrIIA15 CTD-sgRNA complex 分子名称: AcrIIA15, CRISPR-associated endonuclease Cas9, sgRNA of SaCas9 著者 Deng, X, Wang, Y. 登録日 2023-05-18 公開日 2024-02-28 最終更新日 2024-09-11 実験手法 ELECTRON MICROSCOPY (3.31 Å) 主引用文献 An anti-CRISPR that represses its own transcription while blocking Cas9-target DNA binding. Nat Commun, 15, 2024
3TND	Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex 分子名称: Antitoxin VapB, SODIUM ION, SULFATE ION, ... 著者 Dienemann, C, Boggild, A, Winther, K.S, Gerdes, K, Brodersen, D.E. 登録日 2011-09-01 公開日 2011-11-02 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of the VapBC Toxin-Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly. J.Mol.Biol., 414, 2011
1EQZ	X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION 分子名称: 146 NUCLEOTIDES LONG DNA, CACODYLATE ION, CHLORIDE ION, ... 著者 Hanson, B.L, Harp, J.M, Timm, D.E, Bunick, G.J. 登録日 2000-04-06 公開日 2000-04-17 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Asymmetries in the nucleosome core particle at 2.5 A resolution. Acta Crystallogr.,Sect.D, 56, 2000
6AHT	Plasmid partitioning protein TubR from Bacillus cereus 分子名称: Conserved hypothetical plasmid protein 著者 Hayashi, I. 登録日 2018-08-20 公開日 2019-06-26 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Cooperative DNA Binding of the Plasmid Partitioning Protein TubR from the Bacillus cereus pXO1 Plasmid. J.Mol.Biol., 430, 2018
6S3O	Crystal structure of helicase Pif1 from Thermus oshimai in complex with ssDNA (dT)18 and ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... 著者 Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G. 登録日 2019-06-25 公開日 2021-01-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.974 Å) 主引用文献 Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition. Nucleic Acids Res., 49, 2021
1AE9	STRUCTURE OF THE LAMBDA INTEGRASE CATALYTIC CORE 分子名称: LAMBDA INTEGRASE 著者 Kwon, H.J, Tirumalai, R, Landy, A, Ellenberger, T. 登録日 1997-03-06 公開日 1997-11-19 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Flexibility in DNA recombination: structure of the lambda integrase catalytic core. Science, 276, 1997
2ZOY	The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum 分子名称: GLYCEROL, Transcriptional regulator 著者 Itou, H, Yao, M, Watanabe, N, Tanaka, I. 登録日 2008-06-20 公開日 2008-07-08 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis J.Biol.Chem., 280, 2005
6S3I	Crystal structure of helicase Pif1 from Thermus oshimai in complex with ssDNA (dT)18 and ADP-MgF4 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (5'-D(P*TP*TP*TP*TP*T)-3'), MAGNESIUM ION, ... 著者 Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G. 登録日 2019-06-25 公開日 2021-01-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.455 Å) 主引用文献 Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition. Nucleic Acids Res., 49, 2021
3V9S	Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site 分子名称: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ... 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2011-12-28 公開日 2012-07-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012

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