PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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8DLF	EBNA1 DNA binding domain (DBD) (458-617)+2 repeats of family repeat (FR) region 分子名称: 2XFR DNA (56-MER), Epstein-Barr nuclear antigen 1 著者 Mei, Y, Lieberman, P.M, Murakami, K. 登録日 2022-07-07 公開日 2023-05-17 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.23 Å) 主引用文献 Cryo-EM Structure and Functional Studies of EBNA1 Binding to the Family of Repeats and Dyad Symmetry Elements of Epstein-Barr Virus oriP. J.Virol., 96, 2022
4NE3	Human MHF1-MHF2 complex 分子名称: Centromere protein S, Centromere protein X 著者 Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y. 登録日 2013-10-28 公開日 2013-12-25 最終更新日 2014-02-12 実験手法 X-RAY DIFFRACTION (1.8007 Å) 主引用文献 The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes. Nat Commun, 5, 2014
5VPC	Transcription factor FosB/JunD bZIP domain in its oxidized form, type-II crystal 分子名称: CHLORIDE ION, Protein fosB, SODIUM ION, ... 著者 Yin, Z, Machius, M.C, Rudenko, G. 登録日 2017-05-04 公開日 2017-09-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.498 Å) 主引用文献 Activator Protein-1: redox switch controlling structure and DNA-binding. Nucleic Acids Res., 45, 2017
5VPB	Transcription factor FosB/JunD bZIP domain in its oxidized form, type-I crystal 分子名称: CHLORIDE ION, Protein fosB, Transcription factor jun-D 著者 Yin, Z, Machius, M, Rudenko, G. 登録日 2017-05-04 公開日 2017-09-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.691 Å) 主引用文献 Activator Protein-1: redox switch controlling structure and DNA-binding. Nucleic Acids Res., 45, 2017
5VPD	Transcription factor FosB/JunD bZIP domain in its oxidized form, type-III crystal 分子名称: CHLORIDE ION, Protein fosB, SODIUM ION, ... 著者 Yin, Z, Machius, M, Rudenko, G. 登録日 2017-05-04 公開日 2017-09-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 Activator Protein-1: redox switch controlling structure and DNA-binding. Nucleic Acids Res., 45, 2017
4NE6	Human MHF1-MHF2 complex 分子名称: Centromere protein S, Centromere protein X 著者 Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y. 登録日 2013-10-28 公開日 2013-12-25 最終更新日 2014-02-12 実験手法 X-RAY DIFFRACTION (2.1001 Å) 主引用文献 The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes. Nat Commun, 5, 2014
5VPA	Transcription factor FosB/JunD bZIP domain 分子名称: CHLORIDE ION, Protein fosB, SODIUM ION, ... 著者 Yin, Z, Machius, M, Rudenko, G. 登録日 2017-05-04 公開日 2017-09-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.83 Å) 主引用文献 Activator Protein-1: redox switch controlling structure and DNA-binding. Nucleic Acids Res., 45, 2017
1LWM	Solution Structure of the Sequence-Non-Specific HMGB protein NHP6A 分子名称: NONHISTONE CHROMOSOMAL PROTEIN 6A 著者 Masse, J.E, Wong, B, Yen, Y.-M, Allain, F.H.-T, Johnson, R.C, Feigon, J. 登録日 2002-05-31 公開日 2002-10-16 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The S. cerevisiae architectural HMGB protein NHP6A complexed with DNA: DNA and protein conformational changes upon binding J.Mol.Biol., 323, 2002
4NE5	Human MHF1-MHF2 complex 分子名称: Centromere protein S, Centromere protein X 著者 Zhao, Q, Saro, D, Sachpatzidis, A, Sung, P, Xiong, Y. 登録日 2013-10-28 公開日 2013-12-25 最終更新日 2014-02-12 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The MHF complex senses branched DNA by binding a pair of crossover DNA duplexes. Nat Commun, 5, 2014
2D9A	Solution Structure of RSGI RUH-050, a myb DNA-binding domain in mouse cDNA 分子名称: Myb-related protein B 著者 Doi-Katayama, Y, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-12-09 公開日 2006-06-09 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution Structure of RSGI RUH-050, a myb DNA-binding domain in mouse cDNA To be Published
8X7U	MCM in complex with dsDNA in presence of ATP. 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, mini-chromosome maintenance complex 3 著者 Ma, J, Yi, G, Ye, M, MacGregor-Chatwin, C, Sheng, Y, Lu, Y, Li, M, Gilbert, R.J.C, Zhang, P. 登録日 2023-11-25 公開日 2024-01-17 実験手法 ELECTRON MICROSCOPY (3.57 Å) 主引用文献 MCM in complex with dsDNA in presence of ATP To Be Published
5DWC	Crystal structure of restriction endonuclease AgeI 分子名称: Type-2 restriction enzyme AgeI 著者 Tamulaitiene, G, Ramonaite, I, Grazulis, S, Siksnys, V. 登録日 2015-09-22 公開日 2016-09-28 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Restriction endonuclease AgeI is a monomer which dimerizes to cleave DNA. Nucleic Acids Res., 45, 2017
5LOI	Crystal structure of Myceliophthora thermophila Rad26 (residues 373-841) 分子名称: Rad26 著者 Andersen, K.R. 登録日 2016-08-09 公開日 2017-03-29 最終更新日 2017-05-31 実験手法 X-RAY DIFFRACTION (3.153 Å) 主引用文献 Insights into Rad3 kinase recruitment from the crystal structure of the DNA damage checkpoint protein Rad26. J. Biol. Chem., 292, 2017
7B4F	Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ). Human p53DBD-R282W mutant bound to DNA: R282W-MQ (I) 分子名称: Cellular tumor antigen p53, DNA target, FORMIC ACID, ... 著者 Rozenberg, H, Degtjarik, O, Shakked, Z. 登録日 2020-12-02 公開日 2021-12-08 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ). Nat Commun, 12, 2021
5FQ5	Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing 分子名称: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1, MAGNESIUM ION, NON-TARGET DNA STRAND, ... 著者 Olieric, V, Weinert, T, Finke, A, Anders, C, Jinek, M, Wang, M. 登録日 2015-12-07 公開日 2016-03-23 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.136 Å) 主引用文献 Data-Collection Strategy for Challenging Native Sad Phasing. Acta Crystallogr.,Sect.D, 72, 2016
3IAG	CSL (RBP-Jk) bound to HES-1 nonconsensus site 分子名称: 1,2-ETHANEDIOL, 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*AP*CP*AP*CP*GP*AP*T)-3', 5'-D(*TP*TP*AP*TP*CP*GP*TP*GP*TP*GP*AP*AP*AP*GP*A)-3', ... 著者 Friedmann, D.R, Kovall, R.A. 登録日 2009-07-13 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Thermodynamic and structural insights into CSL-DNA complexes. Protein Sci., 19, 2010
8OO9	CryoEM Structure INO80core Hexasome complex ATPase-DNA refinement state1 分子名称: ADENOSINE-5'-DIPHOSPHATE, Chromatin-remodeling ATPase INO80, DNA strand 1, ... 著者 Zhang, M, Jungblut, A, Hoffmann, T, Eustermann, S. 登録日 2023-04-04 公開日 2023-07-26 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling. Science, 381, 2023
5XAY	Crystal structure of full length tylp, a tetr regulator from streptomyces fradiae 分子名称: Gamma-butyrolactone receptor protein 著者 Ray, S, Panjikar, S, Anand, R. 登録日 2017-03-15 公開日 2017-08-02 最終更新日 2017-09-27 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Functional insights into the mode of DNA and ligand binding of the TetR family regulator TylP from Streptomyces fradiae J. Biol. Chem., 292, 2017
3M89	Structure of TubZ-GTP-g-S 分子名称: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, FtsZ/tubulin-related protein 著者 Ni, L, Xu, W, Schumacher, M.A. 登録日 2010-03-17 公開日 2010-07-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 From the Cover: Plasmid protein TubR uses a distinct mode of HTH-DNA binding and recruits the prokaryotic tubulin homolog TubZ to effect DNA partition. Proc.Natl.Acad.Sci.USA, 107, 2010
6DA1	ETS1 in complex with synthetic SRR mimic 分子名称: Protein C-ets-1, SULFATE ION, serine-rich region (SRR) peptide 著者 Perez-Borrajero, C, Okon, M, Lin, C.S, Scheu, K, Murphy, M.E.P, Graves, B.J, McIntosh, L.P. 登録日 2018-05-01 公開日 2019-01-16 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.000127 Å) 主引用文献 The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor. J. Mol. Biol., 431, 2019
6DAT	ETS1 in complex with synthetic SRR mimic 分子名称: Protein C-ets-1, SULFATE ION, serine-rich region (SRR) peptide 著者 Perez-Borrajero, C, Okon, M, Lin, C.S, Scheu, K, Murphy, M.E.P, Graves, B.J, McIntosh, L.P. 登録日 2018-05-02 公開日 2019-01-16 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.35002637 Å) 主引用文献 The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor. J. Mol. Biol., 431, 2019
5XAZ	Crystal structure of full length native tylp, a tetr regulator from streptomyces fradiae 分子名称: Gamma-butyrolactone receptor protein 著者 Ray, S, Panjikar, S, Anand, R. 登録日 2017-03-15 公開日 2017-08-02 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Functional insights into the mode of DNA and ligand binding of the TetR family regulator TylP from Streptomyces fradiae J. Biol. Chem., 292, 2017
2CKX	Crystal structure of NgTRF1, double-stranded telomeric repeat binding factor from Nicotiana tabacum. 分子名称: TELOMERE BINDING PROTEIN TBP1 著者 Byun, J.-S, Cho, H.-S. 登録日 2006-04-24 公開日 2007-05-29 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the DNA-Binding Domain of Ngtrf1 Reveals Unique Features of Plant Telomere-Binding Proteins. Nucleic Acids Res., 36, 2008
7NMB	cytoplasmic domain of Vibrio cholerae ToxR 分子名称: Cholera toxin transcriptional activator 著者 Gubensaek, N, Zangger, K, Hartlmueller, C, Madl, T. 登録日 2021-02-23 公開日 2021-10-20 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural and DNA-binding properties of the cytoplasmic domain of Vibrio cholerae transcription factor ToxR. J.Biol.Chem., 297, 2021
5IHE	D-family DNA polymerase - DP1 subunit (3'-5' proof-reading exonuclease) 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, ACETATE ION, ... 著者 Sauguet, L, Raia, P, De Larue, M. 登録日 2016-02-29 公開日 2016-08-31 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography. Nat Commun, 7, 2016

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