Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6U66
DownloadVisualize
BU of 6u66 by Molmil
Structure of the trimeric globular domain of Adiponectin
分子名称: Adiponectin, CALCIUM ION, SODIUM ION
著者Pascolutti, R, Kruse, A.C, Erlandson, S.C, Burri, D.J, Zheng, S.
登録日2019-08-29
公開日2020-01-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Mapping and engineering the interaction between adiponectin and T-cadherin.
J.Biol.Chem., 295, 2020
4ZC9
DownloadVisualize
BU of 4zc9 by Molmil
Crystal Structure of the BRD4a/DB-2-190 complex
分子名称: 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(4-{[({2-[(3S)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}oxy)acetyl]amino}butyl)acetamide, Bromodomain-containing protein 4
著者Seo, H.-S, DeAngelo, S, Bradner, J.E.
登録日2015-04-15
公開日2015-11-18
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献DRUG DEVELOPMENT. Phthalimide conjugation as a strategy for in vivo target protein degradation.
Science, 348, 2015
3VIG
DownloadVisualize
BU of 3vig by Molmil
Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with 1-deoxynojirimycin
分子名称: 1-DEOXYNOJIRIMYCIN, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-glucosidase, ...
著者Jeng, W.Y, Liu, C.I, Wang, A.H.J.
登録日2011-10-03
公開日2012-07-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献High-resolution structures of Neotermes koshunensis beta-glucosidase mutants provide insights into the catalytic mechanism and the synthesis of glucoconjugates
Acta Crystallogr.,Sect.D, 68, 2012
2BF9
DownloadVisualize
BU of 2bf9 by Molmil
Anisotropic refinement of avian (turkey) pancreatic polypeptide at 0. 99 Angstroms resolution.
分子名称: PANCREATIC HORMONE, ZINC ION
著者Tickle, I, Glover, I, Pitts, J, Wood, S, Blundell, T.L.
登録日2004-12-06
公開日2004-12-08
最終更新日2019-05-22
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Conformational Flexibility in a Small Globular Hormone. X-Ray Analysis of Avian Pancreatic Polypeptide at 0.98 Angstroms Resolution
Biopolymers, 22, 1983
7A2W
DownloadVisualize
BU of 7a2w by Molmil
Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 3.0
分子名称: CITRIC ACID, Tyrosine-protein kinase Fyn, VSL12
著者Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
登録日2020-08-18
公開日2021-08-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 3.0
To be published
8CHN
DownloadVisualize
BU of 8chn by Molmil
The FK1 domain of FKBP51 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfonimidoyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one
分子名称: (1S,5S,6R)-10-[[3,5-bis(chloranyl)phenyl]sulfonimidoyl]-5-ethenyl-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one, Peptidyl-prolyl cis-trans isomerase FKBP5
著者Meyners, C, Purder, P.L, Hausch, F.
登録日2023-02-08
公開日2023-09-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Deconstructing Protein Binding of Sulfonamides and Sulfonamide Analogues.
Jacs Au, 3, 2023
6RK0
DownloadVisualize
BU of 6rk0 by Molmil
Structure of the Flavocytochrome Anf3 from Azotobacter vinelandii
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
著者Murray, J.W, Varghese, F, Kabasakal, B.
登録日2019-04-29
公開日2019-05-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献A low-potential terminal oxidase associated with the iron-only nitrogenase from the nitrogen-fixing bacteriumAzotobacter vinelandii.
J.Biol.Chem., 294, 2019
5O45
DownloadVisualize
BU of 5o45 by Molmil
Structure of human PD-L1 in complex with inhibitor
分子名称: PHE-MEA-9KK-SAR-ASP-VAL-MEA-TYR-SAR-TRP-TYR-LEU-CCS-GLY-NH2, Programmed cell death 1 ligand 1
著者Magiera, K, Grudnik, P, Dubin, G, Holak, T.A.
登録日2017-05-26
公開日2017-09-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Bioactive Macrocyclic Inhibitors of the PD-1/PD-L1 Immune Checkpoint.
Angew. Chem. Int. Ed. Engl., 56, 2017
6RVU
DownloadVisualize
BU of 6rvu by Molmil
Crystal structure of the Burkholderia Lethal Factor 1 (BLF1)
分子名称: 1,2-ETHANEDIOL, Lethal Factor 1 (BLF1)
著者Mobbs, G.W, Aziz, A.A, Blackburn, G.M, Sedelnikova, S.E, Minshull, T.C, Dickman, M.J, Baker, P.J, Nathan, S, Firdaus-Raih, M, Rice, D.W.
登録日2019-06-01
公開日2020-07-15
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Molecular basis of specificity and deamidation of eIF4A by Burkholderia Lethal Factor 1.
Commun Biol, 5, 2022
3AGO
DownloadVisualize
BU of 3ago by Molmil
Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate
分子名称: CALCIUM ION, CHLORIDE ION, Ribonuclease U2, ...
著者Noguchi, S.
登録日2010-04-03
公開日2010-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate
Acta Crystallogr.,Sect.D, 66, 2010
5OTN
DownloadVisualize
BU of 5otn by Molmil
Crystal structure of zebrafish MTH1 in complex with O6-methyl-dGMP
分子名称: 1,2-ETHANEDIOL, 6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, ...
著者Gustafsson, R, Henriksson, L, Jemth, A.-S, Brautigam, L, Carreras Puigvert, J, Homan, E, Warpman Berglund, U, Helleday, T, Stenmark, P.
登録日2017-08-22
公開日2018-09-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP.
Nucleic Acids Res., 46, 2018
7UOX
DownloadVisualize
BU of 7uox by Molmil
NDM1-inhibitor co-structure
分子名称: (2M)-4'-(hydroxymethyl)-2-(1H-tetrazol-5-yl)[1,1'-biphenyl]-3-ol, ACETATE ION, CADMIUM ION, ...
著者Scapin, G, Fischmann, T.O.
登録日2022-04-14
公開日2023-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates.
J.Med.Chem., 65, 2022
5OGO
DownloadVisualize
BU of 5ogo by Molmil
Crystal structure of chimeric carbonic anhydrase I with 3-(Benzylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl)sulfonyl]benzenesulfonamide
分子名称: 1,2-ETHANEDIOL, 3-(benzylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl)sulfonyl]benzenesulfonamide, BICINE, ...
著者Smirnov, A, Manakova, E, Grazulis, S.
登録日2017-07-13
公開日2018-08-01
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Crystal structure of chimeric carbonic anhydrase I with 3-(Benzylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl)sulfonyl]benzenesulfonamide
To be published
3WOU
DownloadVisualize
BU of 3wou by Molmil
Crystal Structure of The Recombinant Thaumatin II at 0.99 A
分子名称: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin-2
著者Masuda, T, Mikami, B, Tani, F.
登録日2013-12-30
公開日2014-10-22
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Atomic structure of recombinant thaumatin II reveals flexible conformations in two residues critical for sweetness and three consecutive glycine residues
Biochimie, 106, 2014
5II8
DownloadVisualize
BU of 5ii8 by Molmil
Orthorhombic crystal structure of red abalone lysin at 0.99 A resolution
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Egg-lysin, SULFATE ION
著者Sadat Al-Hosseini, H, Raj, I, Nishimura, K, De Sanctis, D, Jovine, L.
登録日2016-03-01
公開日2017-06-14
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Structural Basis of Egg Coat-Sperm Recognition at Fertilization.
Cell, 169, 2017
5MOP
DownloadVisualize
BU of 5mop by Molmil
Joint X-ray/neutron structure of cationic trypsin in its apo form
分子名称: CALCIUM ION, Cationic trypsin, SULFATE ION
著者Schiebel, J, Schrader, T.E, Ostermann, A, Heine, A, Klebe, G.
登録日2016-12-14
公開日2018-01-17
最終更新日2024-05-01
実験手法NEUTRON DIFFRACTION (0.99 Å), X-RAY DIFFRACTION
主引用文献Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
1ZF5
DownloadVisualize
BU of 1zf5 by Molmil
GCT duplex B-DNA
分子名称: 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'
著者Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S.
登録日2005-04-19
公開日2005-05-10
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献How sequence defines structure: a crystallographic map of DNA structure and conformation.
Proc.Natl.Acad.Sci.Usa, 102, 2005
8A55
DownloadVisualize
BU of 8a55 by Molmil
Structure of N-terminal SARS-CoV-2 nonstructural protein 1 (nsp1) at atomic resolution
分子名称: Host translation inhibitor nsp1
著者Ma, S, Pinotsis, N, Bowler, M.W, Kozielski, F.
登録日2022-06-14
公開日2022-11-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Two Ligand-Binding Sites on SARS-CoV-2 Non-Structural Protein 1 Revealed by Fragment-Based X-ray Screening.
Int J Mol Sci, 23, 2022
1UG6
DownloadVisualize
BU of 1ug6 by Molmil
Structure of beta-glucosidase at atomic resolution from thermus thermophilus HB8
分子名称: GLYCEROL, beta-glycosidase
著者Lokanath, N.K, Shiromizu, I, Miyano, M, Yokoyama, S, Kuramitsu, S, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-06-12
公開日2003-06-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Structure of Beta-Glucosidase at Atomic Resolution from Thermus Thermophilus Hb8
To be Published
5MNF
DownloadVisualize
BU of 5mnf by Molmil
Cationic trypsin in its apo form (deuterated sample at 295 K)
分子名称: CALCIUM ION, Cationic trypsin, SULFATE ION
著者Schiebel, J, Heine, A, Klebe, G.
登録日2016-12-13
公開日2018-01-17
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
4IAU
DownloadVisualize
BU of 4iau by Molmil
Atomic resolution structure of Geodin, a beta-gamma crystallin from Geodia cydonium
分子名称: Beta-gamma-crystallin, CALCIUM ION, GLYCEROL
著者Vergara, A, Grassi, M, Sica, F, Mazzarella, L, Merlino, A.
登録日2012-12-07
公開日2013-06-05
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献A novel interdomain interface in crystallins: structural characterization of the [beta][gamma]-crystallin from Geodia cydonium at 0.99 A resolution
Acta Crystallogr.,Sect.D, 69, 2013
8WDG
DownloadVisualize
BU of 8wdg by Molmil
Subatomic crystal structure of glucose isomerase from Streptomyces rubiginosus
分子名称: MAGNESIUM ION, Xylitol, Xylose isomerase
著者Nam, K.H.
登録日2023-09-15
公開日2023-10-04
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Xylitol binding to the M1 site of glucose isomerase induces a conformational change in the substrate binding channel.
Biochem.Biophys.Res.Commun., 682, 2023
5FLK
DownloadVisualize
BU of 5flk by Molmil
Structure of haloalkane dehalogenase variant DhaA101
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DHAA101, DI(HYDROXYETHYL)ETHER
著者Chaloupkova, R, Waterman, J, Damborsky, J.
登録日2015-10-26
公開日2017-03-29
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Evolutionary Analysis is a Powerful Complement to Energy Calculations Allowing Entropy-Driven Stabilization
To be Published
7AM9
DownloadVisualize
BU of 7am9 by Molmil
OMPD-domain of human UMPS in complex with the substrate OMP at 0.99 Angstroms resolution
分子名称: GLYCEROL, OROTIDINE-5'-MONOPHOSPHATE, SULFATE ION, ...
著者Tittmann, K, Rindfleisch, S, Krull, M.
登録日2020-10-08
公開日2021-11-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Ground-state destabilization by electrostatic repulsion is not a driving force in orotidine-5-monophosphate decarboxylase catalysis
Nat Catal, 5, 2022
5CMT
DownloadVisualize
BU of 5cmt by Molmil
Fic protein from Neisseria meningitidis (NmFic) mutant E156R Y183F in dimeric form
分子名称: Adenosine monophosphate-protein transferase NmFic, CHLORIDE ION, GLYCEROL
著者Stanger, F.V, Schirmer, T.
登録日2015-07-17
公開日2016-01-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Intrinsic regulation of FIC-domain AMP-transferases by oligomerization and automodification.
Proc.Natl.Acad.Sci.USA, 113, 2016

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon