PDB: 19129 件ウェブページステータス検索Chemie searchBIRD

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6SXB	XPF-ERCC1 Cryo-EM Structure, DNA-Bound form 分子名称: DNA (5'-D(*TP*CP*AP*GP*CP*AP*TP*CP*TP*G)-3'), DNA (5'-D(P*CP*AP*GP*AP*TP*GP*CP*TP*GP*A)-3'), DNA excision repair protein ERCC-1, ... 著者 Jones, M.L, Briggs, D.C, McDonald, N.Q. 登録日 2019-09-25 公開日 2020-03-11 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (7.9 Å) 主引用文献 Cryo-EM structures of the XPF-ERCC1 endonuclease reveal how DNA-junction engagement disrupts an auto-inhibited conformation. Nat Commun, 11, 2020
6SXA	XPF-ERCC1 Cryo-EM Structure, Apo-form 分子名称: DNA excision repair protein ERCC-1, DNA repair endonuclease XPF 著者 Jones, M.L, Briggs, D.C, McDonald, N.Q. 登録日 2019-09-25 公開日 2020-03-11 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Cryo-EM structures of the XPF-ERCC1 endonuclease reveal how DNA-junction engagement disrupts an auto-inhibited conformation. Nat Commun, 11, 2020
6AKF	Crystal structure of mouse claudin-3 P134A mutant in complex with C-terminal fragment of Clostridium perfringens enterotoxin 分子名称: Claudin-3, Heat-labile enterotoxin B chain 著者 Nakamura, S, Irie, K, Fujiyoshi, Y. 登録日 2018-08-31 公開日 2019-02-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Morphologic determinant of tight junctions revealed by claudin-3 structures. Nat Commun, 10, 2019
5I0W	IRON AND COPPER-BOUND P19 FROM CAMPYLOBACTER JEJUNI UNDER REDUCING CONDITIONS 分子名称: CHLORIDE ION, COPPER (I) ION, FE (II) ION, ... 著者 Chan, A.C, Murphy, M.E. 登録日 2016-02-04 公開日 2017-02-08 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A copper site is required for iron transport by the periplasmic proteins P19 and FetP. Metallomics, 12, 2020
4XC5	CRYSTAL STRUCTURE OF THE T1L REOVIRUS ATTACHMENT PROTEIN SIGMA1 分子名称: ACETATE ION, CHLORIDE ION, GLYCEROL, ... 著者 Reiss, K, Stehle, T. 登録日 2014-12-17 公開日 2015-04-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of Serotype 1 Reovirus Attachment Protein sigma 1 in Complex with Junctional Adhesion Molecule A Reveals a Conserved Serotype-Independent Binding Epitope. J.Virol., 89, 2015
4GM2	The crystal structure of a peptidase from plasmodium falciparum 分子名称: ATP-dependent Clp protease proteolytic subunit 著者 El Bakkouri, M, Jung, P, Wernimont, A.K, Calmettes, C, Hui, R, Houry, W.A, Structural Genomics Consortium (SGC) 登録日 2012-08-15 公開日 2012-12-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Insights into the Inactive Subunit of the Apicoplast-localized Caseinolytic Protease Complex of Plasmodium falciparum. J.Biol.Chem., 288, 2013
4GR7	The human W42R Gamma D-Crystallin Mutant Structure at 1.7A Resolution 分子名称: Gamma-crystallin D, PHOSPHATE ION 著者 Ji, F, Jung, J, Koharudin, L.M.I, Gronenborn, A.M. 登録日 2012-08-24 公開日 2012-11-07 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The human W42R gamma D-crystallin mutant structure provides a link between congenital and age-related cataracts. J.Biol.Chem., 288, 2013
8ABD	Solution structure of Phen-DC3 intercalating into a quadruplex-duplex hybrid 分子名称: DNA (36-MER), N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide 著者 Vianney, Y.M, Weisz, K. 登録日 2022-07-04 公開日 2022-11-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 High-affinity binding at quadruplex-duplex junctions: rather the rule than the exception. Nucleic Acids Res., 50, 2022
8ABN	Solution structure of a phenyl-indoloquinoline intercalating into a quadruplex-duplex hybrid 分子名称: DNA (27-MER), diethyl-[3-[[4-(4,5,9-trimethyl-10H-indolo[3,2-b]quinolin-5-ium-11-yl)phenyl]carbonylamino]propyl]azanium 著者 Vianney, Y.M, Weisz, K. 登録日 2022-07-04 公開日 2022-11-16 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 High-affinity binding at quadruplex-duplex junctions: rather the rule than the exception. Nucleic Acids Res., 50, 2022
5C6K	Bacteriophage P2 integrase catalytic domain 分子名称: Integrase 著者 Skaar, K, Claesson, M, Odegrip, R, Eriksson, J, Hogbom, M, Haggard-Ljungquist, E, Stenmark, P. 登録日 2015-06-23 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of the bacteriophage P2 integrase catalytic domain. Febs Lett., 589, 2015
7BEW	Glyceraldehyde 3-phosphate dehydrogenase from Campylobacter jejeuni - NAD(P) complex 分子名称: DI(HYDROXYETHYL)ETHER, Glyceraldehyde-3-phosphate dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... 著者 Moody, P.C.E, Ayna, A. 登録日 2020-12-29 公開日 2022-01-12 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Crystal Structures of a dual coenzyme specific glyceraldehyde-3-phosphate dehydrogenase from the enteric pathogen Campylobacter jejuni To Be Published
7BKY	Endothiapepsin structure obtained at 298K with fragment BTB09871 bound from a dataset collected with JUNGFRAU detector 分子名称: DIMETHYL SULFOXIDE, Endothiapepsin, PENTAETHYLENE GLYCOL, ... 著者 Engilberge, S, Huang, C.-Y, Leonarski, F, Wojdyla, J.A, Marsh, M, Olieric, V, Wang, M. 登録日 2021-01-17 公開日 2022-03-02 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Endothiapepsin structure obtained at 298K with fragment BTB09871 bound from a dataset collected with JUNGFRAU detector To Be Published
6IS9	Crystal Structure of ZmMOC1 分子名称: Monokaryotic chloroplast 1 著者 Lin, Z, Lin, H, Zhang, D, Yuan, C. 登録日 2018-11-15 公開日 2019-10-23 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Structural basis of sequence-specific Holliday junction cleavage by MOC1. Nat.Chem.Biol., 15, 2019
5JXL	Cryo-EM structure of the flagellar hook of Campylobacter jejuni 分子名称: flagellar hook protein FlgE 著者 Matsunami, H, Wolf, M, Samatey, F.A. 登録日 2016-05-13 公開日 2016-11-16 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Complete structure of the bacterial flagellar hook reveals extensive set of stabilizing interactions Nat Commun, 7, 2016
1OKA	RNA/DNA CHIMERA, NMR 分子名称: RNA/DNA CHIMERA (R(CCCA)D(AATGA)(DOT)D(TCATTTGGG)) 著者 Salazar, M, Fedoroff, O.Y, Reid, B.R. 登録日 1996-04-19 公開日 1996-11-08 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of chimeric duplex junctions: solution conformation of the retroviral Okazaki-like fragment r(ccca)d(AATGA).d(TCATTTGGG) from Moloney murine leukemia virus. Biochemistry, 35, 1996
5I0V	IRON AND COPPER-BOUND P19 FROM CAMPYLOBACTER JEJUNI UNDER OXIDIZING CONDITIONS 分子名称: CHLORIDE ION, COPPER (II) ION, FE (III) ION, ... 著者 Chan, A.C, Murphy, M.E. 登録日 2016-02-04 公開日 2017-02-08 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 A copper site is required for iron transport by the periplasmic proteins P19 and FetP. Metallomics, 12, 2020
5DOR	P2 Integrase catalytic domain in space group P21 分子名称: Integrase, PHOSPHATE ION, ZINC ION 著者 Skaar, K, Claesson, M, Odegrip, R, Haggard-Ljungquist, E, Hogbom, M. 登録日 2015-09-11 公開日 2015-12-02 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the bacteriophage P2 integrase catalytic domain. Febs Lett., 589, 2015
5A5V	A complex of the synthetic siderophore analogue Fe(III)-6-LICAM with the CeuE periplasmic protein from Campylobacter jejuni 分子名称: ENTEROCHELIN UPTAKE PERIPLASMIC BINDING PROTEIN, FE (III) ION, N,N'-hexane-1,4-diylbis(2,3-dihydroxybenzamide) 著者 Blagova, E, Hughes, A, Moroz, O.V, Raines, D.J, Wilde, E.J, Turkenburg, J.P, Duhme-Klair, A.-K, Wilson, K.S. 登録日 2015-06-22 公開日 2016-07-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Interactions of the periplasmic binding protein CeuE with Fe(III) n-LICAM(4-) siderophore analogues of varied linker length. Sci Rep, 7, 2017
7SQE	Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with Jun9-84-3 inhibitor 分子名称: (1R)-N-[(1H-indol-3-yl)methyl]-N-methyl-1-(naphthalen-1-yl)ethan-1-amine, 1,2-ETHANEDIOL, CHLORIDE ION, ... 著者 Osipiuk, J, Tesar, C, Endres, M, Wang, J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2021-11-05 公開日 2021-11-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Papain-Like Protease of SARS CoV-2, C111S mutant, in complex with Jun9-84-3 inhibitor To be Published
5F5Q	Crystal structure of Canavalia virosa lectin in complex with alpha-methyl-mannoside 分子名称: CALCIUM ION, Concanavalin-A, MANGANESE (II) ION, ... 著者 Osterne, V.J.S, Silva-Filho, J.C, Pinto-Junior, V.R, Santiago, M.Q, Lossio, C.F, Delatorre, P, Nascimento, K.S, Cavada, B.S. 登録日 2015-12-04 公開日 2016-10-26 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural characterization of a lectin from Canavalia virosa seeds with inflammatory and cytotoxic activities. Int.J.Biol.Macromol., 94, 2016
5EYX	Monoclinic Form of Centrolobium tomentosum seed lectin (CTL) complexed with Man1-3Man-OMe. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Centrolobium tomentosum lectin, ... 著者 Almeida, A.C, Osterne, V.J.S, Santiago, M.Q, Pinto-Junior, V.R, Silva-Filho, J.C, Lossio, C.F, Almeida, R.P.H, Teixeira, C.S, Delatorre, P, Rocha, B.A.M, Santiago, K.S, Cavada, B.S. 登録日 2015-11-25 公開日 2016-03-16 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural analysis of Centrolobium tomentosum seed lectin with inflammatory activity. Arch.Biochem.Biophys., 596, 2016
2H0F	Crystal Structure of PucM in the presence of 8-azaxanthine 分子名称: 8-AZAXANTHINE, Transthyretin-like protein pucM 著者 Rhee, S. 登録日 2006-05-15 公開日 2006-06-27 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural and functional analysis of PucM, a hydrolase in the ureide pathway and a member of the transthyretin-related protein family. Proc.Natl.Acad.Sci.Usa, 103, 2006
2H0E	Crystal Structure of PucM in the absence of substrate 分子名称: GLYCEROL, Transthyretin-like protein pucM 著者 Rhee, S. 登録日 2006-05-14 公開日 2006-06-27 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural and functional analysis of PucM, a hydrolase in the ureide pathway and a member of the transthyretin-related protein family. Proc.Natl.Acad.Sci.Usa, 103, 2006
5U38	Crystal structure of native lectin from Platypodium elegans seeds (PELa) complexed with Man1-3Man-OMe. 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Lectin, ... 著者 Silva, I.B, Araripe, D.A, Neco, A.H.B, Pinto-Junior, V.R, Osterne, V.J.S, Santiago, M.Q, Silva-Filho, J.C, Leal, R.B, Rocha, C.R.C, Nascimento, K.S, Cavada, B.S. 登録日 2016-12-01 公開日 2017-10-04 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural studies and nociceptive activity of a native lectin from Platypodium elegans seeds (nPELa). Int. J. Biol. Macromol., 107, 2018
5U3E	Crystal Structure of Native Lectin from Canavalia bonariensis Seeds (CaBo) complexed with alpha-methyl-D-mannoside 分子名称: CALCIUM ION, Canavalia bonariensis seed lectin, MANGANESE (II) ION, ... 著者 Silva, M.T.L, Osterne, V.J.S, Pinto-Junior, V.R, Santiago, M.Q, Araripe, D.A, Neco, A.H.B, Silva-Filho, J.C, Martins, J.L, Rocha, C.R.C, Leal, R.B, Nascimento, K.S, Cavada, B.S. 登録日 2016-12-02 公開日 2017-08-23 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Canavalia bonariensis lectin: Molecular bases of glycoconjugates interaction and antiglioma potential. Int. J. Biol. Macromol., 106, 2018

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